@cleocode/core 2026.4.7 → 2026.4.11

package/dist/memory/brain-retrieval.js

@@ -0,0 +1,542 @@
+/**
+ * BRAIN Retrieval Operations — 3-layer pattern (search -> timeline -> fetch).
+ *
+ * Provides token-efficient memory access modeled after claude-mem's
+ * search/timeline/get_observations workflow:
+ *
+ * 1. searchBrainCompact — lightweight index (IDs + titles, ~50 tokens/hit)
+ * 2. timelineBrain      — chronological context around an anchor entry
+ * 3. fetchBrainEntries  — full details for a filtered set of IDs
+ * 4. observeBrain       — unified save (observations table)
+ *
+ * Wave 2A provides the core implementations; Wave 2B wires them through
+ * the dispatch layer (engine-compat -> domain handler -> CLI gateway).
+ *
+ * @task T5131 T5132 T5133 T5134 T5135
+ * @epic T5149
+ */
+import { createHash } from 'node:crypto';
+import { memoryFindHitNext } from '../mvi-helpers.js';
+import { getBrainAccessor } from '../store/brain-accessor.js';
+import { sessionExistsInTasksDb } from '../store/cross-db-cleanup.js';
+import { getDb } from '../store/sqlite.js';
+import { typedAll } from '../store/typed-query.js';
+import { embedText, isEmbeddingAvailable } from './brain-embedding.js';
+import { searchBrain } from './brain-search.js';
+// ============================================================================
+// Layer 1: Compact Search
+// ============================================================================
+/**
+ * Token-efficient compact search across BRAIN tables.
+ * Returns index-level hits (~50 tokens per result).
+ *
+ * Delegates to searchBrain() from brain-search.ts for FTS5/LIKE search,
+ * then projects results to a compact format with optional date filtering.
+ *
+ * @param projectRoot - Project root directory
+ * @param params - Search parameters
+ * @returns Compact search results with token estimate
+ */
+export async function searchBrainCompact(projectRoot, params) {
+    const { query, limit, tables, dateStart, dateEnd } = params;
+    if (!query || !query.trim()) {
+        return { results: [], total: 0, tokensEstimated: 0 };
+    }
+    const searchResult = await searchBrain(projectRoot, query, {
+        limit: limit ?? 10,
+        tables,
+    });
+    // Project full results to compact format.
+    // Note: searchBrain() returns rows from raw SQL (nativeDb) which use
+    // snake_case column names, but the TypeScript types are camelCase.
+    // We handle both naming conventions for robustness.
+    let results = [];
+    for (const d of searchResult.decisions) {
+        const raw = d;
+        results.push({
+            id: d.id,
+            type: 'decision',
+            title: d.decision.slice(0, 80),
+            date: (d.createdAt ?? raw['created_at']) || '',
+        });
+    }
+    for (const p of searchResult.patterns) {
+        const raw = p;
+        results.push({
+            id: p.id,
+            type: 'pattern',
+            title: p.pattern.slice(0, 80),
+            date: (p.extractedAt ?? raw['extracted_at']) || '',
+        });
+    }
+    for (const l of searchResult.learnings) {
+        const raw = l;
+        results.push({
+            id: l.id,
+            type: 'learning',
+            title: l.insight.slice(0, 80),
+            date: (l.createdAt ?? raw['created_at']) || '',
+        });
+    }
+    for (const o of searchResult.observations) {
+        const raw = o;
+        results.push({
+            id: o.id,
+            type: 'observation',
+            title: o.title.slice(0, 80),
+            date: (o.createdAt ?? raw['created_at']) || '',
+        });
+    }
+    // Apply date filters client-side if provided
+    if (dateStart) {
+        results = results.filter((r) => r.date >= dateStart);
+    }
+    if (dateEnd) {
+        results = results.filter((r) => r.date <= dateEnd);
+    }
+    // Enrich each hit with _next progressive disclosure directives
+    for (const hit of results) {
+        hit._next = memoryFindHitNext(hit.id);
+    }
+    return {
+        results,
+        total: results.length,
+        tokensEstimated: results.length * 50,
+    };
+}
+// ============================================================================
+// Layer 2: Timeline
+// ============================================================================
+/**
+ * Determine the entry type from its ID prefix.
+ *
+ * Conventions:
+ * - D... -> decision (D001, D-xxx)
+ * - P... -> pattern  (P001, P-xxx)
+ * - L... -> learning (L001, L-xxx)
+ * - O... or CM-... -> observation (O-xxx, CM-xxx)
+ */
+function parseIdPrefix(id) {
+    if (id.startsWith('D-') || /^D\d/.test(id))
+        return 'decision';
+    if (id.startsWith('P-') || /^P\d/.test(id))
+        return 'pattern';
+    if (id.startsWith('L-') || /^L\d/.test(id))
+        return 'learning';
+    if (id.startsWith('O-') || id.startsWith('O') || id.startsWith('CM-'))
+        return 'observation';
+    return null;
+}
+/**
+ * Get chronological context around an anchor entry.
+ * Fetches the anchor's full data, then queries all 4 BRAIN tables
+ * via UNION ALL to find chronological neighbors.
+ *
+ * @param projectRoot - Project root directory
+ * @param params - Timeline parameters with anchor ID and depth
+ * @returns Anchor entry data with surrounding chronological entries
+ */
+export async function timelineBrain(projectRoot, params) {
+    const { anchor: anchorId, depthBefore = 3, depthAfter = 3 } = params;
+    // Ensure DB is initialized
+    const { getBrainDb, getBrainNativeDb } = await import('../store/brain-sqlite.js');
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb) {
+        return { anchor: null, before: [], after: [] };
+    }
+    // Determine anchor type and fetch it via accessor
+    const anchorType = parseIdPrefix(anchorId);
+    if (!anchorType) {
+        return { anchor: null, before: [], after: [] };
+    }
+    const accessor = await getBrainAccessor(projectRoot);
+    let anchorData = null;
+    let anchorDate = null;
+    switch (anchorType) {
+        case 'decision': {
+            const row = await accessor.getDecision(anchorId);
+            if (row) {
+                anchorData = row;
+                anchorDate = row.createdAt;
+            }
+            break;
+        }
+        case 'pattern': {
+            const row = await accessor.getPattern(anchorId);
+            if (row) {
+                anchorData = row;
+                anchorDate = row.extractedAt;
+            }
+            break;
+        }
+        case 'learning': {
+            const row = await accessor.getLearning(anchorId);
+            if (row) {
+                anchorData = row;
+                anchorDate = row.createdAt;
+            }
+            break;
+        }
+        case 'observation': {
+            const row = await accessor.getObservation(anchorId);
+            if (row) {
+                anchorData = row;
+                anchorDate = row.createdAt;
+            }
+            break;
+        }
+    }
+    if (!anchorData || !anchorDate) {
+        return { anchor: null, before: [], after: [] };
+    }
+    // UNION ALL across all 4 tables to get chronological neighbors.
+    // Excludes the anchor itself.
+    const beforeRows = typedAll(nativeDb.prepare(`
+    SELECT id, 'decision' AS type, created_at AS date FROM brain_decisions WHERE created_at < ? AND id != ?
+    UNION ALL
+    SELECT id, 'pattern' AS type, extracted_at AS date FROM brain_patterns WHERE extracted_at < ? AND id != ?
+    UNION ALL
+    SELECT id, 'learning' AS type, created_at AS date FROM brain_learnings WHERE created_at < ? AND id != ?
+    UNION ALL
+    SELECT id, 'observation' AS type, created_at AS date FROM brain_observations WHERE created_at < ? AND id != ?
+    ORDER BY date DESC
+    LIMIT ?
+  `), anchorDate, anchorId, anchorDate, anchorId, anchorDate, anchorId, anchorDate, anchorId, depthBefore);
+    const afterRows = typedAll(nativeDb.prepare(`
+    SELECT id, 'decision' AS type, created_at AS date FROM brain_decisions WHERE created_at > ? AND id != ?
+    UNION ALL
+    SELECT id, 'pattern' AS type, extracted_at AS date FROM brain_patterns WHERE extracted_at > ? AND id != ?
+    UNION ALL
+    SELECT id, 'learning' AS type, created_at AS date FROM brain_learnings WHERE created_at > ? AND id != ?
+    UNION ALL
+    SELECT id, 'observation' AS type, created_at AS date FROM brain_observations WHERE created_at > ? AND id != ?
+    ORDER BY date ASC
+    LIMIT ?
+  `), anchorDate, anchorId, anchorDate, anchorId, anchorDate, anchorId, anchorDate, anchorId, depthAfter);
+    return {
+        anchor: { id: anchorId, type: anchorType, data: anchorData },
+        before: beforeRows.map((r) => ({ id: r.id, type: r.type, date: r.date })),
+        after: afterRows.map((r) => ({ id: r.id, type: r.type, date: r.date })),
+    };
+}
+// ============================================================================
+// Layer 3: Batch Fetch
+// ============================================================================
+/**
+ * Batch-fetch full details by IDs.
+ * Groups IDs by prefix to query the correct tables via BrainDataAccessor.
+ *
+ * @param projectRoot - Project root directory
+ * @param params - Fetch parameters with IDs
+ * @returns Full entry data for each found ID, plus not-found list
+ */
+export async function fetchBrainEntries(projectRoot, params) {
+    const { ids } = params;
+    if (!ids || ids.length === 0) {
+        return { results: [], notFound: [], tokensEstimated: 0 };
+    }
+    const accessor = await getBrainAccessor(projectRoot);
+    // Group IDs by type prefix
+    const decisionIds = [];
+    const patternIds = [];
+    const learningIds = [];
+    const observationIds = [];
+    const unknownIds = [];
+    for (const id of ids) {
+        const type = parseIdPrefix(id);
+        switch (type) {
+            case 'decision':
+                decisionIds.push(id);
+                break;
+            case 'pattern':
+                patternIds.push(id);
+                break;
+            case 'learning':
+                learningIds.push(id);
+                break;
+            case 'observation':
+                observationIds.push(id);
+                break;
+            default:
+                unknownIds.push(id);
+        }
+    }
+    const results = [];
+    const notFound = [...unknownIds];
+    // Fetch decisions
+    for (const id of decisionIds) {
+        const row = await accessor.getDecision(id);
+        if (row) {
+            results.push({ id, type: 'decision', data: row });
+        }
+        else {
+            notFound.push(id);
+        }
+    }
+    // Fetch patterns
+    for (const id of patternIds) {
+        const row = await accessor.getPattern(id);
+        if (row) {
+            results.push({ id, type: 'pattern', data: row });
+        }
+        else {
+            notFound.push(id);
+        }
+    }
+    // Fetch learnings
+    for (const id of learningIds) {
+        const row = await accessor.getLearning(id);
+        if (row) {
+            results.push({ id, type: 'learning', data: row });
+        }
+        else {
+            notFound.push(id);
+        }
+    }
+    // Fetch observations
+    for (const id of observationIds) {
+        const row = await accessor.getObservation(id);
+        if (row) {
+            results.push({ id, type: 'observation', data: row });
+        }
+        else {
+            notFound.push(id);
+        }
+    }
+    return {
+        results,
+        notFound,
+        tokensEstimated: results.length * 500,
+    };
+}
+// ============================================================================
+// Observe (Unified Save)
+// ============================================================================
+/**
+ * Keyword patterns for auto-classifying observation type from text.
+ */
+const TYPE_KEYWORDS = [
+    { keywords: ['bug', 'fix', 'error', 'crash'], type: 'bugfix' },
+    { keywords: ['refactor', 'rename', 'extract', 'move'], type: 'refactor' },
+    { keywords: ['add', 'create', 'implement', 'new'], type: 'feature' },
+    { keywords: ['decide', 'chose', 'pick', 'instead'], type: 'decision' },
+    { keywords: ['update', 'change', 'modify', 'upgrade'], type: 'change' },
+];
+/**
+ * Auto-classify observation type from text using keyword matching.
+ */
+function classifyObservationType(text) {
+    const lower = text.toLowerCase();
+    for (const { keywords, type } of TYPE_KEYWORDS) {
+        for (const keyword of keywords) {
+            if (lower.includes(keyword)) {
+                return type;
+            }
+        }
+    }
+    return 'discovery';
+}
+/** Monotonic counter to prevent ID collisions within the same millisecond. */
+let observeSeq = 0;
+/**
+ * Save an observation to the BRAIN observations table.
+ * Replaces the external claude-mem save_observation pattern.
+ *
+ * Auto-classifies type from text if not provided. Generates a
+ * unique ID with O- prefix + base36 timestamp.
+ *
+ * @param projectRoot - Project root directory
+ * @param params - Observation data
+ * @returns Created observation ID, type, and timestamp
+ */
+export async function observeBrain(projectRoot, params) {
+    const { text, title: titleParam, type: typeParam, project, sourceSessionId, sourceType } = params;
+    if (!text || !text.trim()) {
+        throw new Error('Observation text is required');
+    }
+    const type = typeParam ?? classifyObservationType(text);
+    const title = titleParam ?? text.slice(0, 120);
+    const now = new Date().toISOString().replace('T', ' ').slice(0, 19);
+    // Content-hash dedup: SHA-256 prefix of title+text
+    const contentHash = createHash('sha256')
+        .update(title + text)
+        .digest('hex')
+        .slice(0, 16);
+    // Check for recent duplicate (same content within last 30 seconds)
+    const { getBrainNativeDb } = await import('../store/brain-sqlite.js');
+    const nativeDb = getBrainNativeDb();
+    if (nativeDb) {
+        const cutoff = new Date(Date.now() - 30000).toISOString().replace('T', ' ').slice(0, 19);
+        const existing = typedAll(nativeDb.prepare('SELECT id, type, created_at FROM brain_observations WHERE content_hash = ? AND created_at > ?'), contentHash, cutoff);
+        if (existing.length > 0) {
+            return {
+                id: existing[0].id,
+                type: existing[0].type,
+                createdAt: existing[0].created_at,
+            };
+        }
+    }
+    // Write-guard: validate cross-db session reference before inserting
+    let validSessionId = sourceSessionId ?? null;
+    if (validSessionId) {
+        try {
+            const tasksDb = await getDb(projectRoot);
+            if (!(await sessionExistsInTasksDb(validSessionId, tasksDb))) {
+                validSessionId = null;
+            }
+        }
+        catch {
+            // Best-effort: if tasks.db unavailable, null out the reference
+            validSessionId = null;
+        }
+    }
+    const id = `O-${Date.now().toString(36)}-${(observeSeq++ % 1000).toString(36)}`;
+    const accessor = await getBrainAccessor(projectRoot);
+    const row = await accessor.addObservation({
+        id,
+        type,
+        title,
+        narrative: text,
+        contentHash,
+        project: project ?? null,
+        sourceSessionId: validSessionId,
+        sourceType: sourceType ?? 'agent',
+        createdAt: now,
+    });
+    // Populate embedding if provider is available (T5387).
+    // Fire-and-forget: embedding runs in the background so it never blocks the CLI.
+    // The observation is already saved above — if embedding fails, the observation
+    // still exists, just without vector similarity search capability. (T027)
+    if (isEmbeddingAvailable()) {
+        setImmediate(() => {
+            embedText(text)
+                .then((vector) => {
+                if (vector && nativeDb) {
+                    nativeDb
+                        .prepare('INSERT OR REPLACE INTO brain_embeddings (id, embedding) VALUES (?, ?)')
+                        .run(id, Buffer.from(vector.buffer));
+                }
+            })
+                .catch(() => {
+                // Silently skip embedding failures — observation is already persisted
+            });
+        });
+    }
+    // Regenerate memory bridge for high-value observation types (T5240).
+    // Only learning and decision types trigger bridge refresh to avoid excessive writes.
+    if (type === 'decision') {
+        import('./memory-bridge.js')
+            .then(({ refreshMemoryBridge }) => refreshMemoryBridge(projectRoot))
+            .catch(() => {
+            /* Memory bridge refresh is best-effort */
+        });
+    }
+    // Auto-link observation to the currently focused task when a session is active. (T141)
+    // This is a fire-and-forget side effect — linking failure MUST NOT block the return.
+    if (validSessionId) {
+        autoLinkObservationToTask(projectRoot, row.id, accessor).catch(() => {
+            /* Auto-linking is best-effort */
+        });
+    }
+    return {
+        id: row.id,
+        type: row.type,
+        createdAt: row.createdAt,
+    };
+}
+/**
+ * Auto-link a newly created observation to the currently focused task.
+ *
+ * Queries the active session via sessionStatus() and reads taskWork.taskId.
+ * If a task is focused, inserts a brain_memory_links row linking the
+ * observation to that task with linkType 'produced_by'.
+ *
+ * All failures are silently swallowed — this is a best-effort side effect.
+ *
+ * @param projectRoot - Project root directory
+ * @param observationId - ID of the newly created observation
+ * @param accessor - BrainDataAccessor to use for the link insert
+ */
+async function autoLinkObservationToTask(projectRoot, observationId, accessor) {
+    const { sessionStatus } = await import('../sessions/index.js');
+    const session = await sessionStatus(projectRoot);
+    if (!session)
+        return;
+    const taskId = session.taskWork?.taskId;
+    if (!taskId)
+        return;
+    await accessor.addLink({
+        memoryType: 'observation',
+        memoryId: observationId,
+        taskId,
+        linkType: 'produced_by',
+    });
+}
+/**
+ * Backfill embeddings for existing observations that lack them.
+ *
+ * Iterates through observations not yet in brain_embeddings and
+ * generates vectors using the registered embedding provider.
+ * Processes in batches to avoid memory pressure.
+ *
+ * An optional {@link PopulateEmbeddingsOptions.onProgress} callback is called
+ * after each observation is attempted, enabling callers to report progress.
+ *
+ * @param projectRoot - Project root directory
+ * @param options - Optional batch size and progress callback
+ * @returns Count of processed, skipped, and errored observations
+ *
+ * @epic T134
+ * @task T142
+ */
+export async function populateEmbeddings(projectRoot, options) {
+    if (!isEmbeddingAvailable()) {
+        return { processed: 0, skipped: 0, errors: 0 };
+    }
+    const { getBrainDb, getBrainNativeDb } = await import('../store/brain-sqlite.js');
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb) {
+        return { processed: 0, skipped: 0, errors: 0 };
+    }
+    const batchSize = options?.batchSize ?? 50;
+    const { onProgress } = options ?? {};
+    let processed = 0;
+    let skipped = 0;
+    let errors = 0;
+    // Find observations without embeddings
+    const rows = typedAll(nativeDb.prepare(`
+    SELECT o.id, o.narrative, o.title
+    FROM brain_observations o
+    LEFT JOIN brain_embeddings e ON o.id = e.id
+    WHERE e.id IS NULL AND o.narrative IS NOT NULL
+    ORDER BY o.created_at DESC
+  `));
+    const total = rows.length;
+    let attempted = 0;
+    for (let i = 0; i < rows.length; i += batchSize) {
+        const batch = rows.slice(i, i + batchSize);
+        for (const row of batch) {
+            try {
+                const vector = await embedText(row.narrative || row.title);
+                if (vector) {
+                    nativeDb
+                        .prepare('INSERT OR REPLACE INTO brain_embeddings (id, embedding) VALUES (?, ?)')
+                        .run(row.id, Buffer.from(vector.buffer));
+                    processed++;
+                }
+                else {
+                    skipped++;
+                }
+            }
+            catch {
+                errors++;
+            }
+            attempted++;
+            onProgress?.(attempted, total);
+        }
+    }
+    return { processed, skipped, errors };
+}
+//# sourceMappingURL=brain-retrieval.js.map

package/dist/memory/brain-retrieval.js.map

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package/dist/memory/brain-row-types.js

@@ -0,0 +1,10 @@
+/**
+ * Typed row interfaces for raw SQLite queries against brain.db.
+ *
+ * These replace inline `as Array<{ ... }>` casts throughout the brain/memory modules,
+ * giving each raw-SQL result shape a named, reusable type.
+ *
+ * @task T5800
+ */
+export {};
+//# sourceMappingURL=brain-row-types.js.map

package/dist/memory/brain-row-types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"brain-row-types.js","sourceRoot":"","sources":["../../src/memory/brain-row-types.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG"}