@cleocode/core 2026.4.51 → 2026.4.53

package/dist/internal.js

@@ -9598,11 +9598,14 @@ var init_brain_schema = __esm({
         source: text("source").notNull(),
         /** Estimated tokens consumed by this retrieval. */
         tokensUsed: integer("tokens_used"),
+        /** Session ID (soft FK to tasks.db sessions). Enables grouping retrievals by session for STDP analysis. */
+        sessionId: text("session_id"),
         createdAt: text("created_at").notNull().default(sql2`(datetime('now'))`)
       },
       (table) => [
         index("idx_retrieval_log_created").on(table.createdAt),
-        index("idx_retrieval_log_source").on(table.source)
+        index("idx_retrieval_log_source").on(table.source),
+        index("idx_retrieval_log_session").on(table.sessionId)
       ]
     );
     brainPlasticityEvents = sqliteTable(
@@ -11137,44 +11140,6 @@ var init_platform_paths = __esm({
 });
 
 // packages/core/src/paths.ts
-var paths_exports = {};
-__export(paths_exports, {
-  getAgentOutputsAbsolute: () => getAgentOutputsAbsolute,
-  getAgentOutputsDir: () => getAgentOutputsDir,
-  getAgentsHome: () => getAgentsHome,
-  getArchivePath: () => getArchivePath,
-  getBackupDir: () => getBackupDir,
-  getClaudeAgentsDir: () => getClaudeAgentsDir,
-  getClaudeMemDbPath: () => getClaudeMemDbPath,
-  getCleoCacheDir: () => getCleoCacheDir,
-  getCleoCantWorkflowsDir: () => getCleoCantWorkflowsDir,
-  getCleoConfigDir: () => getCleoConfigDir,
-  getCleoDir: () => getCleoDir,
-  getCleoDirAbsolute: () => getCleoDirAbsolute,
-  getCleoDocsDir: () => getCleoDocsDir,
-  getCleoGlobalAgentsDir: () => getCleoGlobalAgentsDir,
-  getCleoGlobalJustfilePath: () => getCleoGlobalJustfilePath,
-  getCleoGlobalRecipesDir: () => getCleoGlobalRecipesDir,
-  getCleoHome: () => getCleoHome,
-  getCleoLogDir: () => getCleoLogDir,
-  getCleoPiExtensionsDir: () => getCleoPiExtensionsDir,
-  getCleoSchemasDir: () => getCleoSchemasDir,
-  getCleoTempDir: () => getCleoTempDir,
-  getCleoTemplatesDir: () => getCleoTemplatesDir,
-  getCleoTemplatesTildePath: () => getCleoTemplatesTildePath,
-  getConfigPath: () => getConfigPath,
-  getGlobalConfigPath: () => getGlobalConfigPath,
-  getLogPath: () => getLogPath,
-  getManifestArchivePath: () => getManifestArchivePath,
-  getManifestPath: () => getManifestPath,
-  getProjectRoot: () => getProjectRoot,
-  getSessionsPath: () => getSessionsPath,
-  getTaskPath: () => getTaskPath,
-  isAbsolutePath: () => isAbsolutePath,
-  isProjectInitialized: () => isProjectInitialized,
-  resolveProjectPath: () => resolveProjectPath,
-  worktreeScope: () => worktreeScope
-});
 import { AsyncLocalStorage } from "node:async_hooks";
 import { existsSync as existsSync3, readFileSync as readFileSync2 } from "node:fs";
 import { homedir } from "node:os";
@@ -11193,9 +11158,6 @@ function getCleoTemplatesDir() {
 function getCleoSchemasDir() {
   return join4(getCleoHome(), "schemas");
 }
-function getCleoDocsDir() {
-  return join4(getCleoHome(), "docs");
-}
 function getCleoDir(cwd) {
   if (cwd) {
     return getCleoDirAbsolute(cwd);
@@ -11267,15 +11229,6 @@ function getTaskPath(cwd) {
 function getConfigPath(cwd) {
   return join4(getCleoDirAbsolute(cwd), "config.json");
 }
-function getSessionsPath(cwd) {
-  return join4(getCleoDirAbsolute(cwd), "sessions.json");
-}
-function getArchivePath(cwd) {
-  return join4(getCleoDirAbsolute(cwd), "tasks-archive.json");
-}
-function getLogPath(cwd) {
-  return join4(getCleoDirAbsolute(cwd), "logs", "cleo.log");
-}
 function getBackupDir(cwd) {
   return join4(getCleoDirAbsolute(cwd), "backups", "operational");
 }
@@ -14328,8 +14281,8 @@ async function cleanupMigrationArtifacts(backupPath) {
 }
 async function validateSqliteDatabase(dbPath) {
   try {
-    const { createRequire: createRequire15 } = await import("node:module");
-    const _req = createRequire15(import.meta.url);
+    const { createRequire: createRequire16 } = await import("node:module");
+    const _req = createRequire16(import.meta.url);
     const { DatabaseSync: DatabaseSync10 } = _req("node:sqlite");
     const db = new DatabaseSync10(dbPath, { readOnly: true });
     const integrityRow = db.prepare("PRAGMA integrity_check").get();
@@ -14950,7 +14903,7 @@ function clearEmbeddingProvider() {
   currentProvider = null;
 }
 async function embedText(text3) {
-  if (!currentProvider || !currentProvider.isAvailable()) return null;
+  if (!currentProvider?.isAvailable()) return null;
   return currentProvider.embed(text3);
 }
 function isEmbeddingAvailable() {
@@ -20100,7 +20053,7 @@ function parseIdPrefix(id) {
   return null;
 }
 async function searchSimilar(query, projectRoot, limit) {
-  if (!query || !query.trim()) return [];
+  if (!query?.trim()) return [];
   if (!isEmbeddingAvailable()) return [];
   const maxResults = limit ?? 10;
   const queryVector = await embedText(query);
@@ -47647,7 +47600,7 @@ async function computeLastSession(projectRoot, scopeFilter) {
     const accessor = await getAccessor(projectRoot);
     const allSessions = await accessor.loadSessions();
     const session = allSessions.find((s3) => s3.id === sessionId);
-    if (!session || !session.endedAt) return null;
+    if (!session?.endedAt) return null;
     let duration3 = 0;
     if (session.startedAt) {
       duration3 = Math.round(
@@ -48834,10 +48787,17 @@ async function searchBrainCompact(projectRoot, params) {
       setImmediate(() => {
         incrementCitationCounts(projectRoot, returnedIds).catch(() => {
         });
-        logRetrieval(projectRoot, query, returnedIds, "find-rrf", results2.length * 50).catch(
-          () => {
-          }
-        );
+        getCurrentSessionId(projectRoot).then((sessionId) => {
+          return logRetrieval(
+            projectRoot,
+            query,
+            returnedIds,
+            "find-rrf",
+            results2.length * 50,
+            sessionId
+          );
+        }).catch(() => {
+        });
       });
     }
     return { results: results2, total: results2.length, tokensEstimated: results2.length * 50 };
@@ -48900,7 +48860,16 @@ async function searchBrainCompact(projectRoot, params) {
     setImmediate(() => {
       incrementCitationCounts(projectRoot, returnedIds).catch(() => {
       });
-      logRetrieval(projectRoot, query, returnedIds, "find", results.length * 50).catch(() => {
+      getCurrentSessionId(projectRoot).then((sessionId) => {
+        return logRetrieval(
+          projectRoot,
+          query,
+          returnedIds,
+          "find",
+          results.length * 50,
+          sessionId
+        );
+      }).catch(() => {
       });
     });
   }
@@ -49088,13 +49057,16 @@ async function fetchBrainEntries(projectRoot, params) {
     setImmediate(() => {
       incrementCitationCounts(projectRoot, fetchedIds).catch(() => {
       });
-      logRetrieval(
-        projectRoot,
-        fetchedIds.join(","),
-        fetchedIds,
-        "fetch",
-        results.length * 500
-      ).catch(() => {
+      getCurrentSessionId(projectRoot).then((sessionId) => {
+        return logRetrieval(
+          projectRoot,
+          fetchedIds.join(","),
+          fetchedIds,
+          "fetch",
+          results.length * 500,
+          sessionId
+        );
+      }).catch(() => {
       });
     });
   }
@@ -49512,6 +49484,15 @@ async function retrieveWithBudget(projectRoot, query, tokenBudget = 500, options
     excluded
   };
 }
+async function getCurrentSessionId(projectRoot) {
+  try {
+    const { sessionStatus: sessionStatus2 } = await Promise.resolve().then(() => (init_sessions2(), sessions_exports2));
+    const session = await sessionStatus2(projectRoot);
+    return session?.id;
+  } catch {
+    return void 0;
+  }
+}
 async function incrementCitationCounts(projectRoot, ids) {
   if (ids.length === 0) return;
   const { getBrainDb: getBrainDb2, getBrainNativeDb: getBrainNativeDb2 } = await Promise.resolve().then(() => (init_brain_sqlite(), brain_sqlite_exports));
@@ -49538,13 +49519,13 @@ async function incrementCitationCounts(projectRoot, ids) {
     }
   }
 }
-async function logRetrieval(projectRoot, query, entryIds, source, tokensUsed) {
+async function logRetrieval(projectRoot, query, entryIds, source, tokensUsed, sessionId) {
   if (entryIds.length === 0) return;
   const { getBrainDb: getBrainDb2, getBrainNativeDb: getBrainNativeDb2 } = await Promise.resolve().then(() => (init_brain_sqlite(), brain_sqlite_exports));
   await getBrainDb2(projectRoot);
   const nativeDb = getBrainNativeDb2();
   if (!nativeDb) return;
-  const createSql = "CREATE TABLE IF NOT EXISTS brain_retrieval_log (id INTEGER PRIMARY KEY AUTOINCREMENT,query TEXT NOT NULL,entry_ids TEXT NOT NULL,entry_count INTEGER NOT NULL,source TEXT NOT NULL,tokens_used INTEGER,created_at TEXT NOT NULL DEFAULT (datetime('now')))";
+  const createSql = "CREATE TABLE IF NOT EXISTS brain_retrieval_log (id INTEGER PRIMARY KEY AUTOINCREMENT,query TEXT NOT NULL,entry_ids TEXT NOT NULL,entry_count INTEGER NOT NULL,source TEXT NOT NULL,tokens_used INTEGER,session_id TEXT,created_at TEXT NOT NULL DEFAULT (datetime('now')))";
   try {
     nativeDb.prepare(createSql).run();
   } catch {
@@ -49552,8 +49533,15 @@ async function logRetrieval(projectRoot, query, entryIds, source, tokensUsed) {
   }
   try {
     nativeDb.prepare(
-      "INSERT INTO brain_retrieval_log (query, entry_ids, entry_count, source, tokens_used) VALUES (?, ?, ?, ?, ?)"
-    ).run(query, entryIds.join(","), entryIds.length, source, tokensUsed ?? null);
+      "INSERT INTO brain_retrieval_log (query, entry_ids, entry_count, source, tokens_used, session_id) VALUES (?, ?, ?, ?, ?, ?)"
+    ).run(
+      query,
+      entryIds.join(","),
+      entryIds.length,
+      source,
+      tokensUsed ?? null,
+      sessionId ?? null
+    );
   } catch {
   }
 }
@@ -50670,6 +50658,7 @@ __export(scaffold_exports, {
   checkConfig: () => checkConfig,
   checkGitignore: () => checkGitignore,
   checkGlobalHome: () => checkGlobalHome,
+  checkGlobalIdentity: () => checkGlobalIdentity,
   checkGlobalTemplates: () => checkGlobalTemplates,
   checkLogDir: () => checkLogDir,
   checkMemoryBridge: () => checkMemoryBridge,
@@ -50686,6 +50675,7 @@ __export(scaffold_exports, {
   ensureContributorMcp: () => ensureContributorMcp,
   ensureGitignore: () => ensureGitignore,
   ensureGlobalHome: () => ensureGlobalHome,
+  ensureGlobalIdentity: () => ensureGlobalIdentity,
   ensureGlobalScaffold: () => ensureGlobalScaffold,
   ensureGlobalTemplates: () => ensureGlobalTemplates,
   ensureProjectContext: () => ensureProjectContext,
@@ -50703,6 +50693,7 @@ import { execFile as execFile3 } from "node:child_process";
 import { randomUUID as randomUUID2 } from "node:crypto";
 import { existsSync as existsSync40, constants as fsConstants3, readFileSync as readFileSync23, statSync as statSync8 } from "node:fs";
 import { access as access3, copyFile as copyFile2, mkdir as mkdir6, readdir as readdir2, readFile as readFile7, rm as rm2, writeFile as writeFile6 } from "node:fs/promises";
+import { createRequire as createRequire6 } from "node:module";
 import { homedir as getHomedir } from "node:os";
 import { dirname as dirname10, join as join41, resolve as resolve5 } from "node:path";
 import { fileURLToPath as fileURLToPath4 } from "node:url";
@@ -51558,6 +51549,102 @@ async function ensureCleoOsHub() {
     details: `pi-extensions: ${piResult.copied} created/${piResult.kept} kept, global-recipes: ${recipesResult.copied} created/${recipesResult.kept} kept`
   };
 }
+function resolveIdentitySourcePath() {
+  const monorepoPath = join41(
+    process.cwd(),
+    "packages",
+    "cleo-os",
+    "starter-bundle",
+    "CLEOOS-IDENTITY.md"
+  );
+  if (existsSync40(monorepoPath)) return monorepoPath;
+  try {
+    const require2 = createRequire6(import.meta.url);
+    const pkgJson = require2.resolve("@cleocode/cleo-os/package.json");
+    const pkgDir = pkgJson.replace(/\/package\.json$/, "");
+    const installedPath = join41(pkgDir, "starter-bundle", "CLEOOS-IDENTITY.md");
+    if (existsSync40(installedPath)) return installedPath;
+  } catch {
+  }
+  return null;
+}
+async function ensureGlobalIdentity(forceRefresh = false) {
+  const sourcePath = resolveIdentitySourcePath();
+  if (!sourcePath) {
+    return {
+      action: "skipped",
+      path: "",
+      details: "CLEOOS-IDENTITY.md source not found in monorepo or installed package"
+    };
+  }
+  const cleoHome = getCleoHome();
+  const dst = join41(cleoHome, "CLEOOS-IDENTITY.md");
+  try {
+    await mkdir6(cleoHome, { recursive: true });
+  } catch (err) {
+    return {
+      action: "skipped",
+      path: dst,
+      details: `Failed to create global cleo home: ${err instanceof Error ? err.message : String(err)}`
+    };
+  }
+  if (existsSync40(dst) && !forceRefresh) {
+    return { action: "skipped", path: dst, details: "identity already present" };
+  }
+  const existedBefore = existsSync40(dst);
+  try {
+    const content = readFileSync23(sourcePath, "utf-8");
+    await writeFile6(dst, content);
+    return {
+      action: existedBefore ? "repaired" : "created",
+      path: dst,
+      details: `from ${sourcePath}`
+    };
+  } catch (err) {
+    return {
+      action: "skipped",
+      path: dst,
+      details: `Failed to write identity: ${err instanceof Error ? err.message : String(err)}`
+    };
+  }
+}
+function checkGlobalIdentity() {
+  const cleoHome = getCleoHome();
+  const identityPath = join41(cleoHome, "CLEOOS-IDENTITY.md");
+  if (!existsSync40(identityPath)) {
+    return {
+      id: "global_identity",
+      category: "global",
+      status: "failed",
+      message: "Global CLEOOS-IDENTITY.md not found \u2014 orchestrator persona missing",
+      details: { path: identityPath, exists: false },
+      fix: "cleo upgrade (auto-deploys identity)"
+    };
+  }
+  let size = 0;
+  try {
+    size = statSync8(identityPath).size;
+  } catch {
+  }
+  if (size === 0) {
+    return {
+      id: "global_identity",
+      category: "global",
+      status: "failed",
+      message: "Global CLEOOS-IDENTITY.md exists but is empty",
+      details: { path: identityPath, exists: true, size: 0 },
+      fix: "cleo upgrade --refresh-identity"
+    };
+  }
+  return {
+    id: "global_identity",
+    category: "global",
+    status: "passed",
+    message: "Global CLEOOS-IDENTITY.md present",
+    details: { path: identityPath, exists: true, size },
+    fix: ""
+  };
+}
 function checkGlobalHome() {
   const cleoHome = getCleoHome();
   if (!existsSync40(cleoHome)) {
@@ -55657,7 +55744,7 @@ __export(parser_exports, {
   parseFile: () => parseFile2
 });
 import { readFileSync as readFileSync64 } from "node:fs";
-import { createRequire as createRequire7 } from "node:module";
+import { createRequire as createRequire8 } from "node:module";
 import { relative as relative7 } from "node:path";
 function tryRequire(id) {
   try {
@@ -55858,7 +55945,7 @@ var init_parser3 = __esm({
   "packages/core/src/code/parser.ts"() {
     "use strict";
     init_tree_sitter_languages();
-    _require7 = createRequire7(import.meta.url);
+    _require7 = createRequire8(import.meta.url);
     _ParserClass = null;
     _QueryClass = null;
     _parserInstance = null;
@@ -55964,7 +56051,7 @@ __export(dependencies_exports, {
   getDependencySpecs: () => getDependencySpecs
 });
 import { execFileSync as execFileSync10 } from "node:child_process";
-import { createRequire as createRequire8 } from "node:module";
+import { createRequire as createRequire9 } from "node:module";
 import { dirname as dirname19 } from "node:path";
 import { fileURLToPath as fileURLToPath5 } from "node:url";
 function tryExec(cmd, args, timeoutMs = 3e3) {
@@ -56237,7 +56324,7 @@ var init_dependencies = __esm({
   "packages/core/src/system/dependencies.ts"() {
     "use strict";
     init_platform();
-    _require8 = createRequire8(import.meta.url);
+    _require8 = createRequire9(import.meta.url);
     _dirname = dirname19(fileURLToPath5(import.meta.url));
     DEPENDENCY_SPECS = [
       // ── Required ────────────────────────────────────────────────────────────
@@ -57540,8 +57627,8 @@ import { platform as platform4 } from "node:os";
 import { basename as basename17, dirname as dirname23, join as join107 } from "node:path";
 async function resolveSeedAgentsDir() {
   try {
-    const { createRequire: createRequire15 } = await import("node:module");
-    const req = createRequire15(import.meta.url);
+    const { createRequire: createRequire16 } = await import("node:module");
+    const req = createRequire16(import.meta.url);
     const agentsPkgMain = req.resolve("@cleocode/agents/package.json");
     const agentsPkgRoot = dirname23(agentsPkgMain);
     const candidate = join107(agentsPkgRoot, "seed-agents");
@@ -57568,8 +57655,8 @@ async function resolveSeedAgentsDir() {
 async function initAgentDefinition(created, warnings) {
   let agentSourceDir = null;
   try {
-    const { createRequire: createRequire15 } = await import("node:module");
-    const req = createRequire15(import.meta.url);
+    const { createRequire: createRequire16 } = await import("node:module");
+    const req = createRequire16(import.meta.url);
     const agentsPkgMain = req.resolve("@cleocode/agents/package.json");
     const agentsPkgRoot = dirname23(agentsPkgMain);
     const candidate = join107(agentsPkgRoot, "cleo-subagent");
@@ -57635,8 +57722,8 @@ async function initCoreSkills(created, warnings) {
     const packageRoot = getPackageRoot();
     let ctSkillsRoot = null;
     try {
-      const { createRequire: createRequire15 } = await import("node:module");
-      const req = createRequire15(import.meta.url);
+      const { createRequire: createRequire16 } = await import("node:module");
+      const req = createRequire16(import.meta.url);
       const skillsPkgMain = req.resolve("@cleocode/skills/package.json");
       const skillsPkgRoot = dirname23(skillsPkgMain);
       if (existsSync108(join107(skillsPkgRoot, "skills.json"))) {
@@ -58144,8 +58231,8 @@ async function deployStarterBundle(cleoDir, created, warnings) {
   if (hasCantFiles) return;
   let starterBundleSrc = null;
   try {
-    const { createRequire: createRequire15 } = await import("node:module");
-    const req = createRequire15(import.meta.url);
+    const { createRequire: createRequire16 } = await import("node:module");
+    const req = createRequire16(import.meta.url);
     const cleoOsPkgMain = req.resolve("@cleocode/cleo-os/package.json");
     const cleoOsPkgRoot = dirname23(cleoOsPkgMain);
     const candidate = join107(cleoOsPkgRoot, "starter-bundle");
@@ -58185,20 +58272,20 @@ async function deployStarterBundle(cleoDir, created, warnings) {
       }
     }
   }
-  const identitySrc = join107(starterBundleSrc, "CLEOOS-IDENTITY.md");
-  const identityDst = join107(cleoDir, "CLEOOS-IDENTITY.md");
-  if (existsSync108(identitySrc) && !existsSync108(identityDst)) {
-    await copyFile4(identitySrc, identityDst);
-  }
   try {
-    const { getCleoHome: getCleoHome2 } = await Promise.resolve().then(() => (init_paths(), paths_exports));
-    const globalIdentityDst = join107(getCleoHome2(), "CLEOOS-IDENTITY.md");
-    if (existsSync108(identitySrc) && !existsSync108(globalIdentityDst)) {
-      await copyFile4(identitySrc, globalIdentityDst);
+    const { ensureGlobalIdentity: ensureGlobalIdentity2 } = await Promise.resolve().then(() => (init_scaffold(), scaffold_exports));
+    const identityResult = await ensureGlobalIdentity2();
+    if (identityResult.action === "created") {
+      created.push(`identity: ${identityResult.path}`);
+    } else if (identityResult.action === "skipped" && identityResult.details) {
+      warnings.push(`identity skipped: ${identityResult.details}`);
     }
-  } catch {
+  } catch (err) {
+    warnings.push(`identity deploy failed: ${err instanceof Error ? err.message : String(err)}`);
   }
-  created.push("starter-bundle: team + agent .cant files + identity deployed to .cleo/");
+  created.push(
+    "starter-bundle: team + agent .cant files deployed to .cleo/ (identity at global XDG)"
+  );
 }
 var DIR_SYMLINK_TYPE2;
 var init_init = __esm({
@@ -72837,7 +72924,7 @@ function prepareSpawnMulti(skillNames, tokenValues, cwd) {
     const skillName = skillNames[i];
     const isPrimary = i === 0;
     const skill = findSkill(skillName, cwd);
-    if (!skill || !skill.content) {
+    if (!skill?.content) {
       continue;
     }
     let content = isPrimary ? skill.content : loadProgressive(skill.content);
@@ -75798,8 +75885,8 @@ init_agent_outputs();
 // packages/core/src/migration/checksum.ts
 import { createHash as createHash8 } from "node:crypto";
 import { readFileSync as readFileSync34 } from "node:fs";
-import { createRequire as createRequire6 } from "node:module";
-var _require6 = createRequire6(import.meta.url);
+import { createRequire as createRequire7 } from "node:module";
+var _require6 = createRequire7(import.meta.url);
 var { DatabaseSync: DatabaseSync4 } = _require6("node:sqlite");
 async function computeChecksum2(filePath) {
   const content = readFileSync34(filePath);
@@ -84499,7 +84586,7 @@ async function injectProtocol(skillContent, taskId, tokenValues, cwd, tier) {
 }
 async function orchestratorSpawnSkill(taskId, skillName, tokenValues, cwd, tier) {
   const skill = findSkill(skillName, cwd);
-  if (!skill || !skill.content) {
+  if (!skill?.content) {
     throw new CleoError(4 /* NOT_FOUND */, `Skill not found: ${skillName}`, {
       fix: `Check skills directory for ${skillName}/SKILL.md`
     });
@@ -85035,7 +85122,7 @@ async function buildPrompt(taskId, templateName = "TASK-EXECUTOR", cwd, tier) {
     throw new CleoError(4 /* NOT_FOUND */, `Task ${taskId} not found`);
   }
   const skill = findSkill(templateName, cwd);
-  if (!skill || !skill.content) {
+  if (!skill?.content) {
     const { canonical } = mapSkillName(templateName);
     throw new CleoError(4 /* NOT_FOUND */, `Skill template ${templateName} not found`, {
       fix: `Expected at skills/${canonical}/SKILL.md`
@@ -87535,7 +87622,7 @@ async function analyzeArchive(opts, accessor) {
   const acc = accessor ?? await getAccessor(opts.cwd);
   const data = await acc.loadArchive();
   const reportType = opts.report ?? "summary";
-  if (!data || !data.archivedTasks?.length) {
+  if (!data?.archivedTasks?.length) {
     return {
       report: reportType,
       filters: null,
@@ -88150,7 +88237,7 @@ init_schema_management();
 init_data_accessor();
 import { execFileSync as execFileSync11 } from "node:child_process";
 import { existsSync as existsSync92, readFileSync as readFileSync65, statSync as statSync19 } from "node:fs";
-import { createRequire as createRequire9 } from "node:module";
+import { createRequire as createRequire10 } from "node:module";
 import { join as join93 } from "node:path";
 
 // packages/core/src/validation/doctor/checks.ts
@@ -88964,7 +89051,7 @@ function calculateHealthStatus(checks) {
 
 // packages/core/src/system/health.ts
 init_dependencies();
-var _require9 = createRequire9(import.meta.url);
+var _require9 = createRequire10(import.meta.url);
 var databaseSyncCtor = (() => {
   try {
     return _require9("node:sqlite").DatabaseSync;
@@ -89512,6 +89599,7 @@ async function coreDoctorReport(projectRoot) {
   });
   checks.push(mapCheckResult(checkGlobalHome()));
   checks.push(mapCheckResult(checkGlobalTemplates()));
+  checks.push(mapCheckResult(checkGlobalIdentity()));
   checks.push(mapSchemaCheckResult(checkGlobalSchemas()));
   checks.push(mapCheckResult(checkLogDir(projectRoot)));
   const hookResults = await checkGitHooks(projectRoot);
@@ -93466,16 +93554,12 @@ function allEpicChildrenVerified(epicId, tasks2) {
   if (children.length === 0) return false;
   const incomplete = children.filter((t) => t.status !== "done");
   if (incomplete.length > 0) return false;
-  const unverified = children.filter(
-    (t) => t.status === "done" && (!t.verification || !t.verification.passed)
-  );
+  const unverified = children.filter((t) => t.status === "done" && !t.verification?.passed);
   return unverified.length === 0;
 }
 function allSiblingsVerified(parentId, tasks2) {
   const siblings = tasks2.filter((t) => t.parentId === parentId);
-  const unverifiedDone = siblings.filter(
-    (t) => t.status === "done" && (!t.verification || !t.verification.passed)
-  );
+  const unverifiedDone = siblings.filter((t) => t.status === "done" && !t.verification?.passed);
   const incomplete = siblings.filter(
     (t) => t.status === "pending" || t.status === "active" || t.status === "blocked"
   );
@@ -93853,7 +93937,7 @@ import { randomUUID as randomUUID8 } from "node:crypto";
 init_paths();
 import { existsSync as existsSync109, readFileSync as readFileSync77, writeFileSync as writeFileSync20 } from "node:fs";
 import { join as join108 } from "node:path";
-function getCurrentSessionId(cwd) {
+function getCurrentSessionId2(cwd) {
   if (process.env.CLEO_SESSION) return process.env.CLEO_SESSION;
   const sessionFile = join108(getCleoDir(cwd), ".current-session");
   if (existsSync109(sessionFile)) {
@@ -93881,7 +93965,7 @@ function createCliMeta(operation, duration_ms = 0) {
     duration_ms,
     timestamp: (/* @__PURE__ */ new Date()).toISOString()
   };
-  const sessionId = getCurrentSessionId();
+  const sessionId = getCurrentSessionId2();
   if (sessionId) {
     meta3["sessionId"] = sessionId;
   }
@@ -97383,6 +97467,155 @@ async function backfillBrainGraph(projectRoot) {
   };
 }
 
+// packages/core/src/memory/brain-export.ts
+init_brain_schema();
+init_brain_sqlite();
+async function exportBrainAsGexf(projectRoot) {
+  const db = await getBrainDb(projectRoot);
+  let nodes = [];
+  let edges = [];
+  try {
+    nodes = await db.select({
+      id: brainPageNodes.id,
+      nodeType: brainPageNodes.nodeType,
+      label: brainPageNodes.label,
+      qualityScore: brainPageNodes.qualityScore,
+      contentHash: brainPageNodes.contentHash,
+      lastActivityAt: brainPageNodes.lastActivityAt,
+      metadataJson: brainPageNodes.metadataJson,
+      createdAt: brainPageNodes.createdAt,
+      updatedAt: brainPageNodes.updatedAt
+    }).from(brainPageNodes);
+  } catch {
+    nodes = [];
+  }
+  try {
+    const rawEdges = await db.select({
+      fromId: brainPageEdges.fromId,
+      toId: brainPageEdges.toId,
+      edgeType: brainPageEdges.edgeType,
+      weight: brainPageEdges.weight,
+      createdAt: brainPageEdges.createdAt
+    }).from(brainPageEdges);
+    edges = rawEdges.map((e) => ({ ...e, provenance: null }));
+  } catch {
+    edges = [];
+  }
+  const gexf = buildGexfDocument(nodes, edges);
+  return {
+    success: true,
+    format: "gexf",
+    nodeCount: nodes.length,
+    edgeCount: edges.length,
+    content: gexf,
+    generatedAt: (/* @__PURE__ */ new Date()).toISOString()
+  };
+}
+async function exportBrainAsJson(projectRoot) {
+  const db = await getBrainDb(projectRoot);
+  let nodes = [];
+  let edges = [];
+  try {
+    nodes = await db.select({
+      id: brainPageNodes.id,
+      nodeType: brainPageNodes.nodeType,
+      label: brainPageNodes.label,
+      qualityScore: brainPageNodes.qualityScore,
+      contentHash: brainPageNodes.contentHash,
+      lastActivityAt: brainPageNodes.lastActivityAt,
+      metadataJson: brainPageNodes.metadataJson,
+      createdAt: brainPageNodes.createdAt,
+      updatedAt: brainPageNodes.updatedAt
+    }).from(brainPageNodes);
+  } catch {
+    nodes = [];
+  }
+  try {
+    const rawEdges = await db.select({
+      fromId: brainPageEdges.fromId,
+      toId: brainPageEdges.toId,
+      edgeType: brainPageEdges.edgeType,
+      weight: brainPageEdges.weight,
+      createdAt: brainPageEdges.createdAt
+    }).from(brainPageEdges);
+    edges = rawEdges.map((e) => ({ ...e, provenance: null }));
+  } catch {
+    edges = [];
+  }
+  return {
+    success: true,
+    format: "json",
+    nodeCount: nodes.length,
+    edgeCount: edges.length,
+    nodes,
+    edges,
+    generatedAt: (/* @__PURE__ */ new Date()).toISOString()
+  };
+}
+function buildGexfDocument(nodes, edges) {
+  const lines = [
+    '<?xml version="1.0" encoding="UTF-8"?>',
+    '<gexf xmlns="http://www.gexf.net/1.3draft" version="1.3">',
+    '  <meta lastmodifieddate="' + (/* @__PURE__ */ new Date()).toISOString() + '">',
+    "    <creator>CLEO Brain Export (T626-M6)</creator>",
+    "    <description>Living brain knowledge graph (brain_page_nodes + brain_page_edges)</description>",
+    "  </meta>",
+    '  <graph mode="static" defaultedgetype="directed">'
+  ];
+  lines.push('    <attributes class="node">');
+  lines.push('      <attribute id="node_type" title="Node Type" type="string"/>');
+  lines.push('      <attribute id="quality_score" title="Quality Score" type="double"/>');
+  lines.push('      <attribute id="content_hash" title="Content Hash" type="string"/>');
+  lines.push('      <attribute id="last_activity_at" title="Last Activity" type="string"/>');
+  lines.push('      <attribute id="created_at" title="Created At" type="string"/>');
+  lines.push("    </attributes>");
+  lines.push('    <attributes class="edge">');
+  lines.push('      <attribute id="edge_type" title="Edge Type" type="string"/>');
+  lines.push('      <attribute id="provenance" title="Provenance" type="string"/>');
+  lines.push('      <attribute id="created_at" title="Created At" type="string"/>');
+  lines.push("    </attributes>");
+  lines.push("    <nodes>");
+  for (const node of nodes) {
+    lines.push(`      <node id="${escapeXml(node.id)}" label="${escapeXml(node.label)}">`);
+    lines.push("        <attvalues>");
+    lines.push(`          <attvalue for="node_type" value="${escapeXml(node.nodeType)}"/>`);
+    lines.push(`          <attvalue for="quality_score" value="${node.qualityScore ?? 0.5}"/>`);
+    if (node.contentHash) {
+      lines.push(`          <attvalue for="content_hash" value="${escapeXml(node.contentHash)}"/>`);
+    }
+    lines.push(
+      `          <attvalue for="last_activity_at" value="${escapeXml(node.lastActivityAt)}"/>`
+    );
+    lines.push(`          <attvalue for="created_at" value="${escapeXml(node.createdAt)}"/>`);
+    lines.push("        </attvalues>");
+    lines.push("      </node>");
+  }
+  lines.push("    </nodes>");
+  lines.push("    <edges>");
+  for (let i = 0; i < edges.length; i++) {
+    const edge = edges[i];
+    const weight = edge.weight ?? 1;
+    lines.push(
+      `      <edge id="${i}" source="${escapeXml(edge.fromId)}" target="${escapeXml(edge.toId)}" weight="${weight}">`
+    );
+    lines.push("        <attvalues>");
+    lines.push(`          <attvalue for="edge_type" value="${escapeXml(edge.edgeType)}"/>`);
+    if (edge.provenance) {
+      lines.push(`          <attvalue for="provenance" value="${escapeXml(edge.provenance)}"/>`);
+    }
+    lines.push(`          <attvalue for="created_at" value="${escapeXml(edge.createdAt)}"/>`);
+    lines.push("        </attvalues>");
+    lines.push("      </edge>");
+  }
+  lines.push("    </edges>");
+  lines.push("  </graph>");
+  lines.push("</gexf>");
+  return lines.join("\n");
+}
+function escapeXml(text3) {
+  return text3.replace(/&/g, "&amp;").replace(/</g, "&lt;").replace(/>/g, "&gt;").replace(/"/g, "&quot;").replace(/'/g, "&apos;");
+}
+
 // packages/core/src/internal.ts
 init_brain_lifecycle();
 
@@ -97633,11 +97866,11 @@ init_paths();
 init_brain_sqlite();
 init_brain_search();
 import { existsSync as existsSync111 } from "node:fs";
-import { createRequire as createRequire10 } from "node:module";
+import { createRequire as createRequire11 } from "node:module";
 function typedAll3(db, sql16) {
   return db.prepare(sql16).all();
 }
-var _require10 = createRequire10(import.meta.url);
+var _require10 = createRequire11(import.meta.url);
 var { DatabaseSync: DatabaseSync5 } = _require10("node:sqlite");
 var VALID_OBSERVATION_TYPES = /* @__PURE__ */ new Set([
   "discovery",
@@ -97802,7 +98035,7 @@ Use --source <path> to specify a custom location.`
       }
       try {
         for (const row of batch) {
-          if (!row.learned || !row.learned.trim()) {
+          if (!row.learned?.trim()) {
             continue;
           }
           const learnId = `CML-${row.id}`;
@@ -100208,7 +100441,7 @@ init_backup();
 // packages/core/src/store/backup-pack.ts
 import crypto5 from "node:crypto";
 import fs4 from "node:fs";
-import { createRequire as createRequire11 } from "node:module";
+import { createRequire as createRequire12 } from "node:module";
 import os2 from "node:os";
 import path4 from "node:path";
 
@@ -103214,7 +103447,7 @@ function assertT310Ready(projectRoot) {
 }
 
 // packages/core/src/store/backup-pack.ts
-var _require11 = createRequire11(import.meta.url);
+var _require11 = createRequire12(import.meta.url);
 var { DatabaseSync: DatabaseSync6 } = _require11("node:sqlite");
 function resolveContractsSchemasDir() {
   const candidates = [
@@ -103713,9 +103946,9 @@ init_conduit_sqlite();
 init_global_salt();
 init_signaldock_sqlite();
 import { existsSync as existsSync117, mkdirSync as mkdirSync27, renameSync as renameSync9, unlinkSync as unlinkSync9 } from "node:fs";
-import { createRequire as createRequire12 } from "node:module";
+import { createRequire as createRequire13 } from "node:module";
 import { join as join114 } from "node:path";
-var _require12 = createRequire12(import.meta.url);
+var _require12 = createRequire13(import.meta.url);
 var { DatabaseSync: DatabaseSync7 } = _require12("node:sqlite");
 var PROJECT_TIER_TABLES = [
   "messages",
@@ -104160,7 +104393,7 @@ function measureDependencyDepth(taskId, taskMap, visited = /* @__PURE__ */ new S
   if (visited.has(taskId)) return 0;
   visited.add(taskId);
   const task = taskMap.get(taskId);
-  if (!task || !task.depends || task.depends.length === 0) return 0;
+  if (!task?.depends || task.depends.length === 0) return 0;
   let maxDepth = 0;
   for (const depId of task.depends) {
     const depth = 1 + measureDependencyDepth(depId, taskMap, visited);
@@ -104514,7 +104747,7 @@ async function coreTaskUnarchive(projectRoot, taskId, params) {
     throw new Error(`Task '${taskId}' already exists in active tasks`);
   }
   const archive = await accessor.loadArchive();
-  if (!archive || !archive.archivedTasks) {
+  if (!archive?.archivedTasks) {
     throw new Error("No archive file found");
   }
   const taskIndex = archive.archivedTasks.findIndex((t) => t.id === taskId);
@@ -105875,6 +106108,16 @@ async function runUpgrade(options = {}) {
       }
     } catch {
     }
+    try {
+      const { ensureGlobalIdentity: ensureGlobalIdentity2 } = await Promise.resolve().then(() => (init_scaffold(), scaffold_exports));
+      const identityResult = await ensureGlobalIdentity2();
+      actions.push({
+        action: "global_identity",
+        status: identityResult.action === "created" || identityResult.action === "repaired" ? "applied" : "skipped",
+        details: `${identityResult.path} (${identityResult.details ?? identityResult.action})`
+      });
+    } catch {
+    }
     try {
       const skillsCreated = [];
       const skillsWarnings = [];
@@ -108516,11 +108759,11 @@ init_tasks_schema();
 var import__ = __toESM(require__(), 1);
 import crypto6 from "node:crypto";
 import fs6 from "node:fs";
-import { createRequire as createRequire13 } from "node:module";
+import { createRequire as createRequire14 } from "node:module";
 import os3 from "node:os";
 import path6 from "node:path";
 import { default as addFormatsImport2 } from "ajv-formats";
-var _require13 = createRequire13(import.meta.url);
+var _require13 = createRequire14(import.meta.url);
 var { DatabaseSync: DatabaseSync8 } = _require13("node:sqlite");
 var ajv2020Mod = import__.default;
 var Ajv2020 = typeof ajv2020Mod.default === "function" ? ajv2020Mod.default : import__.default;
@@ -110021,7 +110264,7 @@ async function decrypt(ciphertext, projectPath) {
 init_paths();
 import { randomBytes as randomBytes17 } from "node:crypto";
 import { existsSync as existsSync127, mkdirSync as mkdirSync32, readFileSync as readFileSync93, statSync as statSync21, writeFileSync as writeFileSync23 } from "node:fs";
-import { createRequire as createRequire14 } from "node:module";
+import { createRequire as createRequire15 } from "node:module";
 import { join as join122 } from "node:path";
 
 // packages/core/src/store/api-key-kdf.ts
@@ -110048,7 +110291,7 @@ function deriveApiKey(input) {
 init_conduit_sqlite();
 init_global_salt();
 init_signaldock_sqlite();
-var _require14 = createRequire14(import.meta.url);
+var _require14 = createRequire15(import.meta.url);
 var { DatabaseSync: DatabaseSync9 } = _require14("node:sqlite");
 var MACHINE_KEY_LENGTH = 32;
 function readMachineKey() {
@@ -110960,6 +111203,8 @@ export {
   ensureSqliteDb,
   estimateContext,
   executeTransfer,
+  exportBrainAsGexf,
+  exportBrainAsJson,
   exportSnapshot,
   exportTasks,
   exportTasksPackage,
@@ -111029,7 +111274,7 @@ export {
   getConfigValue,
   getContextDrift,
   getCriticalPath,
-  getCurrentSessionId,
+  getCurrentSessionId2 as getCurrentSessionId,
   getDashboard,
   getDb,
   getDecisionLog,