@cleocode/core 2026.4.53 → 2026.4.55

package/dist/index.js

@@ -11406,6 +11406,54 @@ function insertJournalEntry(nativeDb, hash2, createdAt, name2) {
     `INSERT OR IGNORE INTO "__drizzle_migrations" ("hash", "created_at", "name") VALUES ('${hash2}', ${createdAt}, '${name2}')`
   );
 }
+function probeAndMarkApplied(nativeDb, migration, logSubsystem) {
+  const sqlStatements = Array.isArray(migration.sql) ? migration.sql : [migration.sql ?? ""];
+  const fullSql = sqlStatements.join("\n");
+  const alterColumnRegex = /ALTER\s+TABLE\s+[`"]?(\w+)[`"]?\s+ADD\s+COLUMN\s+[`"]?(\w+)[`"]?/gi;
+  const createTableRegex = /CREATE\s+TABLE\s+(?:IF\s+NOT\s+EXISTS\s+)?[`"]?(\w+)[`"]?/gi;
+  const createIndexRegex = /CREATE\s+(?:UNIQUE\s+)?INDEX\s+(?:IF\s+NOT\s+EXISTS\s+)?[`"]?(\w+)[`"]?/gi;
+  const alterTargets = [];
+  for (const m of fullSql.matchAll(alterColumnRegex)) {
+    alterTargets.push({ table: m[1], column: m[2] });
+  }
+  const tableTargets = [];
+  for (const m of fullSql.matchAll(createTableRegex)) {
+    tableTargets.push(m[1]);
+  }
+  const indexTargets = [];
+  for (const m of fullSql.matchAll(createIndexRegex)) {
+    indexTargets.push(m[1]);
+  }
+  const totalTargets = alterTargets.length + tableTargets.length + indexTargets.length;
+  if (totalTargets === 0) {
+    return false;
+  }
+  const allAltersPresent = alterTargets.every(({ table, column }) => {
+    if (!tableExists(nativeDb, table)) return false;
+    const cols = nativeDb.prepare(`PRAGMA table_info(${table})`).all();
+    return cols.some((c) => c.name === column);
+  });
+  const allTablesPresent = tableTargets.every((t) => tableExists(nativeDb, t));
+  const allIndexesPresent = indexTargets.every((idx) => {
+    const rows = nativeDb.prepare(`SELECT name FROM sqlite_master WHERE type='index' AND name=?`).all(idx);
+    return rows.length > 0;
+  });
+  if (allAltersPresent && allTablesPresent && allIndexesPresent) {
+    insertJournalEntry(nativeDb, migration.hash, migration.folderMillis, migration.name ?? "");
+    const log11 = getLogger(logSubsystem);
+    log11.debug(
+      {
+        migration: migration.name,
+        alters: alterTargets.length,
+        tables: tableTargets.length,
+        indexes: indexTargets.length
+      },
+      `Migration ${migration.name} DDL already present in schema \u2014 marked applied.`
+    );
+    return true;
+  }
+  return false;
+}
 function reconcileJournal(nativeDb, migrationsFolder, existenceTable, logSubsystem) {
   if (tableExists(nativeDb, existenceTable) && !tableExists(nativeDb, "__drizzle_migrations")) {
     const migrations = readMigrationFiles({ migrationsFolder });
@@ -11442,11 +11490,11 @@ function reconcileJournal(nativeDb, migrationsFolder, existenceTable, logSubsyst
         const log11 = getLogger(logSubsystem);
         log11.warn(
           { orphaned: orphanedEntries.length },
-          `Detected stale migration journal entries from a previous CLEO version. Reconciling.`
+          `Detected stale migration journal entries from a previous CLEO version. Reconciling via DDL probe.`
         );
         nativeDb.exec('DELETE FROM "__drizzle_migrations"');
         for (const m of localMigrations) {
-          insertJournalEntry(nativeDb, m.hash, m.folderMillis, m.name ?? "");
+          probeAndMarkApplied(nativeDb, m, logSubsystem);
         }
       }
     }
@@ -14428,7 +14476,6 @@ function runBrainMigrations(nativeDb, db) {
       "brain"
     );
   }
-  ensureColumns(nativeDb, "brain_observations", [{ name: "agent", ddl: "text" }], "brain");
   if (tableExists(nativeDb, "brain_page_edges")) {
     nativeDb.prepare(
       `UPDATE brain_page_edges