@cleocode/core 2026.5.133 → 2026.6.0

package/dist/store/sqlite.d.ts

@@ -1,18 +1,25 @@
 /**
  * SQLite store via drizzle-orm/node-sqlite + node:sqlite (DatabaseSync).
  *
- * Zero native npm dependencies, 100% cross-platform (Windows/Linux/macOS).
- * File-backed SQLite with WAL mode for multi-process concurrent access.
- * Database stored at .cleo/tasks.db.
+ * ## E6-L1 — thin-facade migration (T11521)
  *
- * Architecture: node:sqlite provides the synchronous file-backed SQLite engine,
- * wrapped via drizzle-orm/node-sqlite for a fully synchronous interface. All
- * writes go directly to disk through SQLite's native WAL mechanism -- no
- * saveToFile() pattern needed.
+ * `getDb()` and `getNativeTasksDb()` are now thin facades that delegate the
+ * database open to {@link openDualScopeDb}('project', cwd) — the canonical
+ * dual-scope chokepoint introduced by E3/E4 (T11512/T11517). This ensures:
+ *
+ * - Every tasks.db open flows through the single pragma SSoT (ADR-068/069).
+ * - The worktree-isolation guard (T9806) fires consistently on all opens.
+ * - DB Open Guard Gate 3 (`scripts/lint-no-direct-db-open.mjs`) stays green.
+ *
+ * The legacy tables (`tasks`, `sessions`, `schema_meta`, …) are still created
+ * by `runMigrations` (drizzle-tasks folder) inside the shared `cleo.db` file
+ * during the E3→E6 transition period, co-existing with the new `tasks_tasks`
+ * prefix tables from the consolidated schema. E6-L7/L8 will remove them.
  *
  * @epic T4454
  * @task T4817 - node:sqlite engine migration (ADR-006, ADR-010)
  * @task T4810 - Data loss prevention guards
+ * @task T11521 - E6-L1: route getDb through openDualScopeDb (SG-DB-SUBSTRATE-V2)
  */
 import type { NodeSQLiteDatabase } from 'drizzle-orm/node-sqlite';
 export { type DatabaseSync, openNativeDatabase } from './sqlite-native.js';
@@ -21,13 +28,30 @@ import * as schema from './tasks-schema.js';
 /** Schema version for newly created databases. Single source of truth. */
 export declare const SQLITE_SCHEMA_VERSION = "2.0.0";
 /**
- * Get the path to the SQLite database file.
+ * Get the path to the SQLite database file that {@link getDb} opens.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * After the dual-scope migration, `getDb()` opens the consolidated project
+ * `cleo.db` via {@link openDualScopeDb}. This function therefore returns the
+ * dual-scope `cleo.db` path so that callers checking for the file `getDb()`
+ * created (existence / backup / health probes) point at the correct file.
  */
 export declare function getDbPath(cwd?: string): string;
 /**
- * Initialize the SQLite database (lazy, singleton).
- * Creates the database file and tables if they don't exist.
- * Returns the drizzle ORM instance (node-sqlite driver).
+ * Open (or return cached) the drizzle tasks-schema handle for the project scope.
+ *
+ * ## E6-L1 façade (T11521)
+ *
+ * Delegates the physical DB open to {@link openDualScopeDb}('project', cwd) —
+ * the canonical dual-scope chokepoint. The returned `NodeSQLiteDatabase` wraps
+ * the same `DatabaseSync` handle as the consolidated `cleo.db` but is typed
+ * against the legacy `tasks-schema` (table name `tasks`, etc.) so all existing
+ * callers compile without change.
+ *
+ * The legacy drizzle-tasks migrations are still applied to this handle during
+ * the E3→E6 transition, creating the `tasks` table family inside `cleo.db`
+ * alongside the new `tasks_tasks` tables. E6-L7/L8 will remove them.
  *
  * Uses a promise guard so concurrent callers wait for the same
  * initialization to complete (migrations are async).
@@ -49,12 +73,33 @@ export declare function resolveMigrationsFolder(): string;
 export { isSqliteBusy } from './migration-manager.js';
 /**
  * Close the database connection and release resources.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * Resets the dual-scope cache via {@link _resetDualScopeDbCache} so the next
+ * `getDb()` call re-initialises cleanly rather than receiving a stale cached
+ * handle whose `DatabaseSync` is already closed (which would produce
+ * "database is not open" errors in migration-manager).
+ *
+ * Without the cache eviction, `openDualScopeDb` would return the stale entry
+ * for the same (scope, cwd) key — its `DatabaseSync` already closed by
+ * `_nativeDb.close()` below — causing downstream "database is not open" errors
+ * in `runMigrations → tableExists` for the very next `getDb()` caller.
  */
 export declare function closeDb(): void;
 /**
  * Reset database singleton state without saving.
  * Used during migrations when database file is deleted and recreated.
  * Safe to call multiple times.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * Also resets the dual-scope cache via {@link _resetDualScopeDbCache} so the
+ * next `getDb()` opens a fresh handle rather than reusing a stale one.
+ * Mirrors the cache-eviction logic in {@link closeDb}.
+ *
+ * E6-L4 (T11524): scoped to `'project'` so it does not close the shared GLOBAL
+ * `cleo.db` handle (nexus/signaldock/skills) — see {@link closeDb}.
  */
 export declare function resetDbState(): void;
 /**
@@ -63,6 +108,16 @@ export declare function resetDbState(): void;
 export declare function getSchemaVersion(cwd?: string): Promise<string | null>;
 /**
  * Check if the database file exists.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * After the dual-scope migration, `getDb()` opens `cleo.db` via
+ * {@link openDualScopeDb} — not the legacy `tasks.db`. This function now
+ * checks for `cleo.db` so that callers (e.g. `migration-sqlite.ts`) correctly
+ * detect the E6 database and skip re-migration.
+ *
+ * {@link getDbPath} still returns the legacy `tasks.db` path for backward-compat
+ * callers that specifically need that file (e.g. backup path construction).
  */
 export declare function dbExists(cwd?: string): boolean;
 /**
@@ -73,7 +128,12 @@ export declare function dbExists(cwd?: string): boolean;
 export declare function getNativeDb(): DatabaseSync | null;
 /**
  * Get the underlying node:sqlite DatabaseSync instance for tasks.db.
- * Alias for getNativeDb() — mirrors getBrainNativeDb() naming convention.
+ *
+ * ## E6-L1 façade (T11521)
+ *
+ * Thin facade delegating to {@link getNativeDb}. After the chokepoint
+ * migration the native handle originates from {@link openDualScopeDb} —
+ * callers receive the same `DatabaseSync` from `cleo.db`.
  */
 export declare function getNativeTasksDb(): DatabaseSync | null;
 export type { NodeSQLiteDatabase };

package/dist/store/sqlite.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"sqlite.d.ts","sourceRoot":"","sources":["../../src/store/sqlite.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAWH,OAAO,KAAK,EAAwB,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAgCxF,OAAO,EAAE,KAAK,YAAY,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAI3E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEvD,OAAO,KAAK,MAAM,MAAM,mBAAmB,CAAC;AA6B5C,0EAA0E;AAC1E,eAAO,MAAM,qBAAqB,UAAU,CAAC;AAU7C;;;;;;;;;GASG;AACH,wBAAgB,SAAS,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,CAE9C;AA6JD;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,KAAK,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,CAAC,OAAO,MAAM,CAAC,CAAC,CA+EpF;AAED;;;;;;;GAOG;AACH,wBAAgB,uBAAuB,IAAI,MAAM,CAEhD;AAED;;GAEG;AAGH,qDAAqD;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAiFtD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,OAAO,IAAI,IAAI,CAwB9B;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,YAAY,IAAI,IAAI,CAenC;AAED;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAQ3E;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,QAAQ,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAE9C;AAED;;;;GAIG;AACH,wBAAgB,WAAW,IAAI,YAAY,GAAG,IAAI,CAEjD;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,IAAI,YAAY,GAAG,IAAI,CAEtD;AAED,YAAY,EAAE,kBAAkB,EAAE,CAAC;AACnC;;GAEG;AACH,OAAO,EAAE,MAAM,EAAE,CAAC;AAElB;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,IAAI,CAAC,CAmBvD"}

package/dist/store/sqlite.js

@@ -1,25 +1,35 @@
 /**
  * SQLite store via drizzle-orm/node-sqlite + node:sqlite (DatabaseSync).
  *
- * Zero native npm dependencies, 100% cross-platform (Windows/Linux/macOS).
- * File-backed SQLite with WAL mode for multi-process concurrent access.
- * Database stored at .cleo/tasks.db.
+ * ## E6-L1 — thin-facade migration (T11521)
  *
- * Architecture: node:sqlite provides the synchronous file-backed SQLite engine,
- * wrapped via drizzle-orm/node-sqlite for a fully synchronous interface. All
- * writes go directly to disk through SQLite's native WAL mechanism -- no
- * saveToFile() pattern needed.
+ * `getDb()` and `getNativeTasksDb()` are now thin facades that delegate the
+ * database open to {@link openDualScopeDb}('project', cwd) — the canonical
+ * dual-scope chokepoint introduced by E3/E4 (T11512/T11517). This ensures:
+ *
+ * - Every tasks.db open flows through the single pragma SSoT (ADR-068/069).
+ * - The worktree-isolation guard (T9806) fires consistently on all opens.
+ * - DB Open Guard Gate 3 (`scripts/lint-no-direct-db-open.mjs`) stays green.
+ *
+ * The legacy tables (`tasks`, `sessions`, `schema_meta`, …) are still created
+ * by `runMigrations` (drizzle-tasks folder) inside the shared `cleo.db` file
+ * during the E3→E6 transition period, co-existing with the new `tasks_tasks`
+ * prefix tables from the consolidated schema. E6-L7/L8 will remove them.
  *
  * @epic T4454
  * @task T4817 - node:sqlite engine migration (ADR-006, ADR-010)
  * @task T4810 - Data loss prevention guards
+ * @task T11521 - E6-L1: route getDb through openDualScopeDb (SG-DB-SUBSTRATE-V2)
  */
-import { copyFileSync, existsSync, mkdirSync, renameSync, unlinkSync } from 'node:fs';
+import { copyFileSync, existsSync, renameSync, unlinkSync } from 'node:fs';
 import { createRequire } from 'node:module';
-import { dirname, join, resolve, sep } from 'node:path';
 import { eq } from 'drizzle-orm';
 import { getLogger } from '../logger.js';
-import { resolveCleoDir } from '../paths.js';
+// T11521: dual-scope chokepoint — all tasks.db opens now flow through here.
+// openDualScopeDb manages the DatabaseSync lifecycle, pragmas, and migrations
+// for the consolidated cleo.db. We extract the native handle and re-wrap it
+// with the legacy tasks-schema drizzle instance for E6 caller compatibility.
+import { _resetDualScopeDbCache, openDualScopeDb, resolveDualScopeDbPath, } from './dual-scope-db.js';
 import { createSafetyBackup, ensureColumns, migrateWithRetry, reconcileJournal, tableExists, } from './migration-manager.js';
 import { resolveCorePackageMigrationsFolder } from './resolve-migrations-folder.js';
 import { listSqliteBackups } from './sqlite-backup.js';
@@ -60,8 +70,6 @@ function _getDrizzle() {
     }
     return _drizzle;
 }
-/** Database file name within .cleo/ directory. */
-const DB_FILENAME = 'tasks.db';
 /** Schema version for newly created databases. Single source of truth. */
 export const SQLITE_SCHEMA_VERSION = '2.0.0';
 const SCHEMA_VERSION = SQLITE_SCHEMA_VERSION;
@@ -71,13 +79,18 @@ let _nativeDb = null;
 let _dbPath = null;
 /** Guard against concurrent initialization (async migration). */
 let _initPromise = null;
-/** Guard: git-tracking check runs only once per process. */
-let _gitTrackingChecked = false;
 /**
- * Get the path to the SQLite database file.
+ * Get the path to the SQLite database file that {@link getDb} opens.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * After the dual-scope migration, `getDb()` opens the consolidated project
+ * `cleo.db` via {@link openDualScopeDb}. This function therefore returns the
+ * dual-scope `cleo.db` path so that callers checking for the file `getDb()`
+ * created (existence / backup / health probes) point at the correct file.
  */
 export function getDbPath(cwd) {
-    return join(resolveCleoDir(cwd), DB_FILENAME);
+    return resolveDualScopeDbPath('project', cwd);
 }
 /**
  * Minimum task count in a backup to consider it a valid recovery source.
@@ -101,14 +114,41 @@ const MIN_BACKUP_TASK_COUNT = 10;
  *
  * @task T5188
  */
+/**
+ * Count tasks in a backup snapshot, tolerant of the cutover (T11578 · AC1).
+ *
+ * Post-exodus snapshots of the consolidated `cleo.db` carry the prefixed
+ * `tasks_tasks` table; legacy pre-consolidation `tasks.db` snapshots carry the
+ * bare `tasks` table. Prefer the prefixed table, falling back to the bare one
+ * when the prefixed table is absent, so auto-recovery keeps working across the
+ * substrate transition.
+ *
+ * @param backupDb - Read-only handle to the backup snapshot.
+ * @returns Task row count, or 0 if neither table exists / the read fails.
+ */
+function countBackupTasks(backupDb) {
+    for (const table of ['tasks_tasks', 'tasks']) {
+        try {
+            const row = backupDb.prepare(`SELECT COUNT(*) as cnt FROM "${table}"`).get();
+            return row?.cnt ?? 0;
+        }
+        catch {
+            // Table missing in this snapshot — try the next candidate.
+        }
+    }
+    return 0;
+}
 async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
     // Lazy import openNativeDatabase at runtime to avoid any static-import
     // binding on sqlite-native.ts at module-init time.
     const { openNativeDatabase } = await import('./sqlite-native.js');
     const log = getLogger('sqlite');
     try {
-        // Count tasks in current database
-        const countResult = nativeDb.prepare('SELECT COUNT(*) as cnt FROM tasks').get();
+        // Count tasks in current database.
+        // T11578 · AC1: the runtime now reads the PREFIXED consolidated table, so the
+        // emptiness probe targets `tasks_tasks` (the exodus-fill target) rather than
+        // the now-dead bare `tasks` table.
+        const countResult = nativeDb.prepare('SELECT COUNT(*) as cnt FROM tasks_tasks').get();
         const taskCount = countResult?.cnt ?? 0;
         if (taskCount > 0)
             return; // Database has data, no recovery needed
@@ -125,8 +165,10 @@ async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
         const backupDb = openNativeDatabase(newestBackup.path, { readonly: true, enableWal: false });
         let backupTaskCount = 0;
         try {
-            const backupCount = backupDb.prepare('SELECT COUNT(*) as cnt FROM tasks').get();
-            backupTaskCount = backupCount?.cnt ?? 0;
+            // T11578 · AC1: prefer the PREFIXED consolidated table (post-exodus
+            // snapshots) and fall back to the bare `tasks` table for legacy
+            // pre-consolidation backups so recovery still works across the cutover.
+            backupTaskCount = countBackupTasks(backupDb);
         }
         finally {
             backupDb.close();
@@ -162,7 +204,10 @@ async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
         // Rename in place — on the same filesystem this is atomic
         renameSync(tempPath, dbPath);
         log.info({ dbPath, backupPath: newestBackup.path, restoredTasks: backupTaskCount }, 'Database auto-recovered from backup successfully.');
-        // Re-open the restored database — update the native singleton
+        // Re-open the restored database — update the native singleton.
+        // The dual-scope cache is now stale (its nativeDb was closed above);
+        // reset it so the singleton is re-established on next getDb().
+        _resetDualScopeDbCache();
         const restoredNativeDb = openNativeDatabase(dbPath);
         _nativeDb = restoredNativeDb;
         // Re-run migrations on restored DB to ensure schema is current
@@ -177,22 +222,31 @@ async function autoRecoverFromBackup(nativeDb, dbPath, cwd) {
     }
 }
 /**
- * Initialize the SQLite database (lazy, singleton).
- * Creates the database file and tables if they don't exist.
- * Returns the drizzle ORM instance (node-sqlite driver).
+ * Open (or return cached) the drizzle tasks-schema handle for the project scope.
+ *
+ * ## E6-L1 façade (T11521)
+ *
+ * Delegates the physical DB open to {@link openDualScopeDb}('project', cwd) —
+ * the canonical dual-scope chokepoint. The returned `NodeSQLiteDatabase` wraps
+ * the same `DatabaseSync` handle as the consolidated `cleo.db` but is typed
+ * against the legacy `tasks-schema` (table name `tasks`, etc.) so all existing
+ * callers compile without change.
+ *
+ * The legacy drizzle-tasks migrations are still applied to this handle during
+ * the E3→E6 transition, creating the `tasks` table family inside `cleo.db`
+ * alongside the new `tasks_tasks` tables. E6-L7/L8 will remove them.
  *
  * Uses a promise guard so concurrent callers wait for the same
  * initialization to complete (migrations are async).
  */
 export async function getDb(cwd) {
-    const requestedPath = getDbPath(cwd);
     // T9961 / T9806: worktree-isolation guard — defense-in-depth for direct
-    // getDb() callers (61 core handlers) that bypass openCleoDb('tasks', cwd).
+    // getDb() callers that bypass openCleoDb('project', cwd).
     // Fires before any DB file is touched, matching the openCleoDb chokepoint.
     assertDbPathIsNotWorktreeResident('tasks', cwd);
-    // T1906: guard against prod-DB writes in test mode
-    const { assertTestEnv } = await import('./data-accessor.js');
-    assertTestEnv(requestedPath);
+    // Resolve the cleo.db path via the dual-scope helper (same logic as
+    // openDualScopeDb uses internally) to drive the singleton key.
+    const requestedPath = resolveDualScopeDbPath('project', cwd);
     // If singleton exists but points to different path, reset it
     if (_db && _dbPath !== requestedPath) {
         resetDbState();
@@ -203,19 +257,26 @@ export async function getDb(cwd) {
     if (_initPromise)
         return _initPromise;
     _initPromise = (async () => {
-        const dbPath = requestedPath;
-        _dbPath = dbPath;
-        // Ensure directory exists
-        mkdirSync(dirname(dbPath), { recursive: true });
-        // Open file-backed SQLite via node:sqlite with WAL mode.
-        // openNativeDatabase is re-exported from sqlite-native.ts — the actual
-        // function lives there (zero CLEO imports) so the cycle cannot TDZ it.
-        const { openNativeDatabase } = await import('./sqlite-native.js');
-        const nativeDb = openNativeDatabase(dbPath);
+        // ── Dual-scope chokepoint delegation (T11521 · E6-L1) ─────────────────
+        // openDualScopeDb applies pragma SSoT, creates the directory, runs cleo-project
+        // migrations, and manages the singleton cache. We extract its native handle
+        // so we can re-wrap it with the legacy tasks-schema for caller compatibility.
+        const dualHandle = await openDualScopeDb('project', cwd);
+        // Extract the underlying DatabaseSync. Drizzle exposes it via `$client`.
+        const nativeDb = dualHandle.db.$client ?? null;
+        if (!nativeDb) {
+            throw new Error('E6-L1: openDualScopeDb returned a handle without $client — ' +
+                'cannot extract DatabaseSync for legacy tasks-schema wrapping.');
+        }
         _nativeDb = nativeDb;
-        // Create drizzle ORM wrapper via node-sqlite
+        _dbPath = requestedPath;
+        // Wrap the native handle with the legacy tasks-schema drizzle instance.
+        // This allows all existing callers (using schema.tasks, schema.sessions, etc.)
+        // to continue querying the same DatabaseSync without change.
         const db = _getDrizzle()({ client: nativeDb, schema });
-        // Run drizzle migrations (creates/updates tables)
+        // Run legacy drizzle-tasks migrations against the shared cleo.db handle.
+        // During E3→E6 transition these create the old `tasks` table family alongside
+        // the new `tasks_tasks` tables from the consolidated schema migration.
         runMigrations(nativeDb, db);
         // Migration SQL contains PRAGMA foreign_keys=ON statements.
         // In test environments, disable FKs after migration to allow test
@@ -229,51 +290,7 @@ export async function getDb(cwd) {
         // Auto-recovery: detect empty database with available backups (T5188)
         // Root cause: git-tracked WAL/SHM files get overwritten on branch switch,
         // causing data loss when the WAL contained uncommitted writes.
-        await autoRecoverFromBackup(nativeDb, dbPath, cwd);
-        // Check if tasks.db or its WAL/SHM are dangerously tracked by git (ADR-013, T5158, T5188).
-        //
-        // As of ADR-013 §9 (2026-04-07) the canonical resolution is:
-        //   1. `.cleo/tasks.db` + WAL/SHM and `.cleo/brain.db` + WAL/SHM are
-        //      git-ignored at the project root and untracked via `git rm --cached`.
-        //   2. Recovery is provided by VACUUM INTO snapshots in
-        //      `.cleo/backups/sqlite/` (auto-rotated, 10 per DB, refreshed on
-        //      every `cleo session end` via the backup-session-end hook).
-        //   3. Full 4-file snapshots (including config.json + project-info.json)
-        //      are created on demand via `cleo backup add` / listed via
-        //      `cleo backup list` / restored via `cleo restore backup`.
-        //
-        // The warning below is retained as a regression guard: if someone
-        // accidentally re-stages the DB into project git, this warning fires at
-        // every process startup so they fix it before real data loss occurs.
-        if (!_gitTrackingChecked) {
-            _gitTrackingChecked = true;
-            try {
-                const { execFileSync } = await import('node:child_process');
-                const gitCwd = resolve(dbPath, '..', '..');
-                const filesToCheck = [dbPath, dbPath + '-wal', dbPath + '-shm'];
-                const log = getLogger('sqlite');
-                for (const fileToCheck of filesToCheck) {
-                    try {
-                        execFileSync('git', ['ls-files', '--error-unmatch', fileToCheck], {
-                            cwd: gitCwd,
-                            stdio: 'pipe',
-                        });
-                        // If we get here, the file IS tracked — that's dangerous.
-                        const basename = fileToCheck.split(/[\\/]/).pop();
-                        const relPath = fileToCheck.replace(gitCwd + sep, '');
-                        log.warn({ path: fileToCheck }, `${basename} is tracked by project git — this risks data loss on branch switch. ` +
-                            `Resolution (ADR-013 §9): \`git rm --cached ${relPath}\` and rely on ` +
-                            `\`.cleo/backups/sqlite/\` snapshots + \`cleo backup add\` for recovery.`);
-                    }
-                    catch {
-                        // Exit code 1 = not tracked = good
-                    }
-                }
-            }
-            catch {
-                // git not available, skip check
-            }
-        }
+        await autoRecoverFromBackup(nativeDb, requestedPath, cwd);
         // Set singleton only after migrations complete
         _db = db;
         return db;
@@ -375,8 +392,30 @@ function runMigrations(nativeDb, db) {
 }
 /**
  * Close the database connection and release resources.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * Resets the dual-scope cache via {@link _resetDualScopeDbCache} so the next
+ * `getDb()` call re-initialises cleanly rather than receiving a stale cached
+ * handle whose `DatabaseSync` is already closed (which would produce
+ * "database is not open" errors in migration-manager).
+ *
+ * Without the cache eviction, `openDualScopeDb` would return the stale entry
+ * for the same (scope, cwd) key — its `DatabaseSync` already closed by
+ * `_nativeDb.close()` below — causing downstream "database is not open" errors
+ * in `runMigrations → tableExists` for the very next `getDb()` caller.
  */
 export function closeDb() {
+    // Evict the PROJECT-scope dual-scope cache entries so the next openDualScopeDb()
+    // call opens a fresh DatabaseSync. Without this, the cache would return the
+    // stale handle whose nativeDb we're about to close below.
+    //
+    // E6-L4 (T11524): scope the eviction to `'project'`. The GLOBAL `cleo.db`
+    // handle (nexus/signaldock/skills) now shares this same cache; an unscoped
+    // reset here would close the global handle out from under an in-flight nexus
+    // query (e.g. nexusSyncAll holding a handle while readProjectMeta opens + closes
+    // a project accessor). Global teardown is the job of closeAllDatabases().
+    _resetDualScopeDbCache('project');
     if (_nativeDb) {
         try {
             if (_nativeDb.isOpen) {
@@ -384,7 +423,7 @@ export function closeDb() {
             }
         }
         catch {
-            // Ignore close errors
+            // Ignore close errors — _resetDualScopeDbCache already closed it
         }
         _nativeDb = null;
     }
@@ -396,8 +435,18 @@ export function closeDb() {
  * Reset database singleton state without saving.
  * Used during migrations when database file is deleted and recreated.
  * Safe to call multiple times.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * Also resets the dual-scope cache via {@link _resetDualScopeDbCache} so the
+ * next `getDb()` opens a fresh handle rather than reusing a stale one.
+ * Mirrors the cache-eviction logic in {@link closeDb}.
+ *
+ * E6-L4 (T11524): scoped to `'project'` so it does not close the shared GLOBAL
+ * `cleo.db` handle (nexus/signaldock/skills) — see {@link closeDb}.
  */
 export function resetDbState() {
+    _resetDualScopeDbCache('project');
     if (_nativeDb) {
         try {
             if (_nativeDb.isOpen) {
@@ -405,7 +454,7 @@ export function resetDbState() {
             }
         }
         catch {
-            // Ignore close errors
+            // Ignore close errors — _resetDualScopeDbCache already closed it
         }
         _nativeDb = null;
     }
@@ -426,9 +475,19 @@ export async function getSchemaVersion(cwd) {
 }
 /**
  * Check if the database file exists.
+ *
+ * ## E6-L1 (T11521)
+ *
+ * After the dual-scope migration, `getDb()` opens `cleo.db` via
+ * {@link openDualScopeDb} — not the legacy `tasks.db`. This function now
+ * checks for `cleo.db` so that callers (e.g. `migration-sqlite.ts`) correctly
+ * detect the E6 database and skip re-migration.
+ *
+ * {@link getDbPath} still returns the legacy `tasks.db` path for backward-compat
+ * callers that specifically need that file (e.g. backup path construction).
  */
 export function dbExists(cwd) {
-    return existsSync(getDbPath(cwd));
+    return existsSync(resolveDualScopeDbPath('project', cwd));
 }
 /**
  * Get the underlying node:sqlite DatabaseSync instance.
@@ -440,7 +499,12 @@ export function getNativeDb() {
 }
 /**
  * Get the underlying node:sqlite DatabaseSync instance for tasks.db.
- * Alias for getNativeDb() — mirrors getBrainNativeDb() naming convention.
+ *
+ * ## E6-L1 façade (T11521)
+ *
+ * Thin facade delegating to {@link getNativeDb}. After the chokepoint
+ * migration the native handle originates from {@link openDualScopeDb} —
+ * callers receive the same `DatabaseSync` from `cleo.db`.
  */
 export function getNativeTasksDb() {
     return _nativeDb;

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package/dist/store/tasks-schema.d.ts

@@ -16,6 +16,10 @@ export type { AgentErrorLogRow, AgentErrorType, AgentInstanceRow, AgentInstanceS
 export { AGENT_INSTANCE_STATUSES, AGENT_TYPES, agentErrorLog, agentInstances, } from './schema/agent-schema.js';
 export type { NewWarpChainInstanceRow, NewWarpChainRow, WarpChainInstanceRow, WarpChainRow, } from './schema/chain-schema.js';
 export { warpChainInstances, warpChains } from './schema/chain-schema.js';
+export type { NewTasksExternalTaskLinkRow as NewExternalTaskLinkRow, NewTasksSessionRow as NewSessionRow, NewTasksTaskAcceptanceCriteriaHistoryRow as NewTaskAcceptanceCriteriaHistoryRow, NewTasksTaskRow as NewTaskRow, TasksExternalTaskLinkRow as ExternalTaskLinkRow, TasksSessionRow as SessionRow, TasksTaskAcceptanceCriteriaHistoryRow as TaskAcceptanceCriteriaHistoryRow, TasksTaskDependencyRow as TaskDependencyRow, TasksTaskRelationRow as TaskRelationRow, TasksTaskRow as TaskRow, TasksTaskWorkHistoryRow as WorkHistoryRow, } from './schema/cleo-project/tasks-core.js';
+export { tasksAcceptanceProjectionDirty as acceptanceProjectionDirty, tasksAcceptanceProjectionState as acceptanceProjectionState, tasksExternalTaskLinks as externalTaskLinks, tasksSessionHandoffEntries as sessionHandoffEntries, tasksSessions as sessions, tasksTaskAcceptanceCriteria as taskAcceptanceCriteria, tasksTaskAcceptanceCriteriaHistory as taskAcceptanceCriteriaHistory, tasksTaskDependencies as taskDependencies, tasksTaskRelations as taskRelations, tasksTasks as tasks, tasksTaskWorkHistory as taskWorkHistory, } from './schema/cleo-project/tasks-core.js';
+export type { NewTasksEvidenceAcBindingRow as NewEvidenceAcBindingRow, NewTasksTaskLabelRow as NewTaskLabelRow, TasksEvidenceAcBindingRow as EvidenceAcBindingRow, TasksTaskLabelRow as TaskLabelRow, } from './schema/cleo-project/tasks-core-batch2.js';
+export { tasksEvidenceAcBindings as evidenceAcBindings, tasksTaskLabels as taskLabels, } from './schema/cleo-project/tasks-core-batch2.js';
 export * from './schema/index.js';
 export { ADR_STATUSES, type AdrStatus, GATE_STATUSES, type GateStatus, isValidStatus, LIFECYCLE_PIPELINE_STATUSES, LIFECYCLE_STAGE_STATUSES, MANIFEST_STATUSES, type ManifestStatus, type PipelineStatus, SESSION_STATUSES, type SessionStatus, type StageStatus, TASK_STATUSES, type TaskStatus, } from './status-registry.js';
 //# sourceMappingURL=tasks-schema.d.ts.map

package/dist/store/tasks-schema.d.ts.map

@@ -1 +1 @@
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