@cleocode/core 2026.6.2 → 2026.6.4

package/dist/store/exodus/types.d.ts

@@ -28,8 +28,17 @@ export interface LegacyDbDescriptor {
 /**
  * Per-table migration status tracked inside the staging journal
  * (`exodus-journal.json`).
+ *
+ * - `pending`  — not yet attempted.
+ * - `done`     — copied with no row deficit.
+ * - `skipped`  — intentionally not copied (no consolidated home, empty source, …).
+ * - `partial`  — copied, but with a KNOWN-recovered / known-lossy row deficit on
+ *   a non-data-bearing or already-reconciled table. Recorded so the table does
+ *   NOT masquerade as `done`, yet a single belt-and-suspenders deficit does not
+ *   trip a scope-wide rollback. A genuine deficit on a data-bearing BASE table
+ *   still aborts via the parity gate ({@link isDataContinuityOk}). (T11782 · FIX C.)
  */
-export type TableMigrationStatus = 'pending' | 'done' | 'skipped';
+export type TableMigrationStatus = 'pending' | 'done' | 'skipped' | 'partial';
 /** Journal entry for one source table. */
 export interface JournalTableEntry {
     readonly sourceDb: string;

package/dist/store/exodus/types.d.ts.map

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package/dist/store/exodus/types.js.map

@@ -1 +1 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/store/exodus/types.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AA4JH;;;;;;;GAOG;AACH,MAAM,CAAC,MAAM,4BAA4B,GAAG,wCAAiD,CAAC"}
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/store/exodus/types.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAqKH;;;;;;;GAOG;AACH,MAAM,CAAC,MAAM,4BAA4B,GAAG,wCAAiD,CAAC"}

package/dist/store/exodus/verify-migration.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"verify-migration.d.ts","sourceRoot":"","sources":["../../../src/store/exodus/verify-migration.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAyCG;AAKH,OAAO,KAAK,EAIV,qBAAqB,EACtB,MAAM,qBAAqB,CAAC;AAK7B,OAAO,KAAK,EAAe,kBAAkB,EAAE,MAAM,YAAY,CAAC;AA2clE;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AACH,wBAAgB,eAAe,CAC7B,OAAO,EAAE,kBAAkB,EAAE,EAC7B,aAAa,EAAE,MAAM,EACrB,YAAY,EAAE,MAAM,EACpB,UAAU,CAAC,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,IAAI,GACjC,qBAAqB,CAqRvB"}

package/dist/store/exodus/verify-migration.js

@@ -112,8 +112,19 @@ function computeTableDigest(db, tableName, columns) {
         log.warn({ tableName, err: msg }, 'computeTableDigest: SELECT failed (possibly a virtual/FTS table) — treating as 0 rows');
         return { count: 0, hash: '' };
     }
+    // Canonicalise each row's property order before hashing (T11782 · FIX A).
+    //
+    // `JSON.stringify(row)` serialises object keys in the SQLite driver's row
+    // property-insertion order, which is NOT guaranteed identical between the
+    // SOURCE snapshot and the TARGET snapshot for the same logical row (the two
+    // handles may materialise columns in a different order). Identical data would
+    // then digest to a DIFFERENT hash, producing a false `hashMatch === false`
+    // and — historically — false-negative aborts. Passing the SORTED key array as
+    // `JSON.stringify`'s `replacer` forces a canonical, order-independent
+    // serialisation so identical rows always digest identically.
     for (const row of rows) {
-        hasher.update(JSON.stringify(row));
+        const rowObj = row;
+        hasher.update(JSON.stringify(rowObj, Object.keys(rowObj).sort()));
     }
     return {
         count: rows.length,

package/dist/store/exodus/verify-migration.js.map

@@ -1 +1 @@
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package/dist/store/sqlite.d.ts

@@ -38,6 +38,22 @@ export declare const SQLITE_SCHEMA_VERSION = "2.0.0";
  * created (existence / backup / health probes) point at the correct file.
  */
 export declare function getDbPath(cwd?: string): string;
+/**
+ * See the doc block above {@link countBackupTasks} for the full T5188/T11662
+ * rationale. Exported (rather than module-private) ONLY so the T11662 concurrency
+ * regression test can drive ≥4 racing invocations against a single `cleo.db` and
+ * assert exactly one restore occurs under the shared first-open lock. Production
+ * code MUST reach this solely via {@link getDb}.
+ *
+ * @param nativeDb - The freshly-opened consolidated handle (its `tasks_tasks` is
+ *   probed for emptiness; closed before the file is overwritten on the restore path).
+ * @param dbPath - Absolute path to the consolidated project `cleo.db`.
+ * @param cwd - Working directory used to resolve the `.cleo/backups/sqlite/` dir.
+ * @internal
+ * @task T5188
+ * @task T11662
+ */
+export declare function autoRecoverFromBackup(nativeDb: DatabaseSync, dbPath: string, cwd: string | undefined): Promise<void>;
 /**
  * Open (or return cached) the drizzle tasks-schema handle for the project scope.
  *

package/dist/store/sqlite.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sqlite.d.ts","sourceRoot":"","sources":["../../src/store/sqlite.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAWH,OAAO,KAAK,EAAwB,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAgCxF,OAAO,EAAE,KAAK,YAAY,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAI3E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEvD,OAAO,KAAK,MAAM,MAAM,mBAAmB,CAAC;AA6B5C,0EAA0E;AAC1E,eAAO,MAAM,qBAAqB,UAAU,CAAC;AAU7C;;;;;;;;;GASG;AACH,wBAAgB,SAAS,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,CAE9C;AA6JD;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,KAAK,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,CAAC,OAAO,MAAM,CAAC,CAAC,CA+EpF;AAED;;;;;;;GAOG;AACH,wBAAgB,uBAAuB,IAAI,MAAM,CAEhD;AAED;;GAEG;AAGH,qDAAqD;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAiFtD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,OAAO,IAAI,IAAI,CAwB9B;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,YAAY,IAAI,IAAI,CAenC;AAED;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAQ3E;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,QAAQ,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAE9C;AAED;;;;GAIG;AACH,wBAAgB,WAAW,IAAI,YAAY,GAAG,IAAI,CAEjD;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,IAAI,YAAY,GAAG,IAAI,CAEtD;AAED,YAAY,EAAE,kBAAkB,EAAE,CAAC;AACnC;;GAEG;AACH,OAAO,EAAE,MAAM,EAAE,CAAC;AAElB;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,IAAI,CAAC,CAmBvD"}
+{"version":3,"file":"sqlite.d.ts","sourceRoot":"","sources":["../../src/store/sqlite.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAWH,OAAO,KAAK,EAAwB,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAiCxF,OAAO,EAAE,KAAK,YAAY,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAI3E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEvD,OAAO,KAAK,MAAM,MAAM,mBAAmB,CAAC;AA6B5C,0EAA0E;AAC1E,eAAO,MAAM,qBAAqB,UAAU,CAAC;AAU7C;;;;;;;;;GASG;AACH,wBAAgB,SAAS,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,CAE9C;AAkID;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,qBAAqB,CACzC,QAAQ,EAAE,YAAY,EACtB,MAAM,EAAE,MAAM,EACd,GAAG,EAAE,MAAM,GAAG,SAAS,GACtB,OAAO,CAAC,IAAI,CAAC,CAsIf;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,KAAK,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,CAAC,OAAO,MAAM,CAAC,CAAC,CA+EpF;AAED;;;;;;;GAOG;AACH,wBAAgB,uBAAuB,IAAI,MAAM,CAEhD;AAED;;GAEG;AAGH,qDAAqD;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAiFtD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,OAAO,IAAI,IAAI,CAwB9B;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,YAAY,IAAI,IAAI,CAenC;AAED;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAQ3E;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,QAAQ,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAE9C;AAED;;;;GAIG;AACH,wBAAgB,WAAW,IAAI,YAAY,GAAG,IAAI,CAEjD;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,IAAI,YAAY,GAAG,IAAI,CAEtD;AAED,YAAY,EAAE,kBAAkB,EAAE,CAAC;AACnC;;GAEG;AACH,OAAO,EAAE,MAAM,EAAE,CAAC;AAElB;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,IAAI,CAAC,CAmBvD"}

package/dist/store/sqlite.js

@@ -30,6 +30,7 @@ import { getLogger } from '../logger.js';
 // for the consolidated cleo.db. We extract the native handle and re-wrap it
 // with the legacy tasks-schema drizzle instance for E6 caller compatibility.
 import { _resetDualScopeDbCache, openDualScopeDb, resolveDualScopeDbPath, } from './dual-scope-db.js';
+import { withLock } from './lock.js';
 import { createSafetyBackup, ensureColumns, migrateWithRetry, reconcileJournal, tableExists, } from './migration-manager.js';
 import { resolveCorePackageMigrationsFolder } from './resolve-migrations-folder.js';
 import { listSqliteBackups } from './sqlite-backup.js';
@@ -98,6 +99,70 @@ export function getDbPath(cwd) {
  * @task T5188
  */
 const MIN_BACKUP_TASK_COUNT = 10;
+/**
+ * Inter-process lock suffix shared by the two destructive first-open paths that
+ * both fire on the `tasks_tasks == 0` (empty-consolidated-`cleo.db`) condition:
+ *
+ *  - {@link autoRecoverFromBackup} (T5188) — restore a `tasks-*.db` snapshot over
+ *    the live `cleo.db` file (closes the handle, unlinks the WAL, overwrites the
+ *    DB file via copy+rename).
+ *  - `maybeRunExodusOnOpen` (`exodus/on-open.ts`, T11553) — copy the legacy fleet
+ *    into the same `cleo.db` under a single-flight lock keyed by this suffix.
+ *
+ * Before T11662 these paths used DIFFERENT (or, for auto-recovery, NO) locks, so
+ * they could run concurrently against the same file in two processes — one
+ * unlinking the WAL while the other was mid-copy → a torn WAL frame and
+ * `"database disk image is malformed"` (observed on a live 4 687-task DB under 3
+ * concurrent agents).
+ *
+ * Auto-recovery now contends on the SAME lock the exodus path uses
+ * (`<cleo.db>.exodus-on-open.lock`). Mutual exclusion is therefore guaranteed in
+ * BOTH directions: while exodus holds the lock copying the fleet, auto-recovery
+ * blocks; while auto-recovery holds it restoring a snapshot, exodus blocks. The
+ * winner re-checks `tasks_tasks` under the lock (double-checked locking) and the
+ * loser early-exits without touching the WAL or the DB file.
+ *
+ * @task T11662
+ * @see packages/core/src/store/exodus/on-open.ts — the exodus single-flight lock
+ */
+const FIRST_OPEN_LOCK_SUFFIX = '.exodus-on-open.lock';
+/**
+ * Re-count `tasks_tasks` from a FRESH read-only handle on the on-disk `cleo.db`,
+ * used as the double-checked-locking re-query inside {@link autoRecoverFromBackup}
+ * (T11662). A fresh handle is required because the caller's `nativeDb` is about
+ * to be (or has been) closed by the recovery path, and because another process
+ * may have populated the file (exodus or a sibling auto-recovery) while we were
+ * blocked acquiring the lock — a read through a stale cached handle would not see
+ * those committed rows.
+ *
+ * Returns `0` on any read failure (missing table / unreadable file) so a failed
+ * probe is treated as "still empty" and never falsely suppresses a needed
+ * recovery (the subsequent restore is itself idempotent under the lock).
+ *
+ * @param dbPath - Absolute path to the consolidated project `cleo.db`.
+ * @returns The current `tasks_tasks` row count, or `0` if it cannot be read.
+ * @task T11662
+ */
+async function recountTasksFromDisk(dbPath) {
+    const { openNativeDatabase } = await import('./sqlite-native.js');
+    let probe = null;
+    try {
+        probe = openNativeDatabase(dbPath, { readonly: true, enableWal: false });
+        const row = probe.prepare('SELECT COUNT(*) as cnt FROM tasks_tasks').get();
+        return row?.cnt ?? 0;
+    }
+    catch {
+        return 0;
+    }
+    finally {
+        try {
+            probe?.close();
+        }
+        catch {
+            /* already closed / never opened */
+        }
+    }
+}
 /**
  * Auto-recover from backup if the database has tables but zero tasks
  * and a backup with data exists.
@@ -112,7 +177,21 @@ const MIN_BACKUP_TASK_COUNT = 10;
  * backup exists with real data. If so, it closes the current connection,
  * replaces the DB file from backup, and re-opens.
  *
+ * ## Concurrency safety (T11662)
+ *
+ * The destructive restore (`close → unlink WAL → copy+rename DB file`) is wrapped
+ * in an inter-process lock keyed by {@link FIRST_OPEN_LOCK_SUFFIX} — the SAME
+ * lock the exodus first-open migration (`maybeRunExodusOnOpen`) uses. Both paths
+ * fire on the identical `tasks_tasks == 0` condition, so without a shared lock
+ * two processes could destroy the WAL / overwrite the DB file simultaneously,
+ * producing a torn WAL frame (`"database disk image is malformed"`). Under the
+ * lock the function re-queries `tasks_tasks` from a fresh on-disk handle
+ * (double-checked locking); if another process already recovered/migrated the
+ * data, it returns WITHOUT touching the WAL or DB file. Only the first winner
+ * performs the restore.
+ *
  * @task T5188
+ * @task T11662
  */
 /**
  * Count tasks in a backup snapshot, tolerant of the cutover (T11578 · AC1).
@@ -138,7 +217,22 @@ function countBackupTasks(backupDb) {
     }
     return 0;
 }
-async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
+/**
+ * See the doc block above {@link countBackupTasks} for the full T5188/T11662
+ * rationale. Exported (rather than module-private) ONLY so the T11662 concurrency
+ * regression test can drive ≥4 racing invocations against a single `cleo.db` and
+ * assert exactly one restore occurs under the shared first-open lock. Production
+ * code MUST reach this solely via {@link getDb}.
+ *
+ * @param nativeDb - The freshly-opened consolidated handle (its `tasks_tasks` is
+ *   probed for emptiness; closed before the file is overwritten on the restore path).
+ * @param dbPath - Absolute path to the consolidated project `cleo.db`.
+ * @param cwd - Working directory used to resolve the `.cleo/backups/sqlite/` dir.
+ * @internal
+ * @task T5188
+ * @task T11662
+ */
+export async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
     // Lazy import openNativeDatabase at runtime to avoid any static-import
     // binding on sqlite-native.ts at module-init time.
     const { openNativeDatabase } = await import('./sqlite-native.js');
@@ -177,44 +271,71 @@ async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
             // Backup also has very few tasks — not a reliable recovery source
             return;
         }
-        // We have an empty database AND a backup with data — auto-recover
-        log.warn({ dbPath, backupPath: newestBackup.path, backupTasks: backupTaskCount }, `Empty database detected with ${backupTaskCount}-task backup available. ` +
-            'Auto-recovering from backup. This likely happened because git-tracked ' +
-            'WAL/SHM files were overwritten during a branch switch (T5188).');
-        // Close current connection
-        nativeDb.close();
-        // Remove stale WAL/SHM files that may have been corrupted by git
-        const walPath = dbPath + '-wal';
-        const shmPath = dbPath + '-shm';
-        try {
-            unlinkSync(walPath);
-        }
-        catch {
-            /* may not exist */
-        }
-        try {
-            unlinkSync(shmPath);
-        }
-        catch {
-            /* may not exist */
-        }
-        // Restore from backup (atomic: copy to temp, rename)
-        const tempPath = dbPath + '.recovery-tmp';
-        copyFileSync(newestBackup.path, tempPath);
-        // Rename in place — on the same filesystem this is atomic
-        renameSync(tempPath, dbPath);
-        log.info({ dbPath, backupPath: newestBackup.path, restoredTasks: backupTaskCount }, 'Database auto-recovered from backup successfully.');
-        // Re-open the restored database — update the native singleton.
-        // The dual-scope cache is now stale (its nativeDb was closed above);
-        // reset it so the singleton is re-established on next getDb().
-        _resetDualScopeDbCache();
-        const restoredNativeDb = openNativeDatabase(dbPath);
-        _nativeDb = restoredNativeDb;
-        // Re-run migrations on restored DB to ensure schema is current
-        const restoredDb = _getDrizzle()({ client: restoredNativeDb, schema });
-        runMigrations(restoredNativeDb, restoredDb);
-        // Update the singleton drizzle instance
-        _db = restoredDb;
+        // ── Destructive restore under the shared first-open lock (T11662) ─────────
+        // Everything above is a cheap, side-effect-free probe; from here we mutate
+        // the live DB file + WAL. Serialise that against (a) any other concurrent
+        // autoRecoverFromBackup invocation and (b) the exodus first-open migration,
+        // BOTH of which contend on this exact lock for the same empty cleo.db.
+        const lockPath = dbPath + FIRST_OPEN_LOCK_SUFFIX;
+        await withLock(lockPath, async () => {
+            // Double-checked locking: while we were blocked acquiring the lock,
+            // another process (a sibling auto-recovery OR the exodus migration) may
+            // have already populated the DB. Re-query from a FRESH on-disk handle —
+            // the caller's `nativeDb` may be stale and cannot see another process's
+            // commits. If the data is now present, the restore is unnecessary →
+            // return WITHOUT touching the WAL or DB file.
+            const currentTaskCount = await recountTasksFromDisk(dbPath);
+            if (currentTaskCount > 0) {
+                log.info({ dbPath, currentTaskCount }, 'Auto-recovery skipped: database was populated by a concurrent process ' +
+                    'while acquiring the first-open lock (T11662 double-checked re-query).');
+                return;
+            }
+            // We are the lock winner over a still-empty DB AND have a backup with
+            // data — perform the restore.
+            log.warn({ dbPath, backupPath: newestBackup.path, backupTasks: backupTaskCount }, `Empty database detected with ${backupTaskCount}-task backup available. ` +
+                'Auto-recovering from backup. This likely happened because git-tracked ' +
+                'WAL/SHM files were overwritten during a branch switch (T5188).');
+            // Close current connection
+            if (nativeDb.isOpen) {
+                nativeDb.close();
+            }
+            // Remove stale WAL/SHM files that may have been corrupted by git
+            const walPath = dbPath + '-wal';
+            const shmPath = dbPath + '-shm';
+            try {
+                unlinkSync(walPath);
+            }
+            catch {
+                /* may not exist */
+            }
+            try {
+                unlinkSync(shmPath);
+            }
+            catch {
+                /* may not exist */
+            }
+            // Restore from backup (atomic: copy to temp, rename)
+            const tempPath = dbPath + '.recovery-tmp';
+            copyFileSync(newestBackup.path, tempPath);
+            // Rename in place — on the same filesystem this is atomic
+            renameSync(tempPath, dbPath);
+            log.info({ dbPath, backupPath: newestBackup.path, restoredTasks: backupTaskCount }, 'Database auto-recovered from backup successfully.');
+            // Re-open the restored database — update the native singleton.
+            // The dual-scope cache is now stale (its nativeDb was closed above);
+            // reset it so the singleton is re-established on next getDb().
+            _resetDualScopeDbCache();
+            const restoredNativeDb = openNativeDatabase(dbPath);
+            _nativeDb = restoredNativeDb;
+            // Re-run migrations on restored DB to ensure schema is current
+            const restoredDb = _getDrizzle()({ client: restoredNativeDb, schema });
+            runMigrations(restoredNativeDb, restoredDb);
+            // Update the singleton drizzle instance
+            _db = restoredDb;
+        }, 
+        // Allow a generous stale window + retries: an exodus migration holding this
+        // lock can take a while on a large fleet (matches on-open.ts), so a blocked
+        // auto-recovery must wait rather than time out and race.
+        { stale: 600_000, retries: 30 });
     }
     catch (err) {
         // Auto-recovery failure is non-fatal — log and continue with empty DB

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package/dist/validation/doctor/checks.d.ts

@@ -146,6 +146,28 @@ export declare function auditOrphanTempDirs(tempDirOverride?: string, maxAgeMs?:
  * then returns a single rolled-up CheckResult for the doctor summary.
  */
 export declare function checkJsonSchemaIntegrity(projectDir: string): Promise<CheckResult>;
+/**
+ * Detect stranded legacy source DBs after an exodus cutover.
+ *
+ * Once a scope's exodus completion marker (`exodus-complete`) exists, every one
+ * of the six legacy source DBs for that scope SHOULD have been archived into the
+ * scope's `_archive/` directory. A source still present on disk is "stranded
+ * residue" — it re-arms the `tasks_tasks=0` auto-recover / exodus-on-open
+ * corruption trigger (DHQ-052 · T11662). This check surfaces that residue so it
+ * can be archived via `cleo doctor exodus-residue --fix`.
+ *
+ * Read-only. Returns `'passed'` when no marker exists yet (a pre-cutover install
+ * where the legacy DBs are still the live source of truth — NOT residue) or when
+ * every marked scope's sources have been archived. Returns `'warning'` when
+ * residue is found (it is recoverable, never data-loss — the fix only MOVES
+ * files into `_archive/`).
+ *
+ * @param projectRoot - Project root used to resolve the project `.cleo/` dir.
+ * @returns A {@link CheckResult} describing stranded residue (if any).
+ *
+ * @task T11777
+ */
+export declare function checkExodusStrandedResidue(projectRoot?: string): Promise<CheckResult>;
 /**
  * Run all global health checks and return results array.
  * @task T4525

package/dist/validation/doctor/checks.d.ts.map

@@ -1 +1 @@
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package/dist/validation/doctor/checks.js

@@ -1280,6 +1280,73 @@ export async function checkJsonSchemaIntegrity(projectDir) {
         fix: null,
     };
 }
+// ============================================================================
+// Check: exodus stranded-residue (T11777)
+// ============================================================================
+/**
+ * Detect stranded legacy source DBs after an exodus cutover.
+ *
+ * Once a scope's exodus completion marker (`exodus-complete`) exists, every one
+ * of the six legacy source DBs for that scope SHOULD have been archived into the
+ * scope's `_archive/` directory. A source still present on disk is "stranded
+ * residue" — it re-arms the `tasks_tasks=0` auto-recover / exodus-on-open
+ * corruption trigger (DHQ-052 · T11662). This check surfaces that residue so it
+ * can be archived via `cleo doctor exodus-residue --fix`.
+ *
+ * Read-only. Returns `'passed'` when no marker exists yet (a pre-cutover install
+ * where the legacy DBs are still the live source of truth — NOT residue) or when
+ * every marked scope's sources have been archived. Returns `'warning'` when
+ * residue is found (it is recoverable, never data-loss — the fix only MOVES
+ * files into `_archive/`).
+ *
+ * @param projectRoot - Project root used to resolve the project `.cleo/` dir.
+ * @returns A {@link CheckResult} describing stranded residue (if any).
+ *
+ * @task T11777
+ */
+export async function checkExodusStrandedResidue(projectRoot) {
+    // Lazy import: keep the heavy exodus barrel out of the doctor module graph at
+    // load time; only the pure read helpers (plan + residue detect) are used here.
+    const { buildExodusPlan, detectStrandedResidue } = await import('../../store/exodus/index.js');
+    let stranded;
+    try {
+        const plan = buildExodusPlan(projectRoot);
+        stranded = detectStrandedResidue(plan.sources, projectRoot);
+    }
+    catch (err) {
+        return {
+            id: 'exodus_stranded_residue',
+            category: 'data',
+            status: 'warning',
+            message: `Could not run exodus stranded-residue check: ${err instanceof Error ? err.message : String(err)}`,
+            details: {},
+            fix: null,
+        };
+    }
+    if (stranded.length === 0) {
+        return {
+            id: 'exodus_stranded_residue',
+            category: 'data',
+            status: 'passed',
+            message: 'No stranded legacy exodus source DBs (clean cutover or pre-migration install)',
+            details: { strandedCount: 0 },
+            fix: null,
+        };
+    }
+    return {
+        id: 'exodus_stranded_residue',
+        category: 'data',
+        status: 'warning',
+        message: `${stranded.length} legacy exodus source DB(s) still present after cutover ` +
+            `(stranded residue re-arms the exodus-on-open corruption trigger): ` +
+            stranded.map((s) => `${s.name} (${s.scope})`).join(', '),
+        details: {
+            strandedCount: stranded.length,
+            stranded: stranded.map((s) => ({ name: s.name, path: s.path, scope: s.scope })),
+        },
+        fix: 'cleo doctor exodus-residue --fix',
+    };
+}
 /**
  * Run all global health checks and return results array.
  * @task T4525