@cleocode/core 2026.8.3 → 2026.8.5

package/dist/changesets/writer.js

@@ -142,7 +142,7 @@ export async function writeChangesetEntry(entry, opts) {
     //
     // The reservation is consumed by `attachmentStore.put` on success (writer
     // contract). On any subsequent failure path we explicitly release with
-    // `releaseReservedSlug(validated.id)` so retries do not see a stale claim.
+    // `releaseReservedSlug(validated.id, opts.projectRoot)` so retries do not see a stale claim.
     //
     // This ELIMINATES the rollback path that previously deleted
     // `.changeset/<slug>.md` after a late-bound `SlugCollisionError`. The
@@ -184,7 +184,7 @@ export async function writeChangesetEntry(entry, opts) {
             /* Already gone or unwritable — ignore. */
         }
         // Release the slug reservation so retries do not see a stale claim.
-        releaseReservedSlug(validated.id);
+        releaseReservedSlug(validated.id, opts.projectRoot);
         return {
             ok: false,
             error: {
@@ -201,7 +201,7 @@ export async function writeChangesetEntry(entry, opts) {
     if (ownerId === undefined) {
         // Schema guarantees `tasks.length >= 1` so this is unreachable; included
         // for type narrowing.
-        releaseReservedSlug(validated.id);
+        releaseReservedSlug(validated.id, opts.projectRoot);
         try {
             rmSync(filePath, { force: true });
         }
@@ -251,7 +251,7 @@ export async function writeChangesetEntry(entry, opts) {
         // Safe regardless of whether the chokepoint reserved it or
         // attachmentStore.put already consumed it (releaseReservedSlug is a
         // no-op on an unreserved slug).
-        releaseReservedSlug(validated.id);
+        releaseReservedSlug(validated.id, opts.projectRoot);
         // T10388 — defence-in-depth: if the SSoT write throws SlugCollisionError
         // it means another process took the slug between our reserveSlug() and
         // attachmentStore.put() (cross-process race). Surface the SAME

package/dist/changesets/writer.js.map

@@ -1 +1 @@
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package/dist/docs/slug-allocator.d.ts

@@ -158,14 +158,14 @@ export interface ReserveSlugOptions {
  *
  * @internal
  */
-export declare function isSlugReserved(slug: string): boolean;
+export declare function isSlugReserved(slug: string, cwd?: string): boolean;
 /**
  * Mark a slug as consumed — typically called by `attachmentStore.put` after
  * a successful write so the reserved set does not grow unbounded.
  *
  * @internal
  */
-export declare function consumeReservedSlug(slug: string): void;
+export declare function consumeReservedSlug(slug: string, cwd?: string): void;
 /**
  * Test-only escape hatch — clears the in-process reserved set + lock map.
  *
@@ -221,7 +221,7 @@ export declare function reserveSlug(kind: BuiltinDocKind | string, slug: string,
  *
  * @param slug - The slug as passed to `reserveSlug` (will be re-normalised).
  */
-export declare function releaseReservedSlug(slug: string): void;
+export declare function releaseReservedSlug(slug: string, cwd?: string): void;
 /**
  * Params for {@link reserveSlugForDispatch} — ADR-057 uniform signature.
  *

package/dist/docs/slug-allocator.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"slug-allocator.d.ts","sourceRoot":"","sources":["../../src/docs/slug-allocator.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAqHG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAQ1D;;;;GAIG;AACH,MAAM,WAAW,aAAa;IAC5B,QAAQ,CAAC,EAAE,EAAE,IAAI,CAAC;IAClB,wDAAwD;IACxD,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAC;CACjC;AAED;;;;;GAKG;AACH,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,EAAE,EAAE,KAAK,CAAC;IACnB,QAAQ,CAAC,IAAI,EAAE,iBAAiB,CAAC;IACjC,wCAAwC;IACxC,QAAQ,CAAC,WAAW,EAAE,SAAS,MAAM,EAAE,CAAC;CACzC;AAED,2DAA2D;AAC3D,MAAM,MAAM,iBAAiB,GAAG,aAAa,GAAG,cAAc,CAAC;AAE/D;;;;;GAKG;AACH,MAAM,WAAW,kBAAkB;IACjC,0DAA0D;IAC1D,QAAQ,CAAC,GAAG,CAAC,EAAE,MAAM,CAAC;CACvB;AAiGD;;;;;;GAMG;AACH,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAElE;AAED;;;;;GAKG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,IAAI,CAEpE;AAED;;;;;;;GAOG;AACH,wBAAgB,qCAAqC,IAAI,IAAI,CAG5D;AAID;;;;;;;;;;;;;;;;;;;GAmBG;AACH,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAIpD;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,WAAW,CAC/B,IAAI,EAAE,cAAc,GAAG,MAAM,EAC7B,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,kBAAkB,GACxB,OAAO,CAAC,iBAAiB,CAAC,CAsC5B;AAED;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,IAAI,CAEpE;AAID;;;;GAIG;AACH,MAAM,WAAW,4BAA4B;IAC3C,4EAA4E;IAC5E,QAAQ,CAAC,IAAI,EAAE,cAAc,GAAG,MAAM,CAAC;IACvC,kDAAkD;IAClD,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;CACvB;AAED;;;;;;GAMG;AACH,MAAM,MAAM,4BAA4B,GAAG,iBAAiB,CAAC;AAE7D;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,sBAAsB,CAC1C,WAAW,EAAE,MAAM,EACnB,MAAM,EAAE,4BAA4B,GACnC,OAAO,CAAC,4BAA4B,CAAC,CAEvC"}

package/dist/docs/slug-allocator.js

@@ -116,6 +116,7 @@
  * @saga T10288
  * @adr ADR-076 §6 (slug namespace policy), ADR-083 (Cleo persona)
  */
+import { getProjectRoot } from '../paths.js';
 import { deriveSlugSuggestionsForAllocator } from '../store/attachment-store.js';
 import { getDb } from '../store/sqlite.js';
 import { normalizeSlug } from './slug-normalize.js';
@@ -173,6 +174,43 @@ async function acquireSlugLock(normalizedSlug) {
  * @internal
  */
 const reservedSlugs = new Set();
+/**
+ * Compose the reservation key for a slug within a project.
+ *
+ * T12090: the set used to be keyed by slug ALONE, which made it
+ * process-global. That is fine in production — one process serves one project —
+ * but it silently defeats test isolation: vitest reuses a worker across files,
+ * so a file that reserved `t123-foo` and never consumed it left that slug
+ * reserved for every later file in the same worker, no matter how carefully
+ * each set its own `CLEO_DIR`. The module even shipped a
+ * `_resetSlugAllocatorState_TESTING_ONLY` hook to paper over it, which only
+ * helps files that remember to call it.
+ *
+ * It surfaced as a macOS-ONLY failure because shard composition differs per
+ * platform: on `macos-latest` shard 1, `docs-memory-observation.test.ts` landed
+ * in a worker that had already run a file leaving a reservation behind, and it
+ * failed with `E_SLUG_RESERVED` against a slug it had never used. Nothing was
+ * wrong with the test or with macOS — the state was simply not partitioned.
+ *
+ * Keying by resolved project root makes `CLEO_DIR` isolation real, so the
+ * reset hook becomes a convenience rather than a correctness requirement.
+ *
+ * @param slug - already-normalised slug.
+ * @param cwd - caller cwd; resolved to a project root for the key.
+ * @task T12090
+ */
+function reservationKey(slug, cwd) {
+    let root;
+    try {
+        root = getProjectRoot(cwd);
+    }
+    catch {
+        // An unresolvable root must not make two projects collide, and must not
+        // throw out of a bookkeeping helper. Fall back to the literal cwd.
+        root = cwd ?? '<unresolved>';
+    }
+    return `${root}\u0000${slug}`;
+}
 /**
  * Check whether the allocator has reserved `slug` in this process.
  *
@@ -180,8 +218,8 @@ const reservedSlugs = new Set();
  *
  * @internal
  */
-export function isSlugReserved(slug) {
-    return reservedSlugs.has(normalizeSlug(slug));
+export function isSlugReserved(slug, cwd) {
+    return reservedSlugs.has(reservationKey(normalizeSlug(slug), cwd));
 }
 /**
  * Mark a slug as consumed — typically called by `attachmentStore.put` after
@@ -189,8 +227,8 @@ export function isSlugReserved(slug) {
  *
  * @internal
  */
-export function consumeReservedSlug(slug) {
-    reservedSlugs.delete(normalizeSlug(slug));
+export function consumeReservedSlug(slug, cwd) {
+    reservedSlugs.delete(reservationKey(normalizeSlug(slug), cwd));
 }
 /**
  * Test-only escape hatch — clears the in-process reserved set + lock map.
@@ -252,7 +290,7 @@ export async function reserveSlug(kind, slug, opts) {
     try {
         // Same-process check first — another in-flight reservation already
         // claimed this slug.
-        if (reservedSlugs.has(normalizedSlug)) {
+        if (reservedSlugs.has(reservationKey(normalizedSlug, opts?.cwd))) {
             const db = await getDb(opts?.cwd);
             const suggestions = await deriveSlugSuggestionsForAllocator(db, normalizedSlug);
             return { ok: false, code: 'E_SLUG_RESERVED', suggestions };
@@ -271,7 +309,7 @@ export async function reserveSlug(kind, slug, opts) {
             return { ok: false, code: 'E_SLUG_RESERVED', suggestions };
         }
         // Free — reserve it for the imminent `put`.
-        reservedSlugs.add(normalizedSlug);
+        reservedSlugs.add(reservationKey(normalizedSlug, opts?.cwd));
         return { ok: true, normalizedSlug };
     }
     finally {
@@ -286,8 +324,8 @@ export async function reserveSlug(kind, slug, opts) {
  *
  * @param slug - The slug as passed to `reserveSlug` (will be re-normalised).
  */
-export function releaseReservedSlug(slug) {
-    reservedSlugs.delete(normalizeSlug(slug));
+export function releaseReservedSlug(slug, cwd) {
+    reservedSlugs.delete(reservationKey(normalizeSlug(slug), cwd));
 }
 /**
  * Dispatch entry-point wrapper around {@link reserveSlug} conforming to the

package/dist/docs/slug-allocator.js.map

@@ -1 +1 @@
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+{"version":3,"file":"slug-allocator.js","sourceRoot":"","sources":["../../src/docs/slug-allocator.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAqHG;AAGH,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,iCAAiC,EAAE,MAAM,8BAA8B,CAAC;AACjF,OAAO,EAAE,KAAK,EAAE,MAAM,oBAAoB,CAAC;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AA0CpD,iFAAiF;AAEjF;;;;;;;;;GASG;AACH,MAAM,aAAa,GAAG,IAAI,GAAG,EAAyB,CAAC;AAEvD;;;;;;;GAOG;AACH,KAAK,UAAU,eAAe,CAAC,cAAsB;IACnD,MAAM,IAAI,GAAG,aAAa,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC;IACpE,IAAI,OAAoB,CAAC;IACzB,MAAM,IAAI,GAAG,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,EAAE;QACzC,OAAO,GAAG,OAAO,CAAC;IACpB,CAAC,CAAC,CAAC;IACH,aAAa,CAAC,GAAG,CAAC,cAAc,EAAE,IAAI,CAAC,CAAC;IACxC,MAAM,IAAI,CAAC;IACX,IAAI,QAAQ,GAAG,KAAK,CAAC;IACrB,OAAO,GAAG,EAAE;QACV,IAAI,QAAQ;YAAE,OAAO;QACrB,QAAQ,GAAG,IAAI,CAAC;QAChB,OAAO,EAAE,CAAC;QACV,iEAAiE;QACjE,IAAI,aAAa,CAAC,GAAG,CAAC,cAAc,CAAC,KAAK,IAAI,EAAE,CAAC;YAC/C,aAAa,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC;QACvC,CAAC;IACH,CAAC,CAAC;AACJ,CAAC;AAED,iFAAiF;AAEjF;;;;;;;;;;;GAWG;AACH,MAAM,aAAa,GAAG,IAAI,GAAG,EAAU,CAAC;AAExC;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,SAAS,cAAc,CAAC,IAAY,EAAE,GAAY;IAChD,IAAI,IAAY,CAAC;IACjB,IAAI,CAAC;QACH,IAAI,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC;IAC7B,CAAC;IAAC,MAAM,CAAC;QACP,wEAAwE;QACxE,mEAAmE;QACnE,IAAI,GAAG,GAAG,IAAI,cAAc,CAAC;IAC/B,CAAC;IACD,OAAO,GAAG,IAAI,SAAS,IAAI,EAAE,CAAC;AAChC,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,cAAc,CAAC,IAAY,EAAE,GAAY;IACvD,OAAO,aAAa,CAAC,GAAG,CAAC,cAAc,CAAC,aAAa,CAAC,IAAI,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;AACrE,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,mBAAmB,CAAC,IAAY,EAAE,GAAY;IAC5D,aAAa,CAAC,MAAM,CAAC,cAAc,CAAC,aAAa,CAAC,IAAI,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;AACjE,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,qCAAqC;IACnD,aAAa,CAAC,KAAK,EAAE,CAAC;IACtB,aAAa,CAAC,KAAK,EAAE,CAAC;AACxB,CAAC;AAED,iFAAiF;AAEjF;;;;;;;;;;;;;;;;;;;GAmBG;AACH,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAEpD,iFAAiF;AAEjF;;;;;;;;;;;;;;;GAeG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,IAA6B,EAC7B,IAAY,EACZ,IAAyB;IAEzB,KAAK,IAAI,CAAC,CAAC,+DAA+D;IAC1E,wEAAwE;IACxE,MAAM,cAAc,GAAG,aAAa,CAAC,IAAI,CAAC,CAAC;IAE3C,qEAAqE;IACrE,MAAM,WAAW,GAAG,MAAM,eAAe,CAAC,cAAc,CAAC,CAAC;IAE1D,IAAI,CAAC;QACH,mEAAmE;QACnE,qBAAqB;QACrB,IAAI,aAAa,CAAC,GAAG,CAAC,cAAc,CAAC,cAAc,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC,EAAE,CAAC;YACjE,MAAM,EAAE,GAAG,MAAM,KAAK,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;YAClC,MAAM,WAAW,GAAG,MAAM,iCAAiC,CAAC,EAAE,EAAE,cAAc,CAAC,CAAC;YAChF,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,iBAAiB,EAAE,WAAW,EAAE,CAAC;QAC7D,CAAC;QAED,sDAAsD;QACtD,MAAM,EAAE,GAAG,MAAM,KAAK,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;QAClC,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,MAAM,CAAC,0BAA0B,CAAC,CAAC;QACjE,MAAM,EAAE,EAAE,EAAE,GAAG,MAAM,MAAM,CAAC,aAAa,CAAC,CAAC;QAC3C,MAAM,QAAQ,GAAG,MAAM,EAAE;aACtB,MAAM,EAAE;aACR,IAAI,CAAC,WAAW,CAAC;aACjB,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,IAAI,EAAE,cAAc,CAAC,CAAC;aAC3C,GAAG,EAAE,CAAC;QAET,IAAI,QAAQ,EAAE,CAAC;YACb,MAAM,WAAW,GAAG,MAAM,iCAAiC,CAAC,EAAE,EAAE,cAAc,CAAC,CAAC;YAChF,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,iBAAiB,EAAE,WAAW,EAAE,CAAC;QAC7D,CAAC;QAED,4CAA4C;QAC5C,aAAa,CAAC,GAAG,CAAC,cAAc,CAAC,cAAc,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;QAC7D,OAAO,EAAE,EAAE,EAAE,IAAI,EAAE,cAAc,EAAE,CAAC;IACtC,CAAC;YAAS,CAAC;QACT,WAAW,EAAE,CAAC;IAChB,CAAC;AACH,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,mBAAmB,CAAC,IAAY,EAAE,GAAY;IAC5D,aAAa,CAAC,MAAM,CAAC,cAAc,CAAC,aAAa,CAAC,IAAI,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;AACjE,CAAC;AAyBD;;;;;;;;;;;;;;;;;GAiBG;AACH,MAAM,CAAC,KAAK,UAAU,sBAAsB,CAC1C,WAAmB,EACnB,MAAoC;IAEpC,OAAO,WAAW,CAAC,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,CAAC,CAAC;AACrE,CAAC"}

package/dist/doctor/index.d.ts

@@ -25,6 +25,8 @@ export { classifyLegacyBackup, DEFAULT_HARD_RETENTION_DAYS, DEFAULT_SOFT_RETENTI
 export type { PragmaSsot, PragmaSsotEntry } from './pragma-ssot.js';
 export { loadPragmaSsot, normalisePragmaValue, PRAGMA_VALUE_NORMALISERS, } from './pragma-ssot.js';
 export { auditSagaHierarchy } from './saga-audit.js';
+export type { SupersededStoreEntry, SupersededStoreScanResult } from './superseded-store.js';
+export { LIVE_STORE_FILENAME, scanSupersededStores } from './superseded-store.js';
 export type { PruneOptions, ScanOptions } from './worktree-orphans.js';
 export { auditWorktreeOrphansComprehensive, pruneWorktreeOrphans, scanWorktreeOrphans, } from './worktree-orphans.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/doctor/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/doctor/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAKH,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,yBAAyB,EACzB,2BAA2B,EAC3B,8BAA8B,EAC9B,aAAa,EACb,wBAAwB,EACxB,yBAAyB,EACzB,iBAAiB,EACjB,sBAAsB,EACtB,wBAAwB,EACxB,qBAAqB,EACrB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,sBAAsB,EAAE,MAAM,sBAAsB,CAAC;AAG9D,OAAO,EAAE,yBAAyB,EAAE,MAAM,6BAA6B,CAAC;AAExE,YAAY,EAAE,wBAAwB,EAAE,uBAAuB,EAAE,MAAM,qBAAqB,CAAC;AAC7F,OAAO,EACL,oBAAoB,EACpB,2BAA2B,EAC3B,2BAA2B,EAC3B,sBAAsB,EACtB,uBAAuB,EACvB,kBAAkB,EAClB,kBAAkB,EAClB,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAC7B,YAAY,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACpE,OAAO,EACL,cAAc,EACd,oBAAoB,EACpB,wBAAwB,GACzB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AAErD,YAAY,EAAE,oBAAoB,EAAE,yBAAyB,EAAE,MAAM,uBAAuB,CAAC;AAC7F,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAClF,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AACvE,OAAO,EACL,iCAAiC,EACjC,oBAAoB,EACpB,mBAAmB,GACpB,MAAM,uBAAuB,CAAC"}

package/dist/doctor/index.js

@@ -28,5 +28,6 @@ export { renderInvariantAuditLines } from './invariant-audit-render.js';
 export { classifyLegacyBackup, DEFAULT_HARD_RETENTION_DAYS, DEFAULT_SOFT_RETENTION_DAYS, isLegacyBackupFilename, legacyBackupSearchRoots, pruneLegacyBackups, recommendForBackup, scanLegacyBackups, } from './legacy-backups.js';
 export { loadPragmaSsot, normalisePragmaValue, PRAGMA_VALUE_NORMALISERS, } from './pragma-ssot.js';
 export { auditSagaHierarchy } from './saga-audit.js';
+export { LIVE_STORE_FILENAME, scanSupersededStores } from './superseded-store.js';
 export { auditWorktreeOrphansComprehensive, pruneWorktreeOrphans, scanWorktreeOrphans, } from './worktree-orphans.js';
 //# sourceMappingURL=index.js.map

package/dist/doctor/index.js.map

@@ -1 +1 @@
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package/dist/doctor/superseded-store.d.ts

@@ -0,0 +1,101 @@
+/**
+ * Detect pre-dual-scope store files left on disk under their old LIVE names.
+ *
+ * ## The failure this exists to stop (T12095)
+ *
+ * Before the E6 dual-scope migration (ADR-068), a project's task database was
+ * `.cleo/tasks.db`. Afterwards it is `.cleo/cleo.db`, and task rows live in
+ * PREFIXED tables (`tasks_tasks`, `tasks_sessions`, …) rather than bare `tasks`.
+ * The migration does not delete the old file, so a migrated project has
+ *
+ *     .cleo/cleo.db     60 MB   modified today      ← the real store
+ *     .cleo/tasks.db   408 KB   modified in June    ← superseded, still named
+ *                                                     as though it were live
+ *
+ * Three separate things then point an agent at the wrong file:
+ *
+ * 1. The old name is the one every doc, ADR-013 §9 note and `cleo restore
+ *    backup --file tasks.db` invocation still says out loud.
+ * 2. Snapshots are written as `.cleo/backups/sqlite/tasks-<ts>.db` even though
+ *    they are snapshots of `cleo.db`. So the superseded 408 KB file sits beside
+ *    58 MB files bearing its own name — which reads unmistakably as truncation.
+ * 3. `cleo.db` ALSO contains a bare, empty `tasks` table next to the populated
+ *    `tasks_tasks`. Any direct SQL probe finds the empty decoy.
+ *
+ * Measured on 2026-08-09: an agent in a healthy project with 1,123 tasks looped
+ * on "the current tasks.db is 417KB which is much smaller than the backups
+ * (58MB) — maybe it was rotated/rebuilt", then began theorising that the real
+ * store might be `llmtxt.db`. Nothing was wrong with the data. The layout
+ * manufactured a corruption signal, and the agent believed it over the CLI.
+ *
+ * This check names the file, proves which store is authoritative by counting
+ * rows in both, and says what to do — so the question is answered in one call
+ * instead of becoming an investigation.
+ *
+ * @task T12095
+ * @see ADR-068 — dual-scope DB chokepoint
+ */
+/**
+ * A store file that has been superseded by `cleo.db` but still exists under the
+ * name that used to mean "the live database".
+ */
+export interface SupersededStoreEntry {
+    /** Absolute path of the superseded file. */
+    readonly path: string;
+    /** Bare filename, e.g. `tasks.db`. */
+    readonly name: string;
+    /** Size in bytes. */
+    readonly sizeBytes: number;
+    /** Last modification time, ISO 8601. */
+    readonly modifiedAt: string;
+    /**
+     * Rows found in the superseded file's own task table, if it has one.
+     * `null` when the file has no such table or could not be read.
+     */
+    readonly rowsInSuperseded: number | null;
+    /** Rows found in the LIVE store's prefixed table. */
+    readonly rowsInLive: number | null;
+    /**
+     * True when the live store demonstrably holds the data and this file does
+     * not — i.e. it is safe to archive. False keeps the entry but withholds the
+     * recommendation, because "delete the other database" must never be advised
+     * on a guess.
+     */
+    readonly safeToArchive: boolean;
+    /** Human-readable justification, suitable for printing verbatim. */
+    readonly reason: string;
+}
+/** Result of {@link scanSupersededStores}. */
+export interface SupersededStoreScanResult {
+    /** Absolute project root that was scanned. */
+    readonly projectRoot: string;
+    /** Absolute path of the live dual-scope store. */
+    readonly liveStorePath: string;
+    /** Whether the live store exists — when false, nothing is superseded. */
+    readonly liveStoreExists: boolean;
+    /** Superseded files found, newest-modified first. */
+    readonly entries: readonly SupersededStoreEntry[];
+}
+/** The dual-scope store filename (ADR-068). */
+export declare const LIVE_STORE_FILENAME = "cleo.db";
+/**
+ * Scan a project for store files superseded by `cleo.db`.
+ *
+ * Read-only — deletes nothing and opens nothing for write. The caller decides
+ * what to do with the recommendation.
+ *
+ * @param projectRoot - absolute path to the project root.
+ * @returns the survey; `entries` is empty for a project that never migrated or
+ *   that has already been tidied.
+ *
+ * @example
+ * ```ts
+ * const scan = scanSupersededStores('/mnt/projects/PepsVida');
+ * for (const e of scan.entries) console.log(e.name, e.reason);
+ * // tasks.db  superseded by cleo.db: 0 rows here vs 1123 in cleo.db#tasks_tasks …
+ * ```
+ *
+ * @task T12095
+ */
+export declare function scanSupersededStores(projectRoot: string): SupersededStoreScanResult;
+//# sourceMappingURL=superseded-store.d.ts.map

package/dist/doctor/superseded-store.d.ts.map

@@ -0,0 +1 @@
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package/dist/doctor/superseded-store.js

@@ -0,0 +1,156 @@
+/**
+ * Detect pre-dual-scope store files left on disk under their old LIVE names.
+ *
+ * ## The failure this exists to stop (T12095)
+ *
+ * Before the E6 dual-scope migration (ADR-068), a project's task database was
+ * `.cleo/tasks.db`. Afterwards it is `.cleo/cleo.db`, and task rows live in
+ * PREFIXED tables (`tasks_tasks`, `tasks_sessions`, …) rather than bare `tasks`.
+ * The migration does not delete the old file, so a migrated project has
+ *
+ *     .cleo/cleo.db     60 MB   modified today      ← the real store
+ *     .cleo/tasks.db   408 KB   modified in June    ← superseded, still named
+ *                                                     as though it were live
+ *
+ * Three separate things then point an agent at the wrong file:
+ *
+ * 1. The old name is the one every doc, ADR-013 §9 note and `cleo restore
+ *    backup --file tasks.db` invocation still says out loud.
+ * 2. Snapshots are written as `.cleo/backups/sqlite/tasks-<ts>.db` even though
+ *    they are snapshots of `cleo.db`. So the superseded 408 KB file sits beside
+ *    58 MB files bearing its own name — which reads unmistakably as truncation.
+ * 3. `cleo.db` ALSO contains a bare, empty `tasks` table next to the populated
+ *    `tasks_tasks`. Any direct SQL probe finds the empty decoy.
+ *
+ * Measured on 2026-08-09: an agent in a healthy project with 1,123 tasks looped
+ * on "the current tasks.db is 417KB which is much smaller than the backups
+ * (58MB) — maybe it was rotated/rebuilt", then began theorising that the real
+ * store might be `llmtxt.db`. Nothing was wrong with the data. The layout
+ * manufactured a corruption signal, and the agent believed it over the CLI.
+ *
+ * This check names the file, proves which store is authoritative by counting
+ * rows in both, and says what to do — so the question is answered in one call
+ * instead of becoming an investigation.
+ *
+ * @task T12095
+ * @see ADR-068 — dual-scope DB chokepoint
+ */
+import { existsSync, statSync } from 'node:fs';
+import { join } from 'node:path';
+import { DatabaseSync } from 'node:sqlite';
+/**
+ * Legacy store filenames paired with the live table that replaced their
+ * contents. The bare table name is the pre-migration one; the prefixed name is
+ * where the rows live now.
+ */
+const SUPERSEDED_STORES = [
+    { file: 'tasks.db', bareTable: 'tasks', liveTable: 'tasks_tasks' },
+    { file: 'brain.db', bareTable: 'brain_observations', liveTable: 'brain_observations' },
+];
+/** The dual-scope store filename (ADR-068). */
+export const LIVE_STORE_FILENAME = 'cleo.db';
+/**
+ * Count rows in a table, or `null` when the table or file is unreadable.
+ *
+ * Read-only and never throws: a superseded file may be truncated, locked, or
+ * not even SQLite, and none of that should break the survey.
+ */
+function countRows(dbPath, table) {
+    if (!existsSync(dbPath))
+        return null;
+    let db = null;
+    try {
+        // db-open-allowed: read-only forensic probe of a SUPERSEDED file no accessor owns — routing it through the chokepoint would register a live handle for the very store we are proving is dead
+        db = new DatabaseSync(dbPath, { readOnly: true }); // db-open-allowed: read-only probe of a superseded, unowned file
+        const exists = db
+            .prepare("SELECT 1 AS ok FROM sqlite_master WHERE type='table' AND name = ?")
+            .get(table);
+        if (exists === undefined)
+            return null;
+        const row = db.prepare(`SELECT COUNT(*) AS c FROM "${table}"`).get();
+        return row?.c ?? null;
+    }
+    catch {
+        return null;
+    }
+    finally {
+        try {
+            db?.close();
+        }
+        catch {
+            /* already closed or never opened */
+        }
+    }
+}
+/**
+ * Scan a project for store files superseded by `cleo.db`.
+ *
+ * Read-only — deletes nothing and opens nothing for write. The caller decides
+ * what to do with the recommendation.
+ *
+ * @param projectRoot - absolute path to the project root.
+ * @returns the survey; `entries` is empty for a project that never migrated or
+ *   that has already been tidied.
+ *
+ * @example
+ * ```ts
+ * const scan = scanSupersededStores('/mnt/projects/PepsVida');
+ * for (const e of scan.entries) console.log(e.name, e.reason);
+ * // tasks.db  superseded by cleo.db: 0 rows here vs 1123 in cleo.db#tasks_tasks …
+ * ```
+ *
+ * @task T12095
+ */
+export function scanSupersededStores(projectRoot) {
+    const liveStorePath = join(projectRoot, '.cleo', LIVE_STORE_FILENAME);
+    const liveStoreExists = existsSync(liveStorePath);
+    if (!liveStoreExists) {
+        // No dual-scope store means nothing has been superseded — a pre-migration
+        // project's `tasks.db` IS its live database and must not be flagged.
+        return { projectRoot, liveStorePath, liveStoreExists: false, entries: [] };
+    }
+    const liveMtimeMs = statSync(liveStorePath).mtimeMs;
+    const entries = [];
+    for (const { file, bareTable, liveTable } of SUPERSEDED_STORES) {
+        const path = join(projectRoot, '.cleo', file);
+        if (!existsSync(path))
+            continue;
+        const stat = statSync(path);
+        // A file NEWER than cleo.db is not obviously dead — say nothing rather than
+        // risk advising removal of something still being written.
+        if (stat.mtimeMs >= liveMtimeMs)
+            continue;
+        const rowsInSuperseded = countRows(path, bareTable);
+        const rowsInLive = countRows(liveStorePath, liveTable);
+        // `rowsInSuperseded === 0` must be EXPLICIT, never `?? 0`. `null` means the
+        // file could not be read — corrupt, locked, truncated, or not SQLite — and
+        // "I could not read it" is not "it is empty". Coalescing the two would
+        // recommend archiving precisely the file whose contents are unknown, which
+        // is the one case where being wrong loses data.
+        const safeToArchive = (rowsInLive ?? 0) > 0 && rowsInSuperseded === 0;
+        const reason = safeToArchive
+            ? `superseded by ${LIVE_STORE_FILENAME}: ${rowsInSuperseded ?? 0} rows in ${file}#${bareTable} ` +
+                `vs ${rowsInLive} in ${LIVE_STORE_FILENAME}#${liveTable}. Last written ` +
+                `${stat.mtime.toISOString().slice(0, 10)}, while ${LIVE_STORE_FILENAME} was written ` +
+                `${new Date(liveMtimeMs).toISOString().slice(0, 10)}. Its name is the one the docs and ` +
+                `\`cleo restore backup --file tasks.db\` still say, and snapshots are named ` +
+                `\`tasks-<ts>.db\` even though they snapshot ${LIVE_STORE_FILENAME} — so this file reads ` +
+                `as a truncated live DB when it is simply the pre-migration one.`
+            : `predates ${LIVE_STORE_FILENAME} but still holds ${rowsInSuperseded ?? 'an unknown number of'} ` +
+                `rows in ${bareTable} (live ${liveTable}: ${rowsInLive ?? 'unreadable'}). NOT recommended for ` +
+                `removal — reconcile the contents first.`;
+        entries.push({
+            path,
+            name: file,
+            sizeBytes: stat.size,
+            modifiedAt: stat.mtime.toISOString(),
+            rowsInSuperseded,
+            rowsInLive,
+            safeToArchive,
+            reason,
+        });
+    }
+    entries.sort((a, b) => Date.parse(b.modifiedAt) - Date.parse(a.modifiedAt));
+    return { projectRoot, liveStorePath, liveStoreExists: true, entries };
+}
+//# sourceMappingURL=superseded-store.js.map

package/dist/doctor/superseded-store.js.map

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package/dist/llm/conversation.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"conversation.d.ts","sourceRoot":"","sources":["../../src/llm/conversation.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAaH;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,GAAG,MAAM,CAkBnF;AAiFD;;;;;;;GAOG;AACH,wBAAgB,qBAAqB,CACnC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,EACxC,SAAS,EAAE,MAAM,EACjB,cAAc,UAAO,GACpB,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAkChC"}
+{"version":3,"file":"conversation.d.ts","sourceRoot":"","sources":["../../src/llm/conversation.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAwBH;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,GAAG,MAAM,CAkBnF;AAiFD;;;;;;;GAOG;AACH,wBAAgB,qBAAqB,CACnC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,EACxC,SAAS,EAAE,MAAM,EACjB,cAAc,UAAO,GACpB,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAkChC"}

package/dist/llm/conversation.js

@@ -8,11 +8,22 @@
  * @epic T1386
  */
 import { getEncoding } from 'js-tiktoken';
-const _enc = getEncoding('cl100k_base');
+/**
+ * Lazily-built cl100k_base encoder.
+ *
+ * T12076: this was `const _enc = getEncoding('cl100k_base')` at MODULE SCOPE.
+ * `getEncoding` parses the BPE vocabulary, measured at 156 ms, and this module is
+ * reachable from the `@cleocode/core` barrel — so every `cleo` invocation built a
+ * tokenizer table before doing anything, including commands that never count a
+ * token. Deferring to first use keeps the surrounding API synchronous (the static
+ * import stays; only the table build moves) while removing the cost from startup.
+ */
+let _enc = null;
 /**
  * Estimate token count for a string using tiktoken cl100k_base.
  */
 function estimateTokens(text) {
+    _enc ??= getEncoding('cl100k_base');
     return _enc.encode(text).length;
 }
 /**

package/dist/llm/conversation.js.map

@@ -1 +1 @@
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