@cleocode/core 2026.4.35 → 2026.4.37

package/dist/store/brain-schema.d.ts

@@ -2003,6 +2003,137 @@ export declare const brainPageEdges: import("drizzle-orm/sqlite-core").SQLiteTab
     };
     dialect: "sqlite";
 }>;
+/**
+ * Retrieval log tracks which brain entries are returned together in search
+ * results. This data drives:
+ *   - Co-retrieval edge strengthening (consolidation step 6)
+ *   - Memory quality instrumentation (retrieval frequency tracking)
+ *   - Citation count validation (corroboration for tier promotion)
+ *
+ * Each row records one retrieval event: the query, which entries were returned,
+ * and the retrieval source (find/fetch/hybrid).
+ */
+export declare const brainRetrievalLog: import("drizzle-orm/sqlite-core").SQLiteTableWithColumns<{
+    name: "brain_retrieval_log";
+    schema: undefined;
+    columns: {
+        id: import("drizzle-orm/sqlite-core").SQLiteColumn<{
+            name: string;
+            tableName: "brain_retrieval_log";
+            dataType: "number int53";
+            data: number;
+            driverParam: number;
+            notNull: true;
+            hasDefault: true;
+            isPrimaryKey: true;
+            isAutoincrement: false;
+            hasRuntimeDefault: false;
+            enumValues: undefined;
+            baseColumn: never;
+            identity: undefined;
+            generated: undefined;
+        }, {}>;
+        query: import("drizzle-orm/sqlite-core").SQLiteColumn<{
+            name: string;
+            tableName: "brain_retrieval_log";
+            dataType: "string";
+            data: string;
+            driverParam: string;
+            notNull: true;
+            hasDefault: false;
+            isPrimaryKey: false;
+            isAutoincrement: false;
+            hasRuntimeDefault: false;
+            enumValues: [string, ...string[]];
+            baseColumn: never;
+            identity: undefined;
+            generated: undefined;
+        }, {}>;
+        entryIds: import("drizzle-orm/sqlite-core").SQLiteColumn<{
+            name: string;
+            tableName: "brain_retrieval_log";
+            dataType: "string";
+            data: string;
+            driverParam: string;
+            notNull: true;
+            hasDefault: false;
+            isPrimaryKey: false;
+            isAutoincrement: false;
+            hasRuntimeDefault: false;
+            enumValues: [string, ...string[]];
+            baseColumn: never;
+            identity: undefined;
+            generated: undefined;
+        }, {}>;
+        entryCount: import("drizzle-orm/sqlite-core").SQLiteColumn<{
+            name: string;
+            tableName: "brain_retrieval_log";
+            dataType: "number int53";
+            data: number;
+            driverParam: number;
+            notNull: true;
+            hasDefault: false;
+            isPrimaryKey: false;
+            isAutoincrement: false;
+            hasRuntimeDefault: false;
+            enumValues: undefined;
+            baseColumn: never;
+            identity: undefined;
+            generated: undefined;
+        }, {}>;
+        source: import("drizzle-orm/sqlite-core").SQLiteColumn<{
+            name: string;
+            tableName: "brain_retrieval_log";
+            dataType: "string";
+            data: string;
+            driverParam: string;
+            notNull: true;
+            hasDefault: false;
+            isPrimaryKey: false;
+            isAutoincrement: false;
+            hasRuntimeDefault: false;
+            enumValues: [string, ...string[]];
+            baseColumn: never;
+            identity: undefined;
+            generated: undefined;
+        }, {}>;
+        tokensUsed: import("drizzle-orm/sqlite-core").SQLiteColumn<{
+            name: string;
+            tableName: "brain_retrieval_log";
+            dataType: "number int53";
+            data: number;
+            driverParam: number;
+            notNull: false;
+            hasDefault: false;
+            isPrimaryKey: false;
+            isAutoincrement: false;
+            hasRuntimeDefault: false;
+            enumValues: undefined;
+            baseColumn: never;
+            identity: undefined;
+            generated: undefined;
+        }, {}>;
+        createdAt: import("drizzle-orm/sqlite-core").SQLiteColumn<{
+            name: string;
+            tableName: "brain_retrieval_log";
+            dataType: "string";
+            data: string;
+            driverParam: string;
+            notNull: true;
+            hasDefault: true;
+            isPrimaryKey: false;
+            isAutoincrement: false;
+            hasRuntimeDefault: false;
+            enumValues: [string, ...string[]];
+            baseColumn: never;
+            identity: undefined;
+            generated: undefined;
+        }, {}>;
+    };
+    dialect: "sqlite";
+}>;
+export type BrainRetrievalLogRow = typeof brainRetrievalLog.$inferSelect;
+export type NewBrainRetrievalLogRow = typeof brainRetrievalLog.$inferInsert;
 export type BrainDecisionRow = typeof brainDecisions.$inferSelect;
 export type NewBrainDecisionRow = typeof brainDecisions.$inferInsert;
 export type BrainPatternRow = typeof brainPatterns.$inferSelect;

package/dist/store/brain-schema.d.ts.map

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package/dist/store/brain-schema.js

@@ -545,5 +545,35 @@ export const brainPageEdges = sqliteTable('brain_page_edges', {
     index('idx_brain_edges_to').on(table.toId),
     index('idx_brain_edges_type').on(table.edgeType),
 ]);
+// ============================================================================
+// RETRIEVAL LOG — tracks which entries are retrieved together (T549 §6)
+// ============================================================================
+/**
+ * Retrieval log tracks which brain entries are returned together in search
+ * results. This data drives:
+ *   - Co-retrieval edge strengthening (consolidation step 6)
+ *   - Memory quality instrumentation (retrieval frequency tracking)
+ *   - Citation count validation (corroboration for tier promotion)
+ *
+ * Each row records one retrieval event: the query, which entries were returned,
+ * and the retrieval source (find/fetch/hybrid).
+ */
+export const brainRetrievalLog = sqliteTable('brain_retrieval_log', {
+    id: integer('id').primaryKey({ autoIncrement: true }),
+    /** The search query or fetch IDs that triggered this retrieval. */
+    query: text('query').notNull(),
+    /** Comma-separated list of entry IDs returned in this retrieval. */
+    entryIds: text('entry_ids').notNull(),
+    /** Number of entries returned. */
+    entryCount: integer('entry_count').notNull(),
+    /** Retrieval source: 'find' | 'fetch' | 'hybrid' | 'timeline' | 'budget' */
+    source: text('source').notNull(),
+    /** Estimated tokens consumed by this retrieval. */
+    tokensUsed: integer('tokens_used'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+}, (table) => [
+    index('idx_retrieval_log_created').on(table.createdAt),
+    index('idx_retrieval_log_source').on(table.source),
+]);
 // BrainNodeType and BrainEdgeType are declared alongside their enum arrays above.
 //# sourceMappingURL=brain-schema.js.map

package/dist/store/brain-schema.js.map

@@ -1 +1 @@
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package/dist/store/brain-sqlite.js

@@ -15,7 +15,7 @@ import { fileURLToPath } from 'node:url';
 import { drizzle } from 'drizzle-orm/node-sqlite';
 import { getCleoDirAbsolute } from '../paths.js';
 import * as brainSchema from './brain-schema.js';
-import { createSafetyBackup, migrateWithRetry, reconcileJournal, tableExists, } from './migration-manager.js';
+import { createSafetyBackup, ensureColumns, migrateWithRetry, reconcileJournal, tableExists, } from './migration-manager.js';
 import { openNativeDatabase } from './sqlite.js';
 const _require = createRequire(import.meta.url);
 /** Database file name within .cleo/ directory. */
@@ -72,6 +72,46 @@ function runBrainMigrations(nativeDb, db) {
     // Pass nativeDb + existenceTable so migrateWithRetry can auto-reconcile any
     // partial migration (Scenario 3) that slips through the proactive check above.
     migrateWithRetry(db, migrationsFolder, nativeDb, 'brain_decisions', 'brain');
+    // Safety net: ensure all columns from T528/T531/T549 exist even if the
+    // migration files were never committed to git or the journal was not updated.
+    // ensureColumns uses PRAGMA table_info + ALTER TABLE ADD COLUMN — idempotent.
+    // T528: graph schema expansion — quality scoring, content hashing, last-activity.
+    // Note: last_activity_at uses nullable text (no non-constant default) because
+    // ALTER TABLE ADD COLUMN with datetime('now') default fails on non-empty tables.
+    ensureColumns(nativeDb, 'brain_page_nodes', [
+        { name: 'quality_score', ddl: 'real DEFAULT 0.5' },
+        { name: 'content_hash', ddl: 'text' },
+        { name: 'last_activity_at', ddl: 'text' },
+        { name: 'updated_at', ddl: 'text' },
+    ], 'brain');
+    // T531: quality score on typed brain tables
+    for (const table of [
+        'brain_decisions',
+        'brain_patterns',
+        'brain_learnings',
+        'brain_observations',
+    ]) {
+        ensureColumns(nativeDb, table, [{ name: 'quality_score', ddl: 'real' }], 'brain');
+    }
+    // T549: tiered + typed memory architecture
+    for (const table of [
+        'brain_decisions',
+        'brain_patterns',
+        'brain_learnings',
+        'brain_observations',
+    ]) {
+        ensureColumns(nativeDb, table, [
+            { name: 'memory_tier', ddl: "text DEFAULT 'short'" },
+            { name: 'memory_type', ddl: "text DEFAULT 'episodic'" },
+            { name: 'verified', ddl: 'integer NOT NULL DEFAULT 0' },
+            // valid_at uses nullable text (no datetime('now') default) because
+            // ALTER TABLE ADD COLUMN with non-constant defaults fails on non-empty tables.
+            { name: 'valid_at', ddl: 'text' },
+            { name: 'invalid_at', ddl: 'text' },
+            { name: 'source_confidence', ddl: "text DEFAULT 'agent'" },
+            { name: 'citation_count', ddl: 'integer NOT NULL DEFAULT 0' },
+        ], 'brain');
+    }
 }
 /**
  * Load the sqlite-vec extension into a native DatabaseSync instance.

package/dist/store/brain-sqlite.js.map

@@ -1 +1 @@
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@@ -1 +1 @@
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+{"version":3,"file":"complete.d.ts","sourceRoot":"","sources":["../../src/tasks/complete.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,IAAI,EAAE,OAAO,EAAoB,MAAM,qBAAqB,CAAC;AAM3E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAI9D,qCAAqC;AACrC,MAAM,WAAW,mBAAmB;IAClC,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,mCAAmC;AACnC,MAAM,WAAW,kBAAkB;IACjC,IAAI,EAAE,IAAI,CAAC;IACX,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC;IACzB,cAAc,CAAC,EAAE,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC;CACvD;AAiED;;;;GAIG;AACH,wBAAsB,YAAY,CAChC,OAAO,EAAE,mBAAmB,EAC5B,GAAG,CAAC,EAAE,MAAM,EACZ,QAAQ,CAAC,EAAE,YAAY,GACtB,OAAO,CAAC,kBAAkB,CAAC,CA+O7B"}

package/dist/tasks/complete.js

@@ -199,15 +199,14 @@ export async function completeTask(options, cwd, accessor) {
     }
     // NOTE: Memory bridge refresh is now handled by the onToolComplete hook
     // via memory-bridge-refresh.ts (T138). No direct call needed here.
-    // Auto-extract memory from task completion (best-effort, T-audit)
-    import('../memory/auto-extract.js')
-        .then(({ extractTaskCompletionMemory }) => extractTaskCompletionMemory(cwd ?? process.cwd(), task))
-        .catch(() => {
-        /* Memory extraction is best-effort */
-    });
+    // Task-completion memory is intentionally NOT written here.
+    // The legacy extractTaskCompletionMemory function was removed (produced
+    // O(tasks x labels) noise — see T523 CA1 spec). Durable knowledge is now
+    // extracted from session transcripts at session end via the LLM extraction
+    // gate in memory/llm-extraction.ts.
     // Auto-populate brain graph nodes for the completed task (best-effort, T537).
-    // Runs SEPARATE from the gutted extractTaskCompletionMemory — this only writes
-    // graph topology, not memory table rows.
+    // Graph topology is still written here — only the noise-producing memory
+    // row writes were removed.
     import('../memory/graph-auto-populate.js')
         .then(({ upsertGraphNode, addGraphEdge }) => (async () => {
         const projectRoot = cwd ?? process.cwd();

package/dist/tasks/complete.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cleocode/core",
-  "version": "2026.4.35",
+  "version": "2026.4.37",
   "description": "CLEO core business logic kernel — tasks, sessions, memory, orchestration, lifecycle, with bundled SQLite store",
   "type": "module",
   "main": "./dist/index.js",
@@ -23,6 +23,7 @@
     }
   },
   "dependencies": {
+    "@anthropic-ai/sdk": "^0.88.0",
     "@huggingface/transformers": "^4.0.1",
     "ajv": "^8.18.0",
     "ajv-formats": "^3.0.1",
@@ -34,26 +35,26 @@
     "proper-lockfile": "^4.1.2",
     "sqlite-vec": "^0.1.9",
     "tar": "^7.4.3",
-    "tree-sitter": "^0.22.1",
-    "tree-sitter-c": "^0.23.2",
+    "tree-sitter": "0.21.1",
+    "tree-sitter-c": "0.23.2",
     "tree-sitter-cpp": "^0.23.4",
     "tree-sitter-go": "^0.23.0",
     "tree-sitter-java": "^0.23.5",
     "tree-sitter-javascript": "^0.23.0",
-    "tree-sitter-python": "^0.23.4",
+    "tree-sitter-python": "0.23.4",
     "tree-sitter-ruby": "^0.23.1",
-    "tree-sitter-rust": "^0.23.1",
+    "tree-sitter-rust": "0.23.1",
     "tree-sitter-typescript": "^0.23.2",
     "write-file-atomic": "^7.0.1",
     "yaml": "^2.8.3",
     "zod": "^4.3.6",
-    "@cleocode/adapters": "2026.4.35",
-    "@cleocode/agents": "2026.4.35",
-    "@cleocode/caamp": "2026.4.35",
-    "@cleocode/contracts": "2026.4.35",
-    "@cleocode/lafs": "2026.4.35",
-    "@cleocode/nexus": "2026.4.35",
-    "@cleocode/skills": "2026.4.35"
+    "@cleocode/adapters": "2026.4.37",
+    "@cleocode/agents": "2026.4.36",
+    "@cleocode/contracts": "2026.4.37",
+    "@cleocode/caamp": "2026.4.37",
+    "@cleocode/lafs": "2026.4.37",
+    "@cleocode/nexus": "2026.4.37",
+    "@cleocode/skills": "2026.4.36"
   },
   "engines": {
     "node": ">=24.0.0"

package/src/config.ts

@@ -95,6 +95,13 @@ const DEFAULTS: CleoConfig = {
     summarization: {
       enabled: true,
     },
+    llmExtraction: {
+      enabled: true,
+      model: 'claude-haiku-4-5-20251001',
+      minImportance: 0.6,
+      maxExtractions: 7,
+      maxTranscriptChars: 60000,
+    },
   },
 };