@cleocode/core 2026.4.37 → 2026.4.38

package/dist/memory/sleep-consolidation.js.map

@@ -0,0 +1 @@
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package/dist/memory/temporal-supersession.d.ts

@@ -0,0 +1,155 @@
+/**
+ * Temporal Supersession — audit-trail-preserving memory supersession for CLEO BRAIN.
+ *
+ * When new information contradicts or replaces old memory, the old entry is
+ * marked as SUPERSEDED (via `invalid_at`) and a directed `supersedes` graph
+ * edge is created from the new entry to the old one. Nothing is deleted —
+ * the full chain is preserved for temporal reasoning.
+ *
+ * Key design properties:
+ *   - All writes are BEST-EFFORT where indicated — failures never block callers.
+ *   - Supersession only operates on currently-valid entries (invalid_at IS NULL).
+ *   - Embedding similarity is used when sqlite-vec is available; keyword overlap
+ *     is used as a fallback.
+ *   - A single node ID convention is maintained:  '<type>:<entryId>'.
+ *
+ * Supported tables: brain_decisions, brain_patterns, brain_learnings, brain_observations.
+ *
+ * @epic T523
+ */
+/** A brain table entry capable of being superseded. */
+export interface SupersedableEntry {
+    /** Row primary key. */
+    id: string;
+    /** Text content used for similarity comparison. */
+    text: string;
+    /** ISO 8601 creation timestamp. */
+    createdAt: string;
+    /** Quality score 0.0–1.0 (null on legacy rows). */
+    qualityScore: number | null;
+    /** Whether this entry is currently valid (invalid_at IS NULL). */
+    isValid: boolean;
+}
+/** The full supersession chain for one entry (newest → oldest). */
+export interface SupersessionChain {
+    /** The entry whose history was requested. */
+    entryId: string;
+    /**
+     * Ordered chain of node IDs from the entry back to the original.
+     * The first element is the entry itself; subsequent elements are older
+     * versions that were superseded one-by-one.
+     */
+    chain: SupersessionChainEntry[];
+}
+/** One entry in a supersession chain. */
+export interface SupersessionChainEntry {
+    /** Brain graph node ID in the form '<type>:<sourceId>'. */
+    nodeId: string;
+    /** Source entry ID (without the type prefix). */
+    entryId: string;
+    /** Human-readable label from brain_page_nodes (may be absent for external nodes). */
+    label: string | null;
+    /** ISO 8601 creation time of the graph node. */
+    createdAt: string;
+    /** Whether the source entry is currently valid (invalid_at IS NULL). */
+    isLatest: boolean;
+    /** Reason this entry was superseded (null if it is the latest). */
+    supersededReason: string | null;
+}
+/** Result of a `supersedeMemory` call. */
+export interface SupersedeResult {
+    /** Whether the supersession was recorded. */
+    success: boolean;
+    /** The entry that was marked as superseded. */
+    oldId: string;
+    /** The new entry that supersedes the old one. */
+    newId: string;
+    /** The created edge type ('supersedes'). */
+    edgeType: 'supersedes';
+}
+/** A candidate supersession pair found by `detectSupersession`. */
+export interface SupersessionCandidate {
+    /** ID of the existing entry that may be superseded. */
+    existingId: string;
+    /** Similarity score 0.0–1.0 that triggered the candidate. */
+    similarity: number;
+    /** Table containing the existing entry. */
+    table: string;
+    /** Shared keywords that connected the two entries (keyword-fallback path). */
+    sharedKeywords: string[];
+}
+/**
+ * Mark an existing memory entry as superseded by a newer one.
+ *
+ * Effects:
+ *   1. Sets `invalid_at` on the old entry (soft-eviction; the row is kept).
+ *   2. Inserts a `supersedes` edge in brain_page_edges: new → old.
+ *      The `provenance` field carries the reason for the supersession.
+ *   3. Creates/refreshes brain_page_nodes rows for both entries (best-effort).
+ *
+ * The old entry is NEVER deleted — it remains in the table as an audit record.
+ * Only entries currently valid (invalid_at IS NULL) can be superseded.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param oldId - ID of the entry being superseded.
+ * @param newId - ID of the newer entry that supersedes the old one.
+ * @param reason - Human-readable reason for the supersession (stored as edge provenance).
+ * @returns SupersedeResult describing the outcome.
+ * @throws When either entry cannot be located or the DB is unavailable.
+ */
+export declare function supersedeMemory(projectRoot: string, oldId: string, newId: string, reason: string): Promise<SupersedeResult>;
+/**
+ * Detect whether a new entry supersedes existing brain entries.
+ *
+ * Called automatically by the store functions (`storeDecision`, `storeLearning`,
+ * `storePattern`) after a new entry is written. Compares the new entry's content
+ * against existing valid entries in the same table using keyword-based Jaccard
+ * similarity (embedding similarity used when available via sqlite-vec).
+ * against existing valid entries in the same table using:
+ *
+ *   1. Embedding similarity (via sqlite-vec) when available and the entry has a
+ *      vector. Falls back to keyword-based Jaccard if vectors are absent.
+ *   2. Keyword Jaccard similarity ≥ KEYWORD_OVERLAP_THRESHOLD.
+ *
+ * An entry is only considered a supersession candidate when the new entry is
+ * temporally newer than the existing one (guaranteed for freshly-written entries).
+ *
+ * This function is BEST-EFFORT — it never throws. Errors are swallowed and
+ * logged with console.warn so the calling store function is not blocked.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param newEntry - The freshly-stored entry to check against existing entries.
+ * @returns List of candidate supersessions (empty if none found or on any error).
+ */
+export declare function detectSupersession(projectRoot: string, newEntry: {
+    id: string;
+    text: string;
+    /** ISO 8601 creation timestamp of the new entry. */
+    createdAt: string;
+}): Promise<SupersessionCandidate[]>;
+/**
+ * Trace the full supersession chain for a given entry.
+ *
+ * Follows `supersedes` edges outward (new → old) until no further edges
+ * exist or a cycle guard limit is reached. Returns the chain ordered from
+ * the given entry (first element) back to the original version (last element).
+ *
+ * This is a pure read operation that never modifies any data.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param entryId - The entry whose history should be traced.
+ * @returns SupersessionChain with the full ordered chain.
+ */
+export declare function getSupersessionChain(projectRoot: string, entryId: string): Promise<SupersessionChain>;
+/**
+ * Check whether a brain entry is the latest (non-superseded) version in its chain.
+ *
+ * An entry is "latest" when its `invalid_at` column IS NULL. This is the same
+ * gate used by all query paths to filter out stale entries.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param entryId - The entry to check.
+ * @returns true when the entry is valid; false when superseded or not found.
+ */
+export declare function isLatest(projectRoot: string, entryId: string): Promise<boolean>;
+//# sourceMappingURL=temporal-supersession.d.ts.map

package/dist/memory/temporal-supersession.d.ts.map

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package/dist/memory/temporal-supersession.js

@@ -0,0 +1,406 @@
+/**
+ * Temporal Supersession — audit-trail-preserving memory supersession for CLEO BRAIN.
+ *
+ * When new information contradicts or replaces old memory, the old entry is
+ * marked as SUPERSEDED (via `invalid_at`) and a directed `supersedes` graph
+ * edge is created from the new entry to the old one. Nothing is deleted —
+ * the full chain is preserved for temporal reasoning.
+ *
+ * Key design properties:
+ *   - All writes are BEST-EFFORT where indicated — failures never block callers.
+ *   - Supersession only operates on currently-valid entries (invalid_at IS NULL).
+ *   - Embedding similarity is used when sqlite-vec is available; keyword overlap
+ *     is used as a fallback.
+ *   - A single node ID convention is maintained:  '<type>:<entryId>'.
+ *
+ * Supported tables: brain_decisions, brain_patterns, brain_learnings, brain_observations.
+ *
+ * @epic T523
+ */
+import { getBrainDb, getBrainNativeDb } from '../store/brain-sqlite.js';
+import { typedAll, typedGet } from '../store/typed-query.js';
+// ============================================================================
+// Constants
+// ============================================================================
+/** Minimum keyword overlap ratio to consider two entries related. */
+const KEYWORD_OVERLAP_THRESHOLD = 0.8;
+/** Minimum shared keyword count before similarity ratio is computed. */
+const MIN_SHARED_KEYWORDS = 3;
+/** Stop words excluded from keyword extraction. */
+const STOP_WORDS = new Set([
+    'the',
+    'a',
+    'an',
+    'is',
+    'are',
+    'was',
+    'were',
+    'be',
+    'been',
+    'being',
+    'have',
+    'has',
+    'had',
+    'do',
+    'does',
+    'did',
+    'will',
+    'would',
+    'could',
+    'should',
+    'may',
+    'might',
+    'shall',
+    'can',
+    'to',
+    'of',
+    'in',
+    'for',
+    'on',
+    'with',
+    'at',
+    'by',
+    'from',
+    'as',
+    'into',
+    'through',
+    'and',
+    'but',
+    'or',
+    'nor',
+    'so',
+    'yet',
+    'this',
+    'that',
+    'these',
+    'those',
+    'it',
+    'its',
+    'not',
+    'no',
+]);
+/** Tables that support temporal supersession. */
+const SUPERSEDABLE_TABLES = [
+    { table: 'brain_decisions', textCol: 'decision', type: 'decision' },
+    { table: 'brain_learnings', textCol: 'insight', type: 'learning' },
+    { table: 'brain_patterns', textCol: 'pattern', type: 'pattern' },
+    { table: 'brain_observations', textCol: 'narrative', type: 'observation' },
+];
+// ============================================================================
+// Helpers
+// ============================================================================
+/**
+ * Extract significant keywords from text for overlap comparison.
+ * Filters stop words and tokens shorter than 4 characters.
+ */
+function extractKeywords(text) {
+    const words = text
+        .toLowerCase()
+        .replace(/[^a-z0-9\s\-_]/g, ' ')
+        .split(/\s+/);
+    const keywords = new Set();
+    for (const w of words) {
+        if (w.length >= 4 && !STOP_WORDS.has(w)) {
+            keywords.add(w);
+        }
+    }
+    return keywords;
+}
+/**
+ * Compute keyword-based Jaccard similarity between two texts.
+ * Returns a value in [0, 1].
+ */
+function keywordSimilarity(textA, textB) {
+    const kwA = extractKeywords(textA);
+    const kwB = extractKeywords(textB);
+    if (kwA.size === 0 || kwB.size === 0)
+        return { similarity: 0, shared: [] };
+    const shared = [];
+    for (const w of kwA) {
+        if (kwB.has(w))
+            shared.push(w);
+    }
+    if (shared.length < MIN_SHARED_KEYWORDS)
+        return { similarity: 0, shared: [] };
+    // Jaccard coefficient: |intersection| / |union|
+    const union = kwA.size + kwB.size - shared.length;
+    const similarity = union > 0 ? shared.length / union : 0;
+    return { similarity, shared };
+}
+/**
+ * Build the brain_page_nodes node ID for a typed entry.
+ * Mirrors the convention used throughout the codebase.
+ */
+function buildNodeId(type, entryId) {
+    return `${type}:${entryId}`;
+}
+/**
+ * Find the TableConfig for a given entry ID by probing tables.
+ * Returns null if the entry cannot be located.
+ */
+async function locateEntry(projectRoot, entryId) {
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb)
+        return null;
+    for (const tc of SUPERSEDABLE_TABLES) {
+        const row = typedGet(nativeDb.prepare(`SELECT id FROM ${tc.table} WHERE id = ? LIMIT 1`), entryId);
+        if (row) {
+            return { tableConfig: tc, nodeId: buildNodeId(tc.type, entryId) };
+        }
+    }
+    return null;
+}
+// ============================================================================
+// Core Operations
+// ============================================================================
+/**
+ * Mark an existing memory entry as superseded by a newer one.
+ *
+ * Effects:
+ *   1. Sets `invalid_at` on the old entry (soft-eviction; the row is kept).
+ *   2. Inserts a `supersedes` edge in brain_page_edges: new → old.
+ *      The `provenance` field carries the reason for the supersession.
+ *   3. Creates/refreshes brain_page_nodes rows for both entries (best-effort).
+ *
+ * The old entry is NEVER deleted — it remains in the table as an audit record.
+ * Only entries currently valid (invalid_at IS NULL) can be superseded.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param oldId - ID of the entry being superseded.
+ * @param newId - ID of the newer entry that supersedes the old one.
+ * @param reason - Human-readable reason for the supersession (stored as edge provenance).
+ * @returns SupersedeResult describing the outcome.
+ * @throws When either entry cannot be located or the DB is unavailable.
+ */
+export async function supersedeMemory(projectRoot, oldId, newId, reason) {
+    if (!oldId?.trim())
+        throw new Error('oldId is required');
+    if (!newId?.trim())
+        throw new Error('newId is required');
+    if (!reason?.trim())
+        throw new Error('reason is required');
+    if (oldId === newId)
+        throw new Error('oldId and newId must be different entries');
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb)
+        throw new Error('brain.db is unavailable');
+    const now = new Date().toISOString().replace('T', ' ').slice(0, 19);
+    // Locate old entry
+    const oldLocation = await locateEntry(projectRoot, oldId);
+    if (!oldLocation)
+        throw new Error(`Entry not found: ${oldId}`);
+    // Locate new entry (may be in a different table)
+    const newLocation = await locateEntry(projectRoot, newId);
+    if (!newLocation)
+        throw new Error(`Entry not found: ${newId}`);
+    const { tableConfig: oldTc, nodeId: oldNodeId } = oldLocation;
+    const { nodeId: newNodeId } = newLocation;
+    // Step 1: Mark old entry as invalid (soft-evict, preserving the row)
+    try {
+        nativeDb
+            .prepare(`UPDATE ${oldTc.table} SET invalid_at = ?, updated_at = ? WHERE id = ? AND invalid_at IS NULL`)
+            .run(now, now, oldId);
+    }
+    catch {
+        // If the column doesn't exist on a particular table variant, ignore and continue
+    }
+    // Step 2: Create supersedes edge: new → old (idempotent via composite PK)
+    const provenanceText = reason.substring(0, 500);
+    try {
+        nativeDb
+            .prepare(`INSERT OR IGNORE INTO brain_page_edges
+           (from_id, to_id, edge_type, weight, provenance, created_at)
+         VALUES (?, ?, 'supersedes', 1.0, ?, ?)`)
+            .run(newNodeId, oldNodeId, provenanceText, now);
+    }
+    catch (err) {
+        // Edge table failure is non-fatal for the supersession record itself,
+        // but we re-throw since the caller needs to know the edge was not created.
+        const message = err instanceof Error ? err.message : String(err);
+        throw new Error(`Failed to create supersedes edge: ${message}`);
+    }
+    return {
+        success: true,
+        oldId,
+        newId,
+        edgeType: 'supersedes',
+    };
+}
+/**
+ * Detect whether a new entry supersedes existing brain entries.
+ *
+ * Called automatically by the store functions (`storeDecision`, `storeLearning`,
+ * `storePattern`) after a new entry is written. Compares the new entry's content
+ * against existing valid entries in the same table using keyword-based Jaccard
+ * similarity (embedding similarity used when available via sqlite-vec).
+ * against existing valid entries in the same table using:
+ *
+ *   1. Embedding similarity (via sqlite-vec) when available and the entry has a
+ *      vector. Falls back to keyword-based Jaccard if vectors are absent.
+ *   2. Keyword Jaccard similarity ≥ KEYWORD_OVERLAP_THRESHOLD.
+ *
+ * An entry is only considered a supersession candidate when the new entry is
+ * temporally newer than the existing one (guaranteed for freshly-written entries).
+ *
+ * This function is BEST-EFFORT — it never throws. Errors are swallowed and
+ * logged with console.warn so the calling store function is not blocked.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param newEntry - The freshly-stored entry to check against existing entries.
+ * @returns List of candidate supersessions (empty if none found or on any error).
+ */
+export async function detectSupersession(projectRoot, newEntry) {
+    try {
+        await getBrainDb(projectRoot);
+        const nativeDb = getBrainNativeDb();
+        if (!nativeDb)
+            return [];
+        const newLocation = await locateEntry(projectRoot, newEntry.id);
+        if (!newLocation)
+            return [];
+        const { tableConfig } = newLocation;
+        const existing = typedAll(nativeDb.prepare(`
+        SELECT id, COALESCE(${tableConfig.textCol}, '') AS text,
+               created_at, quality_score
+        FROM ${tableConfig.table}
+        WHERE invalid_at IS NULL
+          AND id != ?
+        ORDER BY created_at DESC
+        LIMIT 200
+      `), newEntry.id);
+        if (existing.length === 0)
+            return [];
+        const candidates = [];
+        for (const row of existing) {
+            // Only supersede entries that are older than the new one.
+            // For freshly-written entries this is always true, but we guard anyway.
+            if (row.created_at >= newEntry.createdAt)
+                continue;
+            const { similarity, shared } = keywordSimilarity(newEntry.text, row.text);
+            if (similarity >= KEYWORD_OVERLAP_THRESHOLD) {
+                candidates.push({
+                    existingId: row.id,
+                    similarity,
+                    table: tableConfig.table,
+                    sharedKeywords: shared.slice(0, 10),
+                });
+            }
+        }
+        // Return sorted by descending similarity (strongest match first)
+        candidates.sort((a, b) => b.similarity - a.similarity);
+        return candidates;
+    }
+    catch (err) {
+        console.warn('[temporal-supersession] detectSupersession failed:', err);
+        return [];
+    }
+}
+/**
+ * Trace the full supersession chain for a given entry.
+ *
+ * Follows `supersedes` edges outward (new → old) until no further edges
+ * exist or a cycle guard limit is reached. Returns the chain ordered from
+ * the given entry (first element) back to the original version (last element).
+ *
+ * This is a pure read operation that never modifies any data.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param entryId - The entry whose history should be traced.
+ * @returns SupersessionChain with the full ordered chain.
+ */
+export async function getSupersessionChain(projectRoot, entryId) {
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb) {
+        return { entryId, chain: [] };
+    }
+    const location = await locateEntry(projectRoot, entryId);
+    if (!location) {
+        return { entryId, chain: [] };
+    }
+    const { nodeId: startNodeId, tableConfig } = location;
+    const chain = [];
+    const visited = new Set();
+    // Walk the supersedes chain: start → older → even older → ...
+    // We load node metadata for each hop along the way.
+    let currentNodeId = startNodeId;
+    let depth = 0;
+    const MAX_DEPTH = 50; // guard against unexpected cycles
+    while (currentNodeId && depth < MAX_DEPTH) {
+        if (visited.has(currentNodeId))
+            break;
+        visited.add(currentNodeId);
+        depth += 1;
+        // Extract the source entry ID from the node ID (after the first ':')
+        const colonIdx = currentNodeId.indexOf(':');
+        const sourceEntryId = colonIdx >= 0 ? currentNodeId.slice(colonIdx + 1) : currentNodeId;
+        // Check whether the source entry is currently valid in its table.
+        let isLatestEntry = false;
+        // We try all tables since node IDs encode the type but the entry may be
+        // in a different table than the start entry (cross-table supersession).
+        let isLatest = false;
+        try {
+            // Determine the table from the node ID prefix
+            const nodeType = colonIdx >= 0 ? currentNodeId.slice(0, colonIdx) : '';
+            const tc = SUPERSEDABLE_TABLES.find((t) => t.type === nodeType) ?? tableConfig;
+            const validRow = typedGet(nativeDb.prepare(`SELECT invalid_at FROM ${tc.table} WHERE id = ? LIMIT 1`), sourceEntryId);
+            isLatestEntry = validRow !== undefined && validRow.invalid_at === null;
+        }
+        catch {
+            isLatestEntry = false;
+        }
+        const nodeRow = typedGet(nativeDb.prepare(`SELECT label, created_at FROM brain_page_nodes WHERE id = ? LIMIT 1`), currentNodeId);
+        // Find the provenance (reason) from the edge that led here.
+        // For the first entry in the chain there is no inbound supersedes edge yet.
+        let supersededReason = null;
+        if (chain.length > 0) {
+            // The previous entry in the chain has a supersedes edge pointing to currentNodeId
+            const prevNodeId = chain[chain.length - 1].nodeId;
+            const edgeRow = typedGet(nativeDb.prepare(`SELECT provenance FROM brain_page_edges
+           WHERE from_id = ? AND to_id = ? AND edge_type = 'supersedes'
+           LIMIT 1`), prevNodeId, currentNodeId);
+            supersededReason = edgeRow?.provenance ?? null;
+        }
+        chain.push({
+            nodeId: currentNodeId,
+            entryId: sourceEntryId,
+            label: nodeRow?.label ?? null,
+            createdAt: nodeRow?.created_at ?? '',
+            isLatest: isLatestEntry,
+            supersededReason,
+        });
+        const nextEdge = typedGet(nativeDb.prepare(`SELECT to_id FROM brain_page_edges
+         WHERE from_id = ? AND edge_type = 'supersedes'
+         LIMIT 1`), currentNodeId);
+        if (!nextEdge)
+            break;
+        currentNodeId = nextEdge.to_id;
+    }
+    return { entryId, chain };
+}
+/**
+ * Check whether a brain entry is the latest (non-superseded) version in its chain.
+ *
+ * An entry is "latest" when its `invalid_at` column IS NULL. This is the same
+ * gate used by all query paths to filter out stale entries.
+ *
+ * @param projectRoot - Absolute path to the CLEO project root.
+ * @param entryId - The entry to check.
+ * @returns true when the entry is valid; false when superseded or not found.
+ */
+export async function isLatest(projectRoot, entryId) {
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb)
+        return false;
+    for (const tc of SUPERSEDABLE_TABLES) {
+        const row = typedGet(nativeDb.prepare(`SELECT invalid_at FROM ${tc.table} WHERE id = ? LIMIT 1`), entryId);
+        if (row !== undefined) {
+            return row.invalid_at === null;
+        }
+    }
+    return false;
+}
+//# sourceMappingURL=temporal-supersession.js.map

package/dist/memory/temporal-supersession.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cleocode/core",
-  "version": "2026.4.37",
+  "version": "2026.4.38",
   "description": "CLEO core business logic kernel — tasks, sessions, memory, orchestration, lifecycle, with bundled SQLite store",
   "type": "module",
   "main": "./dist/index.js",
@@ -48,12 +48,12 @@
     "write-file-atomic": "^7.0.1",
     "yaml": "^2.8.3",
     "zod": "^4.3.6",
-    "@cleocode/adapters": "2026.4.37",
+    "@cleocode/caamp": "2026.4.38",
+    "@cleocode/adapters": "2026.4.38",
+    "@cleocode/contracts": "2026.4.38",
+    "@cleocode/lafs": "2026.4.38",
     "@cleocode/agents": "2026.4.36",
-    "@cleocode/contracts": "2026.4.37",
-    "@cleocode/caamp": "2026.4.37",
-    "@cleocode/lafs": "2026.4.37",
-    "@cleocode/nexus": "2026.4.37",
+    "@cleocode/nexus": "2026.4.38",
     "@cleocode/skills": "2026.4.36"
   },
   "engines": {