@cleocode/core 2026.4.58 → 2026.4.59

package/dist/store/brain-schema.js

@@ -0,0 +1,628 @@
+/**
+ * Drizzle ORM schema for CLEO brain.db (SQLite via node:sqlite + sqlite-proxy).
+ *
+ * Tables: brain_decisions, brain_patterns, brain_learnings, brain_memory_links, brain_schema_meta
+ * Stores cognitive infrastructure: decisions, patterns, and learnings extracted
+ * from CLEO task execution. Cross-references tasks in tasks.db via soft FKs.
+ *
+ * @epic T5149
+ * @task T5127
+ */
+import { sql } from 'drizzle-orm';
+import { index, integer, primaryKey, real, sqliteTable, text } from 'drizzle-orm/sqlite-core';
+// === ENUM CONSTANTS ===
+/**
+ * Memory retention tiers for the tiered cognitive memory model (T549).
+ *
+ * - `short`  — Session-scoped working context. Volatile; auto-evicted after 48h if not promoted.
+ * - `medium` — Project-scoped verified facts. Retained for weeks; decays if unverified.
+ * - `long`   — Architectural bedrock. Permanent; supersession-only eviction.
+ *
+ * NULL semantics for legacy rows: treat NULL as 'medium' at query time.
+ * (Legacy rows survived the T523 purge, so medium is a safe tier assumption.)
+ */
+export const BRAIN_MEMORY_TIERS = ['short', 'medium', 'long'];
+/**
+ * Cognitive type taxonomy for the tiered memory model (T549).
+ *
+ * Uses `BRAIN_COGNITIVE_TYPES` (not `BRAIN_MEMORY_TYPES`) to avoid collision
+ * with the link table enum `BRAIN_MEMORY_TYPES` (which stores entity type names).
+ *
+ * - `semantic`   — Declarative facts: "what is true about this project"
+ *                  → brain_decisions (always), brain_learnings (default)
+ * - `episodic`   — Event records: "what happened and when"
+ *                  → brain_observations (always), brain_learnings (transcript-derived)
+ * - `procedural` — Process knowledge: "how to do things"
+ *                  → brain_patterns (always)
+ */
+export const BRAIN_COGNITIVE_TYPES = ['semantic', 'episodic', 'procedural'];
+/**
+ * Source reliability levels for the tiered memory model (T549).
+ *
+ * Separate dimension from content `quality_score` — captures source trustworthiness.
+ * Each level drives a quality multiplier applied at scoring time.
+ *
+ * | Level         | Meaning                                 | Quality multiplier |
+ * |---------------|-----------------------------------------|--------------------|
+ * | `owner`       | Owner explicitly stated this fact       | 1.0                |
+ * | `task-outcome`| Verified by completed task with result  | 0.90               |
+ * | `agent`       | Agent-inferred during work (default)    | 0.70               |
+ * | `speculative` | Agent hypothesis, not yet corroborated  | 0.40               |
+ */
+export const BRAIN_SOURCE_CONFIDENCE = ['owner', 'task-outcome', 'agent', 'speculative'];
+/** Decision types from ADR-009. */
+export const BRAIN_DECISION_TYPES = [
+    'architecture',
+    'technical',
+    'process',
+    'strategic',
+    'tactical',
+];
+/** Confidence levels for decisions. */
+export const BRAIN_CONFIDENCE_LEVELS = ['low', 'medium', 'high'];
+/** Outcome types for decision tracking. */
+export const BRAIN_OUTCOME_TYPES = ['success', 'failure', 'mixed', 'pending'];
+/** Pattern types for workflow analysis. */
+export const BRAIN_PATTERN_TYPES = [
+    'workflow',
+    'blocker',
+    'success',
+    'failure',
+    'optimization',
+];
+/** Impact levels for patterns. */
+export const BRAIN_IMPACT_LEVELS = ['low', 'medium', 'high'];
+/** Link types for cross-referencing BRAIN entries with tasks. */
+export const BRAIN_LINK_TYPES = [
+    'produced_by',
+    'applies_to',
+    'informed_by',
+    'contradicts',
+];
+/** Observation types for claude-mem compatible observations. */
+export const BRAIN_OBSERVATION_TYPES = [
+    'discovery',
+    'change',
+    'feature',
+    'bugfix',
+    'decision',
+    'refactor',
+];
+/** Source types for observations (how the observation was created). */
+export const BRAIN_OBSERVATION_SOURCE_TYPES = [
+    'agent',
+    'session-debrief',
+    'claude-mem',
+    'manual',
+];
+/** Memory entity types for the links table. */
+export const BRAIN_MEMORY_TYPES = ['decision', 'pattern', 'learning', 'observation'];
+/** Sticky note status values. */
+export const BRAIN_STICKY_STATUSES = ['active', 'converted', 'archived'];
+/** Sticky note colors. */
+export const BRAIN_STICKY_COLORS = ['yellow', 'blue', 'green', 'red', 'purple'];
+/** Sticky note priority levels. */
+export const BRAIN_STICKY_PRIORITIES = ['low', 'medium', 'high'];
+// === BRAIN_DECISIONS TABLE ===
+export const brainDecisions = sqliteTable('brain_decisions', {
+    id: text('id').primaryKey(),
+    type: text('type', { enum: BRAIN_DECISION_TYPES }).notNull(),
+    decision: text('decision').notNull(),
+    rationale: text('rationale').notNull(),
+    confidence: text('confidence', { enum: BRAIN_CONFIDENCE_LEVELS }).notNull(),
+    outcome: text('outcome', { enum: BRAIN_OUTCOME_TYPES }),
+    alternativesJson: text('alternatives_json'),
+    contextEpicId: text('context_epic_id'), // soft FK to tasks.id in tasks.db
+    contextTaskId: text('context_task_id'), // soft FK to tasks.id in tasks.db
+    contextPhase: text('context_phase'),
+    /**
+     * Quality score: 0.0 (noise) – 1.0 (canonical). Null for legacy entries.
+     * Computed at insert time from confidence, content richness, and context.
+     * Entries below 0.3 are excluded from search results (T531).
+     */
+    qualityScore: real('quality_score'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+    // T549: Tiered + Typed Memory columns
+    /** Memory retention tier. NULL on legacy rows → treat as 'medium' at query time. */
+    memoryTier: text('memory_tier', { enum: BRAIN_MEMORY_TIERS }).default('short'),
+    /** Cognitive type. Decisions are always 'semantic' (declarative architectural facts). */
+    memoryType: text('memory_type', { enum: BRAIN_COGNITIVE_TYPES }).default('semantic'),
+    /**
+     * Ground-truth verification flag.
+     * false = agent-inferred, pending verification.
+     * true = confirmed via owner statement, task outcome, corroboration, or manual `cleo memory verify`.
+     */
+    verified: integer('verified', { mode: 'boolean' }).notNull().default(false),
+    /**
+     * Bitemporal: when this decision became valid (ISO 8601 text).
+     * Defaults to creation time. Can be backdated for historical facts.
+     */
+    validAt: text('valid_at').notNull().default(sql `(datetime('now'))`),
+    /**
+     * Bitemporal: when this decision stopped being valid.
+     * NULL = currently valid. Prefer `supersedes` graph edges for decision supersession
+     * (ADR-009); this column is a convenience gate for bulk eviction queries.
+     */
+    invalidAt: text('invalid_at'),
+    /**
+     * Source reliability level — separate from content quality_score (T549 §3.1.5).
+     * Drives quality multiplier at scoring time.
+     */
+    sourceConfidence: text('source_confidence', { enum: BRAIN_SOURCE_CONFIDENCE }).default('agent'),
+    /**
+     * Number of times this decision has been cited/retrieved (T549 CONFLICT-03).
+     * Used by the consolidator for citation-based medium→long promotion.
+     */
+    citationCount: integer('citation_count').notNull().default(0),
+}, (table) => [
+    index('idx_brain_decisions_type').on(table.type),
+    index('idx_brain_decisions_confidence').on(table.confidence),
+    index('idx_brain_decisions_outcome').on(table.outcome),
+    index('idx_brain_decisions_context_epic').on(table.contextEpicId),
+    index('idx_brain_decisions_context_task').on(table.contextTaskId),
+    index('idx_brain_decisions_quality').on(table.qualityScore),
+    // T549 indexes
+    index('idx_brain_decisions_tier').on(table.memoryTier),
+    index('idx_brain_decisions_mem_type').on(table.memoryType),
+    index('idx_brain_decisions_verified').on(table.verified),
+    index('idx_brain_decisions_valid_at').on(table.validAt),
+    index('idx_brain_decisions_source_conf').on(table.sourceConfidence),
+]);
+// === BRAIN_PATTERNS TABLE ===
+export const brainPatterns = sqliteTable('brain_patterns', {
+    id: text('id').primaryKey(),
+    type: text('type', { enum: BRAIN_PATTERN_TYPES }).notNull(),
+    pattern: text('pattern').notNull(),
+    context: text('context').notNull(),
+    frequency: integer('frequency').notNull().default(1),
+    successRate: real('success_rate'),
+    impact: text('impact', { enum: BRAIN_IMPACT_LEVELS }),
+    antiPattern: text('anti_pattern'),
+    mitigation: text('mitigation'),
+    examplesJson: text('examples_json').default('[]'),
+    extractedAt: text('extracted_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+    /**
+     * Quality score: 0.0 (noise) – 1.0 (canonical). Null for legacy entries.
+     * Computed at insert time from type, content richness, and examples.
+     * Entries below 0.3 are excluded from search results (T531).
+     */
+    qualityScore: real('quality_score'),
+    // T549: Tiered + Typed Memory columns
+    /** Memory retention tier. NULL on legacy rows → treat as 'medium' at query time. */
+    memoryTier: text('memory_tier', { enum: BRAIN_MEMORY_TIERS }).default('short'),
+    /** Cognitive type. Patterns are always 'procedural' (process/workflow knowledge). */
+    memoryType: text('memory_type', { enum: BRAIN_COGNITIVE_TYPES }).default('procedural'),
+    /**
+     * Ground-truth verification flag.
+     * For patterns, this is complementary to frequency+successRate verification.
+     * false = agent-inferred. true = confirmed via owner statement or task outcome.
+     */
+    verified: integer('verified', { mode: 'boolean' }).notNull().default(false),
+    /**
+     * Bitemporal: when this pattern became valid (ISO 8601 text).
+     * Defaults to extraction time.
+     */
+    validAt: text('valid_at').notNull().default(sql `(datetime('now'))`),
+    /**
+     * Bitemporal: when this pattern stopped being valid.
+     * NULL = currently valid. Set by consolidator when frequency+successRate drops below threshold.
+     */
+    invalidAt: text('invalid_at'),
+    /**
+     * Source reliability level — separate from content quality_score (T549 §3.1.5).
+     * Drives quality multiplier at scoring time.
+     */
+    sourceConfidence: text('source_confidence', { enum: BRAIN_SOURCE_CONFIDENCE }).default('agent'),
+    /**
+     * Number of times this pattern has been cited/retrieved (T549 CONFLICT-03).
+     * Used by the consolidator for citation-based medium→long promotion.
+     */
+    citationCount: integer('citation_count').notNull().default(0),
+}, (table) => [
+    index('idx_brain_patterns_type').on(table.type),
+    index('idx_brain_patterns_impact').on(table.impact),
+    index('idx_brain_patterns_frequency').on(table.frequency),
+    index('idx_brain_patterns_quality').on(table.qualityScore),
+    // T549 indexes
+    index('idx_brain_patterns_tier').on(table.memoryTier),
+    index('idx_brain_patterns_mem_type').on(table.memoryType),
+    index('idx_brain_patterns_verified').on(table.verified),
+    index('idx_brain_patterns_valid_at').on(table.validAt),
+    index('idx_brain_patterns_source_conf').on(table.sourceConfidence),
+]);
+// === BRAIN_LEARNINGS TABLE ===
+export const brainLearnings = sqliteTable('brain_learnings', {
+    id: text('id').primaryKey(),
+    insight: text('insight').notNull(),
+    source: text('source').notNull(),
+    confidence: real('confidence').notNull(), // 0.0-1.0
+    actionable: integer('actionable', { mode: 'boolean' }).notNull().default(false),
+    application: text('application'),
+    applicableTypesJson: text('applicable_types_json'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+    /**
+     * Quality score: 0.0 (noise) – 1.0 (canonical). Null for legacy entries.
+     * Computed at insert time from confidence, actionability, and content richness.
+     * Entries below 0.3 are excluded from search results (T531).
+     */
+    qualityScore: real('quality_score'),
+    // T549: Tiered + Typed Memory columns
+    /** Memory retention tier. NULL on legacy rows → treat as 'medium' at query time. */
+    memoryTier: text('memory_tier', { enum: BRAIN_MEMORY_TIERS }).default('short'),
+    /**
+     * Cognitive type. Learnings are 'semantic' by default (declarative facts).
+     * Transcript-derived learnings with source containing 'transcript:ses_' are 'episodic'.
+     */
+    memoryType: text('memory_type', { enum: BRAIN_COGNITIVE_TYPES }).default('semantic'),
+    /**
+     * Ground-truth verification flag.
+     * false = agent-inferred, pending verification.
+     * true = confirmed via owner statement, task outcome, corroboration, or manual verify.
+     */
+    verified: integer('verified', { mode: 'boolean' }).notNull().default(false),
+    /**
+     * Bitemporal: when this learning became valid (ISO 8601 text).
+     * Defaults to creation time. Facts can change — use invalidAt to retire stale ones.
+     */
+    validAt: text('valid_at').notNull().default(sql `(datetime('now'))`),
+    /**
+     * Bitemporal: when this learning stopped being valid.
+     * NULL = currently valid. Set by consolidator on contradiction detection or TTL decay.
+     */
+    invalidAt: text('invalid_at'),
+    /**
+     * Source reliability level — separate from content quality_score (T549 §3.1.5).
+     * Drives quality multiplier at scoring time.
+     */
+    sourceConfidence: text('source_confidence', { enum: BRAIN_SOURCE_CONFIDENCE }).default('agent'),
+    /**
+     * Number of times this learning has been cited/retrieved (T549 CONFLICT-03).
+     * Used by the consolidator for citation-based medium→long promotion.
+     */
+    citationCount: integer('citation_count').notNull().default(0),
+}, (table) => [
+    index('idx_brain_learnings_confidence').on(table.confidence),
+    index('idx_brain_learnings_actionable').on(table.actionable),
+    index('idx_brain_learnings_quality').on(table.qualityScore),
+    // T549 indexes
+    index('idx_brain_learnings_tier').on(table.memoryTier),
+    index('idx_brain_learnings_mem_type').on(table.memoryType),
+    index('idx_brain_learnings_verified').on(table.verified),
+    index('idx_brain_learnings_valid_at').on(table.validAt),
+    index('idx_brain_learnings_invalid').on(table.invalidAt),
+    index('idx_brain_learnings_source_conf').on(table.sourceConfidence),
+]);
+// === BRAIN_OBSERVATIONS TABLE ===
+/** General-purpose observations — replaces claude-mem's observations table. */
+export const brainObservations = sqliteTable('brain_observations', {
+    id: text('id').primaryKey(),
+    type: text('type', { enum: BRAIN_OBSERVATION_TYPES }).notNull(),
+    title: text('title').notNull(),
+    subtitle: text('subtitle'),
+    narrative: text('narrative'),
+    factsJson: text('facts_json'), // JSON array of fact strings
+    conceptsJson: text('concepts_json'), // JSON array of concept strings
+    project: text('project'),
+    filesReadJson: text('files_read_json'), // JSON array of file paths
+    filesModifiedJson: text('files_modified_json'), // JSON array of file paths
+    sourceSessionId: text('source_session_id'), // soft FK to sessions
+    sourceType: text('source_type', { enum: BRAIN_OBSERVATION_SOURCE_TYPES })
+        .notNull()
+        .default('agent'),
+    /** T383/T417: agent provenance — identifies the spawned agent that produced this observation. Null for legacy entries. */
+    agent: text('agent'), // nullable — null for legacy observations
+    contentHash: text('content_hash'), // SHA-256 prefix for dedup
+    discoveryTokens: integer('discovery_tokens'), // cost to produce this observation
+    /**
+     * Quality score: 0.0 (noise) – 1.0 (canonical). Null for legacy entries.
+     * Computed at insert time from content richness and title length.
+     * Entries below 0.3 are excluded from search results (T531).
+     */
+    qualityScore: real('quality_score'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+    // T549: Tiered + Typed Memory columns
+    /** Memory retention tier. NULL on legacy rows → treat as 'medium' at query time. */
+    memoryTier: text('memory_tier', { enum: BRAIN_MEMORY_TIERS }).default('short'),
+    /** Cognitive type. Observations are always 'episodic' (time-anchored event records). */
+    memoryType: text('memory_type', { enum: BRAIN_COGNITIVE_TYPES }).default('episodic'),
+    /**
+     * Ground-truth verification flag.
+     * false = agent-inferred, pending verification.
+     * true = confirmed via owner statement, task outcome, corroboration, or manual verify.
+     */
+    verified: integer('verified', { mode: 'boolean' }).notNull().default(false),
+    /**
+     * Bitemporal: when this observation became valid (ISO 8601 text).
+     * Defaults to creation time. Can be backdated for historical facts.
+     */
+    validAt: text('valid_at').notNull().default(sql `(datetime('now'))`),
+    /**
+     * Bitemporal: when this observation stopped being valid.
+     * NULL = currently valid. Set by consolidator on contradiction detection.
+     * Temporal query pattern: WHERE valid_at <= :t AND (invalid_at IS NULL OR invalid_at > :t)
+     */
+    invalidAt: text('invalid_at'),
+    /**
+     * Source reliability level — separate from content quality_score (T549 §3.1.5).
+     * Drives quality multiplier at scoring time.
+     */
+    sourceConfidence: text('source_confidence', { enum: BRAIN_SOURCE_CONFIDENCE }).default('agent'),
+    /**
+     * Number of times this observation has been cited/retrieved (T549 CONFLICT-03).
+     * Used by the consolidator for citation-based medium→long promotion.
+     */
+    citationCount: integer('citation_count').notNull().default(0),
+}, (table) => [
+    index('idx_brain_observations_type').on(table.type),
+    index('idx_brain_observations_project').on(table.project),
+    index('idx_brain_observations_created_at').on(table.createdAt),
+    index('idx_brain_observations_source_type').on(table.sourceType),
+    index('idx_brain_observations_source_session').on(table.sourceSessionId),
+    // T033: composite replaces single-col content_hash; see brain migration
+    index('idx_brain_observations_content_hash_created_at').on(table.contentHash, table.createdAt),
+    // T033: type + project compound filter optimization
+    index('idx_brain_observations_type_project').on(table.type, table.project),
+    // T417: agent provenance index for memory.find --agent filter
+    index('idx_brain_observations_agent').on(table.agent),
+    // T531: quality score filter index
+    index('idx_brain_observations_quality').on(table.qualityScore),
+    // T549 indexes
+    index('idx_brain_observations_tier').on(table.memoryTier),
+    index('idx_brain_observations_mem_type').on(table.memoryType),
+    index('idx_brain_observations_verified').on(table.verified),
+    index('idx_brain_observations_valid_at').on(table.validAt),
+    index('idx_brain_observations_invalid').on(table.invalidAt),
+    index('idx_brain_observations_source_conf').on(table.sourceConfidence),
+]);
+// === BRAIN_STICKY_NOTES TABLE ===
+/** Ephemeral sticky notes for quick capture before formal classification. */
+export const brainStickyNotes = sqliteTable('brain_sticky_notes', {
+    id: text('id').primaryKey(),
+    content: text('content').notNull(),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+    tagsJson: text('tags_json'),
+    status: text('status', { enum: BRAIN_STICKY_STATUSES }).notNull().default('active'),
+    convertedToJson: text('converted_to_json'),
+    color: text('color', { enum: BRAIN_STICKY_COLORS }),
+    priority: text('priority', { enum: BRAIN_STICKY_PRIORITIES }),
+    sourceType: text('source_type').default('sticky-note'),
+}, (table) => [
+    index('idx_brain_sticky_status').on(table.status),
+    index('idx_brain_sticky_created').on(table.createdAt),
+    index('idx_brain_sticky_tags').on(table.tagsJson),
+]);
+// === BRAIN_MEMORY_LINKS TABLE ===
+/** Cross-references between BRAIN entries and tasks in tasks.db. */
+export const brainMemoryLinks = sqliteTable('brain_memory_links', {
+    memoryType: text('memory_type', { enum: BRAIN_MEMORY_TYPES }).notNull(),
+    memoryId: text('memory_id').notNull(),
+    taskId: text('task_id').notNull(), // soft FK to tasks.id in tasks.db
+    linkType: text('link_type', { enum: BRAIN_LINK_TYPES }).notNull(),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+}, (table) => [
+    primaryKey({ columns: [table.memoryType, table.memoryId, table.taskId, table.linkType] }),
+    index('idx_brain_links_task').on(table.taskId),
+    index('idx_brain_links_memory').on(table.memoryType, table.memoryId),
+]);
+// === SCHEMA METADATA ===
+export const brainSchemaMeta = sqliteTable('brain_schema_meta', {
+    key: text('key').primaryKey(),
+    value: text('value').notNull(),
+});
+// === PAGEINDEX GRAPH TABLES (T5160, expanded T528) ===
+/**
+ * Node types for the graph-native memory model.
+ * Mirrors typed tables (decision, pattern, learning, observation, sticky),
+ * adds task provenance (task, session, epic), codebase bridging (file, symbol),
+ * and abstract/synthesized types (concept, summary).
+ */
+export const BRAIN_NODE_TYPES = [
+    // Memory entity types (mirror typed tables)
+    'decision',
+    'pattern',
+    'learning',
+    'observation',
+    'sticky',
+    // Task provenance (soft FK into tasks.db)
+    'task',
+    'session',
+    'epic',
+    // Codebase integration (bridge to nexus.db code_index)
+    'file',
+    'symbol',
+    // Abstract / synthesized
+    'concept',
+    'summary',
+];
+/**
+ * Edge types for the graph-native memory model.
+ * Covers provenance/derivation, semantic relationships, structural links,
+ * graph bridging between memory entities and codebase nodes, and plastic
+ * Hebbian/STDP edges.
+ */
+export const BRAIN_EDGE_TYPES = [
+    // Provenance / derivation
+    'derived_from', // learning ← derived_from ← observation
+    'produced_by', // observation ← produced_by ← session
+    'informed_by', // decision ← informed_by ← pattern
+    // Semantic relationship
+    'supports', // observation → supports → decision
+    'contradicts', // observation → contradicts → decision
+    'supersedes', // decision → supersedes → decision (older)
+    'applies_to', // decision/pattern → applies_to → task/file/symbol
+    // Structural
+    'documents', // observation → documents → symbol/file
+    'summarizes', // summary → summarizes → observation (consolidation)
+    'part_of', // task → part_of → epic
+    // Graph bridging (memory ↔ code)
+    'references', // observation → references → symbol
+    'modified_by', // file → modified_by → session
+    'code_reference', // memory node → code_reference → nexus symbol/file (T645)
+    'affects', // observation → affects → symbol/file (impact tracking)
+    'mentions', // observation → mentions → symbol name (weak reference)
+    // Plasticity (Hebbian + STDP co-retrieval)
+    'co_retrieved', // A → co_retrieved → B (Hebbian: frequently retrieved together)
+];
+/**
+ * Graph nodes table — the traversable knowledge graph layer.
+ *
+ * Every entity row in a typed table (decisions, patterns, learnings,
+ * observations) gets a corresponding node here. The typed table row is
+ * the source of truth; the graph node is the index entry for traversal
+ * and cross-entity reasoning.
+ *
+ * Node ID convention: '<type>:<source-id>'
+ * Examples: 'decision:D-abc123', 'observation:O-mntphoj6-0',
+ *           'task:T523', 'symbol:src/store/brain-schema.ts::brainPageNodes'
+ */
+export const brainPageNodes = sqliteTable('brain_page_nodes', {
+    /** Stable composite ID: '<type>:<source-id>' */
+    id: text('id').primaryKey(),
+    /** Discriminated type from BRAIN_NODE_TYPES. */
+    nodeType: text('node_type', { enum: BRAIN_NODE_TYPES }).notNull(),
+    /** Human-readable label (title, name, or generated summary). */
+    label: text('label').notNull(),
+    /**
+     * Quality score: 0.0 (noise) – 1.0 (canonical).
+     * Derived from: source confidence, edge density, age decay, agent provenance.
+     * Default 0.5 for unknown provenance; 0.0 triggers exclusion from traversal.
+     */
+    qualityScore: real('quality_score').notNull().default(0.5),
+    /**
+     * SHA-256 prefix (first 16 hex chars) of the canonical content.
+     * Computed at insert time; duplicate hashes are rejected.
+     * Null for external references (task, session, symbol nodes).
+     */
+    contentHash: text('content_hash'),
+    /**
+     * ISO 8601 timestamp of last activity on this node.
+     * Updated when new edges are added, quality changes, or content is revised.
+     */
+    lastActivityAt: text('last_activity_at').notNull().default(sql `(datetime('now'))`),
+    /**
+     * Extensible JSON metadata blob — type-specific payload.
+     * decision: { type, confidence, outcome }
+     * observation: { sourceType, agent, sessionId }
+     * symbol: { filePath, kind, startLine, endLine, language }
+     * task: { status, priority, epicId }
+     */
+    metadataJson: text('metadata_json'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+}, (table) => [
+    index('idx_brain_nodes_type').on(table.nodeType),
+    index('idx_brain_nodes_quality').on(table.qualityScore),
+    index('idx_brain_nodes_content_hash').on(table.contentHash),
+    index('idx_brain_nodes_last_activity').on(table.lastActivityAt),
+]);
+/**
+ * Graph edges table — directed, typed, weighted, provenance-aware links
+ * between brain_page_nodes entries (or external nexus node IDs).
+ *
+ * The composite primary key (fromId, toId, edgeType) prevents duplicate
+ * edges of the same type between the same pair of nodes.
+ */
+export const brainPageEdges = sqliteTable('brain_page_edges', {
+    fromId: text('from_id').notNull(), // brain_page_nodes.id
+    toId: text('to_id').notNull(), // brain_page_nodes.id or nexus node id
+    edgeType: text('edge_type', { enum: BRAIN_EDGE_TYPES }).notNull(),
+    /**
+     * Edge weight / confidence: 0.0 – 1.0.
+     * Semantic edges use extractor confidence (similarity score).
+     * Structural edges use 1.0 (deterministic).
+     * Contradiction edges store the overlap score that triggered detection.
+     */
+    weight: real('weight').notNull().default(1.0),
+    /**
+     * Human-readable note on why this edge was emitted.
+     * Examples: 'auto:task-complete' | 'auto:session-end' |
+     *           'auto:contradiction-detected' | 'auto:consolidation' | 'manual'
+     */
+    provenance: text('provenance'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+}, (table) => [
+    primaryKey({ columns: [table.fromId, table.toId, table.edgeType] }),
+    index('idx_brain_edges_from').on(table.fromId),
+    index('idx_brain_edges_to').on(table.toId),
+    index('idx_brain_edges_type').on(table.edgeType),
+]);
+// ============================================================================
+// RETRIEVAL LOG — tracks which entries are retrieved together (T549 §6)
+// ============================================================================
+/**
+ * Retrieval log tracks which brain entries are returned together in search
+ * results. This data drives:
+ *   - Co-retrieval edge strengthening (consolidation step 6)
+ *   - Memory quality instrumentation (retrieval frequency tracking)
+ *   - Citation count validation (corroboration for tier promotion)
+ *
+ * Each row records one retrieval event: the query, which entries were returned,
+ * and the retrieval source (find/fetch/hybrid).
+ */
+export const brainRetrievalLog = sqliteTable('brain_retrieval_log', {
+    id: integer('id').primaryKey({ autoIncrement: true }),
+    /** The search query or fetch IDs that triggered this retrieval. */
+    query: text('query').notNull(),
+    /** Comma-separated list of entry IDs returned in this retrieval. */
+    entryIds: text('entry_ids').notNull(),
+    /** Number of entries returned. */
+    entryCount: integer('entry_count').notNull(),
+    /** Retrieval source: 'find' | 'fetch' | 'hybrid' | 'timeline' | 'budget' */
+    source: text('source').notNull(),
+    /** Estimated tokens consumed by this retrieval. */
+    tokensUsed: integer('tokens_used'),
+    /** Session ID (soft FK to tasks.db sessions). Enables grouping retrievals by session for STDP analysis. */
+    sessionId: text('session_id'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+}, (table) => [
+    index('idx_retrieval_log_created').on(table.createdAt),
+    index('idx_retrieval_log_source').on(table.source),
+    index('idx_retrieval_log_session').on(table.sessionId),
+]);
+// ============================================================================
+// PLASTICITY EVENTS — STDP weight-change audit log (T626 phase 5)
+// ============================================================================
+/**
+ * Records every STDP weight-change event applied to a brain_page_edges row.
+ *
+ * Each row captures the causal pair (source_node, target_node), the signed
+ * delta applied to the edge weight, whether it was a potentiation or
+ * depression event, and which session and timestamp triggered it.
+ *
+ * @task T626
+ * @epic T626
+ */
+export const brainPlasticityEvents = sqliteTable('brain_plasticity_events', {
+    id: integer('id').primaryKey({ autoIncrement: true }),
+    /** from_id of the affected brain_page_edges row. */
+    sourceNode: text('source_node').notNull(),
+    /** to_id of the affected brain_page_edges row. */
+    targetNode: text('target_node').notNull(),
+    /**
+     * Signed weight delta applied to the edge.
+     * Positive = potentiation (LTP), negative = depression (LTD).
+     */
+    deltaW: real('delta_w').notNull(),
+    /**
+     * STDP event kind: `ltp` (Long-Term Potentiation) or `ltd` (Long-Term
+     * Depression).
+     */
+    kind: text('kind', { enum: ['ltp', 'ltd'] }).notNull(),
+    /** ISO 8601 timestamp when this event was applied. */
+    timestamp: text('timestamp').notNull().default(sql `(datetime('now'))`),
+    /** Session ID that triggered the STDP pass, if available. */
+    sessionId: text('session_id'),
+}, (table) => [
+    index('idx_plasticity_source').on(table.sourceNode),
+    index('idx_plasticity_target').on(table.targetNode),
+    index('idx_plasticity_timestamp').on(table.timestamp),
+    index('idx_plasticity_session').on(table.sessionId),
+    index('idx_plasticity_kind').on(table.kind),
+]);
+// BrainNodeType and BrainEdgeType are declared alongside their enum arrays above.
+//# sourceMappingURL=brain-schema.js.map

package/dist/store/brain-schema.js.map

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