@cleocode/core 2026.9.16 → 2026.9.17

package/dist/scaffold/ensure-config.js

@@ -3,7 +3,6 @@
  * Config-file scaffolding: .gitignore, worktree-include, config.json,
  * project-info.json, and related template/version utilities.
  */
-import { randomUUID } from 'node:crypto';
 import { existsSync, readFileSync } from 'node:fs';
 import { writeFile } from 'node:fs/promises';
 import { basename, dirname, join, resolve } from 'node:path';
@@ -11,6 +10,7 @@ import { fileURLToPath } from 'node:url';
 import { generateProjectHash } from '../nexus/hash.js';
 import { getConfigPath, resolveCleoDir } from '../paths.js';
 import { saveJson } from '../store/json.js';
+import { decideProjectIdentity, ensurePortableProjectId } from './project-identity.js';
 /**
  * Resolve the `.cleo` directory for scaffold steps.
  *
@@ -46,6 +46,9 @@ export const CLEO_GITIGNORE_FALLBACK = `# .cleo/.gitignore — Deny-by-default f
 # Recovery for all four runtime files (tasks.db, brain.db, config.json,
 # project-info.json) is provided by \`cleo backup add\` snapshots under
 # .cleo/backups/. See .cleo/adrs/ADR-013 for the full recovery story.
+#
+# ADR-094 (amends ADR-013 §9, T12325): project-id IS tracked — the write-once portable
+# project identity. CLEO never rewrites it, so git has nothing to overwrite.
 
 # Step 1: Ignore everything
 *
@@ -53,6 +56,7 @@ export const CLEO_GITIGNORE_FALLBACK = `# .cleo/.gitignore — Deny-by-default f
 # Allow list
 !.gitignore
 !project-context.json
+!project-id
 !setup-otel.sh
 !DATA-SAFETY-IMPLEMENTATION-SUMMARY.md
 !adrs/
@@ -376,59 +380,78 @@ export async function ensureConfig(projectRoot, opts) {
     };
 }
 /**
- * Create or refresh project-info.json.
+ * Create or refresh project-info.json, and adopt its id into the tracked,
+ * write-once `.cleo/project-id` (T12325).
  * Idempotent: skips if file exists (unless force).
  *
+ * The id is never minted while it can be re-linked: an existing local id is
+ * kept, a committed `.cleo/project-id` is used by a fresh clone, and otherwise
+ * the global registry is searched before a new id is minted (see
+ * {@link decideProjectIdentity}).
+ *
  * @param projectRoot - Absolute path to the project root directory
  * @param opts - Optional configuration
  * @param opts.force - When true, regenerate even if the file exists
- * @returns Scaffold result indicating the action taken
+ * @param opts.mintNewIdentity - Explicitly mint a new id instead of re-linking
+ * @returns Scaffold result indicating the action taken; `details` carries the
+ *   identity provenance and any conflict to report
  */
 export async function ensureProjectInfo(projectRoot, opts) {
     const cleoDir = resolveScaffoldCleoDir(projectRoot);
     const projectInfoPath = join(cleoDir, 'project-info.json');
-    if (existsSync(projectInfoPath) && !opts?.force) {
+    let existing;
+    if (existsSync(projectInfoPath)) {
         try {
-            const existing = JSON.parse(readFileSync(projectInfoPath, 'utf-8'));
-            let repaired = false;
-            if (typeof existing.projectId !== 'string' || existing.projectId.length === 0) {
-                existing.projectId = randomUUID();
-                existing.lastUpdated = new Date().toISOString();
-                repaired = true;
-            }
-            // Backfill missing name (cheap — always available from basename).
-            if (typeof existing.name !== 'string' || existing.name.length === 0) {
-                existing.name = basename(resolve(projectRoot));
-                existing.lastUpdated = new Date().toISOString();
-                repaired = true;
-            }
-            if (repaired) {
-                await writeFile(projectInfoPath, JSON.stringify(existing, null, 2));
-                return { action: 'repaired', path: projectInfoPath, details: 'Backfilled missing fields' };
-            }
-            return { action: 'skipped', path: projectInfoPath, details: 'Already exists' };
+            existing = JSON.parse(readFileSync(projectInfoPath, 'utf-8'));
         }
         catch {
             // If parse fails, fall through to regenerate
         }
     }
-    // Preserve immutable identity fields when force-regenerating.
-    let existingProjectId;
-    let existingCreatedAt;
-    if (opts?.force && existsSync(projectInfoPath)) {
-        try {
-            const existing = JSON.parse(readFileSync(projectInfoPath, 'utf-8'));
-            if (typeof existing.projectId === 'string' && existing.projectId.length > 0) {
-                existingProjectId = existing.projectId;
-            }
-            if (typeof existing.createdAt === 'string' && existing.createdAt.length > 0) {
-                existingCreatedAt = existing.createdAt;
-            }
+    const existingProjectId = typeof existing?.['projectId'] === 'string' && existing['projectId'].length > 0
+        ? existing['projectId']
+        : undefined;
+    const identity = await decideProjectIdentity(projectRoot, existingProjectId, {
+        mintNewIdentity: opts?.mintNewIdentity,
+    });
+    const describeIdentity = async () => {
+        const outcome = await ensurePortableProjectId(projectRoot, identity.projectId);
+        return [
+            `identity ${identity.projectId} (${identity.source}); .cleo/project-id ${outcome}`,
+            ...identity.diagnostics,
+        ].join('; ');
+    };
+    if (existing && !opts?.force) {
+        let repaired = false;
+        if (!existingProjectId) {
+            existing['projectId'] = identity.projectId;
+            existing['lastUpdated'] = new Date().toISOString();
+            repaired = true;
         }
-        catch {
-            // If parse fails, treat as fresh creation.
+        // Backfill missing name (cheap — always available from basename).
+        if (typeof existing['name'] !== 'string' || existing['name'].length === 0) {
+            existing['name'] = basename(resolve(projectRoot));
+            existing['lastUpdated'] = new Date().toISOString();
+            repaired = true;
+        }
+        if (repaired) {
+            await writeFile(projectInfoPath, JSON.stringify(existing, null, 2));
+            return {
+                action: 'repaired',
+                path: projectInfoPath,
+                details: `Backfilled missing fields; ${await describeIdentity()}`,
+            };
         }
+        return {
+            action: 'skipped',
+            path: projectInfoPath,
+            details: `Already exists; ${await describeIdentity()}`,
+        };
     }
+    // Preserve immutable identity fields when force-regenerating.
+    const existingCreatedAt = typeof existing?.['createdAt'] === 'string' && existing['createdAt'].length > 0
+        ? existing['createdAt']
+        : undefined;
     const projectHash = generateProjectHash(projectRoot);
     const cleoVersion = getCleoVersion();
     const now = new Date().toISOString();
@@ -448,7 +471,7 @@ export async function ensureProjectInfo(projectRoot, opts) {
     const projectInfo = {
         $schema: './schemas/project-info.schema.json',
         schemaVersion: '1.0.0',
-        projectId: existingProjectId ?? randomUUID(),
+        projectId: identity.projectId,
         projectHash,
         name: basename(resolve(projectRoot)),
         ...(remoteUrl && { remoteUrl }),
@@ -463,7 +486,7 @@ export async function ensureProjectInfo(projectRoot, opts) {
     };
     await writeFile(projectInfoPath, JSON.stringify(projectInfo, null, 2));
     const action = opts?.force && existsSync(projectInfoPath) ? 'regenerated' : 'created';
-    return { action, path: projectInfoPath };
+    return { action, path: projectInfoPath, details: await describeIdentity() };
 }
 /**
  * No-op. Kept for API compatibility.

package/dist/scaffold/ensure-config.js.map

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package/dist/scaffold/project-identity.d.ts

@@ -0,0 +1,136 @@
+/**
+ * Write-once portable project identity: decide, re-link, adopt (T12325).
+ *
+ * The tracked `.cleo/project-id` file (read by `@cleocode/paths`) is the one
+ * project identifier that survives a fresh clone, a move, and a new device.
+ * This module owns the two write-side rules ADR-094 (amending ADR-013 §9) depends on:
+ *
+ * 1. **Write once.** The file is created with `O_EXCL` and never rewritten. A
+ *    conflicting or malformed file is reported, not repaired.
+ * 2. **Never silently re-mint.** When no local or tracked id exists, the
+ *    global registry is searched for the project's previous identity (same
+ *    path, its canonical-fingerprint alias, or a live checkout of the same remote). A
+ *    unique candidate is re-linked; several candidates refuse to guess; a new
+ *    id is minted only when nothing can be re-linked or when the caller asks
+ *    for one explicitly.
+ *
+ * Precedence when both files exist and disagree: the local
+ * `project-info.json` id wins and the conflict is reported. Local state
+ * (registry row, aliases, brain) is keyed by that id, so switching silently
+ * would re-key it — the data-loss geometry this whole design avoids. Two ids
+ * for one repository means two lineages (typically two devices that each ran
+ * `cleo init` before this file existed); reconciling them is an explicit act.
+ *
+ * @task T12325
+ */
+/**
+ * Where the identity a scaffold step settled on came from.
+ *
+ * - `project-info` — the existing local `project-info.json` id (adopted as-is).
+ * - `tracked` — the committed `.cleo/project-id` (fresh clone).
+ * - `registry-path` / `registry-alias` / `registry-remote` — re-linked from the
+ *   global registry because neither file was present.
+ * - `minted` — a new random id; only when nothing could be re-linked or the
+ *   caller explicitly asked for a new identity.
+ */
+export type ProjectIdentitySource = 'project-info' | 'tracked' | 'registry-path' | 'registry-alias' | 'registry-remote' | 'minted';
+/** How a registry row was matched as a re-link candidate. */
+export type RelinkVia = 'registry-path' | 'registry-alias' | 'registry-remote';
+/** One previous identity the global registry offers for a project root. */
+export interface RelinkCandidate {
+    /** The registered immutable project id. */
+    projectId: string;
+    /** The registry's recorded path for that id (may no longer exist). */
+    projectPath: string;
+    /** Which evidence matched it. */
+    via: RelinkVia;
+}
+/** The identity a scaffold step should use, and why. */
+export interface ProjectIdentityDecision {
+    /** The id to write into `project-info.json`. */
+    projectId: string;
+    /** Provenance of {@link ProjectIdentityDecision.projectId}. */
+    source: ProjectIdentitySource;
+    /** Human-readable facts to surface (conflicts, re-links, coverage gaps). */
+    diagnostics: string[];
+}
+/** Outcome of making sure `.cleo/project-id` records the project's id. */
+export type PortableIdFileOutcome = 
+/** Already present with the same id. */
+'present'
+/** Created now (first adoption). */
+ | 'written'
+/** Present with a DIFFERENT id — reported, not rewritten. */
+ | 'conflict'
+/** Present but unreadable/malformed — reported, not rewritten. */
+ | 'invalid'
+/** No `<projectRoot>/.cleo/` directory to write into. */
+ | 'no-cleo-dir';
+/** Options for {@link decideProjectIdentity}. */
+export interface DecideProjectIdentityOptions {
+    /**
+     * Explicitly request a new identity instead of re-linking. The only way to
+     * mint while the registry offers candidates.
+     */
+    mintNewIdentity?: boolean;
+    /** Global CLEO home whose registry is searched (defaults to the current one). */
+    cleoHome?: string;
+}
+/**
+ * Normalise a git remote URL so `git@host:o/r.git` and `https://host/o/r`
+ * compare equal. Returns `null` for empty input.
+ *
+ * @param url - Raw `git remote get-url` output or a stored `remoteUrl`.
+ * @returns A `host/owner/repo` style key, or `null`.
+ */
+export declare function normalizeRemoteUrl(url: string | null | undefined): string | null;
+/**
+ * Search the global registry for identities this project root previously had.
+ *
+ * Tiers, strongest first: a row registered at this exact path; an alias row
+ * for this path's derived ids; a row whose LIVE checkout declares the same
+ * git remote. Stranded rows (path gone) cannot be matched by remote because
+ * the registry stores no remote — their checkout is the only record of it.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param cleoHome - Global CLEO home whose registry to read.
+ * @returns Candidates plus diagnostics; an unreadable registry yields no
+ *   candidates and a diagnostic saying coverage is missing.
+ */
+export declare function findRelinkCandidates(projectRoot: string, cleoHome?: string): Promise<{
+    candidates: RelinkCandidate[];
+    diagnostics: string[];
+}>;
+/**
+ * Decide the identity a scaffold step writes into `project-info.json`.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param localInfoId - The id already in `project-info.json`, if any.
+ * @param options - Explicit-mint request and registry home.
+ * @returns The decision with provenance and diagnostics.
+ * @throws {CleoError} `CONFIG_ERROR` when the tracked file is malformed, or
+ *   when the registry offers several candidates and no explicit mint was asked.
+ *
+ * @example
+ * ```ts
+ * const { projectId, source } = await decideProjectIdentity(root, undefined);
+ * ```
+ */
+export declare function decideProjectIdentity(projectRoot: string, localInfoId: string | undefined, options?: DecideProjectIdentityOptions): Promise<ProjectIdentityDecision>;
+/**
+ * Make sure `<projectRoot>/.cleo/project-id` records `projectId` — write-once.
+ *
+ * Creates the file only when absent (`O_EXCL`); a present file is compared,
+ * never rewritten.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param projectId - The identity to adopt.
+ * @returns What happened; `conflict`/`invalid` are for the caller to report.
+ *
+ * @example
+ * ```ts
+ * const outcome = await ensurePortableProjectId(root, info.projectId);
+ * ```
+ */
+export declare function ensurePortableProjectId(projectRoot: string, projectId: string): Promise<PortableIdFileOutcome>;
+//# sourceMappingURL=project-identity.d.ts.map

package/dist/scaffold/project-identity.d.ts.map

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package/dist/scaffold/project-identity.js

@@ -0,0 +1,225 @@
+/**
+ * Write-once portable project identity: decide, re-link, adopt (T12325).
+ *
+ * The tracked `.cleo/project-id` file (read by `@cleocode/paths`) is the one
+ * project identifier that survives a fresh clone, a move, and a new device.
+ * This module owns the two write-side rules ADR-094 (amending ADR-013 §9) depends on:
+ *
+ * 1. **Write once.** The file is created with `O_EXCL` and never rewritten. A
+ *    conflicting or malformed file is reported, not repaired.
+ * 2. **Never silently re-mint.** When no local or tracked id exists, the
+ *    global registry is searched for the project's previous identity (same
+ *    path, its canonical-fingerprint alias, or a live checkout of the same remote). A
+ *    unique candidate is re-linked; several candidates refuse to guess; a new
+ *    id is minted only when nothing can be re-linked or when the caller asks
+ *    for one explicitly.
+ *
+ * Precedence when both files exist and disagree: the local
+ * `project-info.json` id wins and the conflict is reported. Local state
+ * (registry row, aliases, brain) is keyed by that id, so switching silently
+ * would re-key it — the data-loss geometry this whole design avoids. Two ids
+ * for one repository means two lineages (typically two devices that each ran
+ * `cleo init` before this file existed); reconciling them is an explicit act.
+ *
+ * @task T12325
+ */
+import { randomUUID } from 'node:crypto';
+import { existsSync, readFileSync } from 'node:fs';
+import { writeFile } from 'node:fs/promises';
+import { join, resolve } from 'node:path';
+import { ExitCode } from '@cleocode/contracts';
+import { canonicalizePath, computeCanonicalProjectId, formatPortableProjectId, getCleoHome, isValidPortableProjectId, portableProjectIdPath, readPortableProjectId, } from '@cleocode/paths';
+import { CleoError } from '../errors.js';
+/**
+ * Normalise a git remote URL so `git@host:o/r.git` and `https://host/o/r`
+ * compare equal. Returns `null` for empty input.
+ *
+ * @param url - Raw `git remote get-url` output or a stored `remoteUrl`.
+ * @returns A `host/owner/repo` style key, or `null`.
+ */
+export function normalizeRemoteUrl(url) {
+    if (!url)
+        return null;
+    let key = url.trim();
+    if (!key)
+        return null;
+    key = key.replace(/^[a-z][a-z0-9+.-]*:\/\//i, '');
+    key = key.replace(/^[^@/]+@/, '');
+    key = key.replace(/^([^/:]+):(?!\d+\/)/, '$1/');
+    key = key.replace(/\/+$/, '').replace(/\.git$/i, '');
+    return key.toLowerCase() || null;
+}
+/** Read `remoteUrl` from a checkout's `project-info.json`; null when absent or unusable. */
+function readInfoRemote(projectPath) {
+    try {
+        const data = JSON.parse(readFileSync(join(projectPath, '.cleo', 'project-info.json'), 'utf-8'));
+        return typeof data['remoteUrl'] === 'string' ? data['remoteUrl'] : null;
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * Search the global registry for identities this project root previously had.
+ *
+ * Tiers, strongest first: a row registered at this exact path; an alias row
+ * for this path's derived ids; a row whose LIVE checkout declares the same
+ * git remote. Stranded rows (path gone) cannot be matched by remote because
+ * the registry stores no remote — their checkout is the only record of it.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param cleoHome - Global CLEO home whose registry to read.
+ * @returns Candidates plus diagnostics; an unreadable registry yields no
+ *   candidates and a diagnostic saying coverage is missing.
+ */
+export async function findRelinkCandidates(projectRoot, cleoHome = getCleoHome()) {
+    const diagnostics = [];
+    const candidates = [];
+    const lexicalRoot = resolve(projectRoot);
+    const realRoot = canonicalizePath(projectRoot);
+    const rootForms = new Set([lexicalRoot, realRoot]);
+    try {
+        const { getNexusRegistryDb } = await import('../store/nexus-sqlite.js');
+        const { projectIdAliases, projectRegistry } = await import('../store/schema/nexus-schema.js');
+        const { inArray } = await import('drizzle-orm');
+        const db = await getNexusRegistryDb(cleoHome);
+        const rows = db
+            .select({ projectId: projectRegistry.projectId, projectPath: projectRegistry.projectPath })
+            .from(projectRegistry)
+            .all();
+        for (const row of rows) {
+            if (rootForms.has(row.projectPath))
+                candidates.push({ ...row, via: 'registry-path' });
+        }
+        // Only the full canonical fingerprint is a re-link key. The legacy
+        // base64url alias is truncated to 32 chars (24 path bytes), so every
+        // checkout under a shared prefix collides on it — measured: two sibling
+        // temp dirs re-linked to each other through it.
+        const derived = [computeCanonicalProjectId(realRoot)];
+        const aliasRows = db
+            .select()
+            .from(projectIdAliases)
+            .where(inArray(projectIdAliases.legacyId, derived))
+            .all();
+        for (const alias of aliasRows) {
+            const owner = rows.find((row) => row.projectId === alias.canonicalId);
+            candidates.push({
+                projectId: alias.canonicalId,
+                projectPath: owner?.projectPath ?? '',
+                via: 'registry-alias',
+            });
+        }
+        const { findGitRemoteUrl } = await import('../nexus/identity.js');
+        const remote = normalizeRemoteUrl(await findGitRemoteUrl(realRoot));
+        if (remote) {
+            for (const row of rows) {
+                if (rootForms.has(row.projectPath) || !existsSync(row.projectPath))
+                    continue;
+                if (normalizeRemoteUrl(readInfoRemote(row.projectPath)) === remote)
+                    candidates.push({ ...row, via: 'registry-remote' });
+            }
+        }
+    }
+    catch (error) {
+        diagnostics.push(`registry unavailable, re-link coverage missing: ${error instanceof Error ? error.message : String(error)}`);
+    }
+    return { candidates, diagnostics };
+}
+/**
+ * Decide the identity a scaffold step writes into `project-info.json`.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param localInfoId - The id already in `project-info.json`, if any.
+ * @param options - Explicit-mint request and registry home.
+ * @returns The decision with provenance and diagnostics.
+ * @throws {CleoError} `CONFIG_ERROR` when the tracked file is malformed, or
+ *   when the registry offers several candidates and no explicit mint was asked.
+ *
+ * @example
+ * ```ts
+ * const { projectId, source } = await decideProjectIdentity(root, undefined);
+ * ```
+ */
+export async function decideProjectIdentity(projectRoot, localInfoId, options = {}) {
+    const tracked = readPortableProjectId(projectRoot);
+    const diagnostics = [];
+    if (localInfoId) {
+        if (tracked.status === 'valid' && tracked.projectId !== localInfoId) {
+            diagnostics.push(`identity conflict: .cleo/project-id is '${tracked.projectId}' but project-info.json is '${localInfoId}'; keeping the local id — reconcile explicitly`);
+        }
+        return { projectId: localInfoId, source: 'project-info', diagnostics };
+    }
+    if (tracked.status === 'valid') {
+        return { projectId: tracked.projectId, source: 'tracked', diagnostics };
+    }
+    if (tracked.status === 'invalid') {
+        throw new CleoError(ExitCode.CONFIG_ERROR, `Tracked project identity ${portableProjectIdPath(projectRoot)} is unusable (${tracked.reason}); refusing to mint a replacement`, { fix: 'Restore it from version control: `git checkout -- .cleo/project-id`' });
+    }
+    if (options.mintNewIdentity) {
+        diagnostics.push('minted a new identity on explicit request');
+        return { projectId: randomUUID(), source: 'minted', diagnostics };
+    }
+    const found = await findRelinkCandidates(projectRoot, options.cleoHome);
+    diagnostics.push(...found.diagnostics);
+    for (const via of ['registry-path', 'registry-alias', 'registry-remote']) {
+        const tier = found.candidates.filter((candidate) => candidate.via === via);
+        const ids = [...new Set(tier.map((candidate) => candidate.projectId))].filter(isValidPortableProjectId);
+        if (ids.length === 1) {
+            const [projectId] = ids;
+            diagnostics.push(`re-linked identity '${projectId}' from ${via} (${tier[0]?.projectPath || 'alias'})`);
+            return { projectId, source: via, diagnostics };
+        }
+        if (ids.length > 1) {
+            throw new CleoError(ExitCode.CONFIG_ERROR, `Cannot re-link project identity for ${projectRoot}: ${ids.length} registered identities match by ${via} (${tier
+                .map((candidate) => `${candidate.projectId} @ ${candidate.projectPath}`)
+                .join(', ')})`, {
+                fix: 'Write the intended id to .cleo/project-id, or mint explicitly with `cleo init --new-identity`',
+            });
+        }
+    }
+    diagnostics.push('minted a new identity: no local, tracked or registered identity to re-link');
+    return { projectId: randomUUID(), source: 'minted', diagnostics };
+}
+/**
+ * Make sure `<projectRoot>/.cleo/project-id` records `projectId` — write-once.
+ *
+ * Creates the file only when absent (`O_EXCL`); a present file is compared,
+ * never rewritten.
+ *
+ * @param projectRoot - Absolute project root.
+ * @param projectId - The identity to adopt.
+ * @returns What happened; `conflict`/`invalid` are for the caller to report.
+ *
+ * @example
+ * ```ts
+ * const outcome = await ensurePortableProjectId(root, info.projectId);
+ * ```
+ */
+export async function ensurePortableProjectId(projectRoot, projectId) {
+    const current = readPortableProjectId(projectRoot);
+    if (current.status === 'valid')
+        return current.projectId === projectId ? 'present' : 'conflict';
+    if (current.status === 'invalid')
+        return 'invalid';
+    if (!isValidPortableProjectId(projectId))
+        return 'invalid';
+    if (!existsSync(join(projectRoot, '.cleo')))
+        return 'no-cleo-dir';
+    try {
+        await writeFile(portableProjectIdPath(projectRoot), formatPortableProjectId(projectId), {
+            flag: 'wx',
+        });
+        return 'written';
+    }
+    catch (error) {
+        if (error instanceof Error && 'code' in error && error.code === 'EEXIST') {
+            // Lost a race with another writer: judge what they wrote, never overwrite it.
+            const raced = readPortableProjectId(projectRoot);
+            if (raced.status === 'valid')
+                return raced.projectId === projectId ? 'present' : 'conflict';
+            return 'invalid';
+        }
+        throw error;
+    }
+}
+//# sourceMappingURL=project-identity.js.map

package/dist/scaffold/project-identity.js.map

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