@cleocode/core 2026.4.31 → 2026.4.36

package/dist/store/import-remap.js

@@ -0,0 +1,145 @@
+/**
+ * ID remapping logic for import system.
+ * Ported from lib/data/import-remap.sh
+ *
+ * @epic T4454
+ * @task T4530
+ */
+/**
+ * Get the next available task ID number from existing tasks.
+ */
+export function getNextAvailableId(tasks) {
+    if (tasks.length === 0)
+        return 1;
+    const maxId = tasks.reduce((max, t) => {
+        const num = parseInt(t.id.replace('T', ''), 10);
+        return Number.isNaN(num) ? max : Math.max(max, num);
+    }, 0);
+    return maxId + 1;
+}
+/**
+ * Generate a remap table for importing tasks.
+ * Maps source task IDs to new sequential IDs starting from nextAvailable.
+ */
+export function generateRemapTable(sourceTaskIds, existingTasks) {
+    const forward = new Map();
+    const reverse = new Map();
+    let nextId = getNextAvailableId(existingTasks);
+    for (const sourceId of sourceTaskIds) {
+        const newId = `T${String(nextId).padStart(3, '0')}`;
+        forward.set(sourceId, newId);
+        reverse.set(newId, sourceId);
+        nextId++;
+    }
+    return { forward, reverse };
+}
+/**
+ * Validate that a remap table is complete and consistent.
+ */
+export function validateRemapTable(table, expectedSourceIds) {
+    const errors = [];
+    // Check completeness
+    for (const id of expectedSourceIds) {
+        if (!table.forward.has(id)) {
+            errors.push(`Missing mapping for source ID: ${id}`);
+        }
+    }
+    // Check consistency
+    for (const [source, target] of table.forward) {
+        const reverseSource = table.reverse.get(target);
+        if (reverseSource !== source) {
+            errors.push(`Inconsistent mapping: ${source} -> ${target} -> ${reverseSource}`);
+        }
+    }
+    // Check ID format
+    for (const newId of table.reverse.keys()) {
+        if (!/^T\d{3,}$/.test(newId)) {
+            errors.push(`Invalid new task ID format: ${newId}`);
+        }
+    }
+    return { valid: errors.length === 0, errors };
+}
+/**
+ * Remap a single task ID, returning original if not in table.
+ */
+export function remapTaskId(taskId, table) {
+    if (!taskId)
+        return null;
+    return table.forward.get(taskId) ?? taskId;
+}
+/**
+ * Remap all ID references in a task.
+ */
+export function remapTaskReferences(task, table, existingTaskIds, missingDepStrategy = 'strip') {
+    const newId = table.forward.get(task.id);
+    if (!newId)
+        throw new Error(`No mapping for task ${task.id}`);
+    // Remap parent
+    let newParentId;
+    if (task.parentId) {
+        if (table.forward.has(task.parentId)) {
+            newParentId = table.forward.get(task.parentId);
+        }
+        else if (existingTaskIds.has(task.parentId)) {
+            newParentId = task.parentId;
+        }
+        else {
+            newParentId = null; // Orphan
+        }
+    }
+    // Remap dependencies
+    let newDepends;
+    if (task.depends?.length) {
+        newDepends = [];
+        for (const dep of task.depends) {
+            if (table.forward.has(dep)) {
+                newDepends.push(table.forward.get(dep));
+            }
+            else if (existingTaskIds.has(dep)) {
+                newDepends.push(dep);
+            }
+            else if (missingDepStrategy === 'fail') {
+                throw new Error(`Missing dependency ${dep} for task ${task.id}`);
+            }
+            // 'strip' strategy: just skip missing deps
+        }
+    }
+    return {
+        ...task,
+        id: newId,
+        ...(newParentId !== undefined ? { parentId: newParentId } : {}),
+        ...(newDepends !== undefined ? { depends: newDepends } : {}),
+    };
+}
+/**
+ * Detect duplicate titles between import and target.
+ */
+export function detectDuplicateTitles(importTasks, existingTasks) {
+    const titleMap = new Map();
+    for (const t of existingTasks) {
+        titleMap.set(t.title.toLowerCase(), t.id);
+    }
+    const conflicts = [];
+    for (const t of importTasks) {
+        const existing = titleMap.get(t.title.toLowerCase());
+        if (existing) {
+            conflicts.push({ sourceId: t.id, title: t.title, existingId: existing });
+        }
+    }
+    return conflicts;
+}
+/**
+ * Resolve duplicate title by appending suffix.
+ */
+export function resolveDuplicateTitle(title, existingTitles) {
+    let candidate = `${title} (imported)`;
+    if (!existingTitles.has(candidate.toLowerCase()))
+        return candidate;
+    for (let i = 2; i <= 1000; i++) {
+        candidate = `${title} (imported-${i})`;
+        if (!existingTitles.has(candidate.toLowerCase()))
+            return candidate;
+    }
+    return candidate;
+}
+//# sourceMappingURL=import-remap.js.map

package/dist/store/import-remap.js.map

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package/dist/store/import-sort.js

@@ -0,0 +1,121 @@
+/**
+ * Topological sort for import order using Kahn's algorithm.
+ * Ported from lib/data/import-sort.sh
+ *
+ * Ensures tasks are imported in dependency order where:
+ * 1. Parents are imported before children (parentId references)
+ * 2. Dependencies are imported before dependents (depends[] references)
+ *
+ * @task T4552
+ * @epic T4545
+ */
+import { ExitCode } from '@cleocode/contracts';
+import { CleoError } from '../errors.js';
+/**
+ * Topological sort for task import order using Kahn's algorithm.
+ *
+ * Ensures tasks are imported in dependency order:
+ * - Parents before children (parentId references)
+ * - Dependencies before dependents (depends[] references)
+ * - Only counts edges to tasks within the set (external deps ignored)
+ *
+ * @task T4552
+ */
+export function topologicalSortTasks(tasks) {
+    if (tasks.length === 0)
+        return [];
+    // Build lookup from id to index
+    const idToIndex = new Map();
+    for (let i = 0; i < tasks.length; i++) {
+        idToIndex.set(tasks[i].id, i);
+    }
+    // Initialize graph nodes
+    const nodes = tasks.map((task) => {
+        // Count in-degree: edges from parentId + depends that are within the set
+        let inDegree = 0;
+        if (task.parentId && idToIndex.has(task.parentId)) {
+            inDegree++;
+        }
+        const deps = task.depends ?? [];
+        for (const dep of deps) {
+            if (idToIndex.has(dep)) {
+                inDegree++;
+            }
+        }
+        return {
+            id: task.id,
+            inDegree,
+            children: [],
+            dependents: [],
+        };
+    });
+    // Build reverse edges (parent -> children, dep -> dependents)
+    for (const task of tasks) {
+        // Add to parent's children list
+        if (task.parentId) {
+            const parentIdx = idToIndex.get(task.parentId);
+            if (parentIdx !== undefined) {
+                nodes[parentIdx].children.push(task.id);
+            }
+        }
+        // Add to each dep's dependents list
+        const deps = task.depends ?? [];
+        for (const dep of deps) {
+            const depIdx = idToIndex.get(dep);
+            if (depIdx !== undefined) {
+                nodes[depIdx].dependents.push(task.id);
+            }
+        }
+    }
+    // Build node lookup by ID for efficient access
+    const nodeById = new Map();
+    for (const node of nodes) {
+        nodeById.set(node.id, node);
+    }
+    // Kahn's algorithm: initialize queue with zero in-degree nodes
+    const queue = [];
+    for (const node of nodes) {
+        if (node.inDegree === 0) {
+            queue.push(node.id);
+        }
+    }
+    const result = [];
+    while (queue.length > 0) {
+        const current = queue.shift();
+        result.push(current);
+        const currentNode = nodeById.get(current);
+        // Process all successors (children + dependents)
+        const successors = [...currentNode.children, ...currentNode.dependents];
+        for (const successorId of successors) {
+            const successor = nodeById.get(successorId);
+            if (!successor)
+                continue;
+            successor.inDegree--;
+            if (successor.inDegree === 0) {
+                queue.push(successorId);
+            }
+        }
+    }
+    // Cycle detection
+    if (result.length !== tasks.length) {
+        const processed = new Set(result);
+        const unprocessed = tasks.map((t) => t.id).filter((id) => !processed.has(id));
+        throw new CleoError(ExitCode.VALIDATION_ERROR, `Cycle detected in task dependencies. Tasks in cycle: ${unprocessed.join(', ')}`);
+    }
+    return result;
+}
+/**
+ * Detect cycles in task dependency graph.
+ * Returns true if no cycles, false if cycles detected.
+ * @task T4552
+ */
+export function detectCycles(tasks) {
+    try {
+        topologicalSortTasks(tasks);
+        return true; // No cycles
+    }
+    catch {
+        return false; // Cycles detected
+    }
+}
+//# sourceMappingURL=import-sort.js.map

package/dist/store/import-sort.js.map

@@ -0,0 +1 @@
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package/dist/store/index.js

@@ -0,0 +1,29 @@
+/**
+ * Unified store interface for CLEO V2 data access.
+ * @epic T4454
+ * @task T4457
+ * @task T4645
+ * @task T4745
+ */
+export { atomicWrite, atomicWriteJson, safeReadFile } from './atomic.js';
+export { createBackup, listBackups, restoreFromBackup } from './backup.js';
+export { forceCheckpointBeforeOperation } from './data-safety.js';
+export { DataSafetyError, disableSafety, enableSafety, forceSafetyCheckpoint, getSafetyStats, resetSafetyStats, runDataIntegrityCheck, } from './data-safety-central.js';
+export { appendJsonl, computeChecksum, readJson, readJsonRequired, saveJson, } from './json.js';
+export { acquireLock, isLocked, withLock } from './lock.js';
+export { createStoreProvider } from './provider.js';
+// Safety-enabled DataAccessor exports (@task T4745)
+export { getSafetyStatus, isSafetyEnabled, SafetyDataAccessor, wrapWithSafety, } from './safety-data-accessor.js';
+export { listBrainBackups, listSqliteBackups, listSqliteBackupsAll, vacuumIntoBackup, vacuumIntoBackupAll, } from './sqlite-backup.js';
+/**
+ * Get a StoreProvider instance for the given working directory.
+ * Convenience wrapper around createStoreProvider with auto-detection.
+ *
+ * @task T4645
+ * @epic T4638
+ */
+export async function getStore(cwd) {
+    const { createStoreProvider: create } = await import('./provider.js');
+    return create(undefined, cwd);
+}
+//# sourceMappingURL=index.js.map

package/dist/store/index.js.map

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package/dist/store/json.js

@@ -0,0 +1,208 @@
+/**
+ * JSON read/write with schema validation, locking, and backup.
+ * This is the primary data access layer for CLEO data files.
+ * @epic T4454
+ * @task T4457
+ */
+import { createHash } from 'node:crypto';
+import { ExitCode } from '@cleocode/contracts';
+import { CleoError } from '../errors.js';
+import { atomicWrite, atomicWriteJson, safeReadFile } from './atomic.js';
+import { createBackup } from './backup.js';
+import { withLock } from './lock.js';
+/**
+ * Read and parse a JSON file.
+ * Returns null if the file does not exist.
+ */
+export async function readJson(filePath) {
+    const content = await safeReadFile(filePath);
+    if (content === null)
+        return null;
+    try {
+        return JSON.parse(content);
+    }
+    catch (err) {
+        throw new CleoError(ExitCode.VALIDATION_ERROR, `Invalid JSON in: ${filePath}`, { cause: err });
+    }
+}
+/**
+ * Read a JSON file, throwing if it doesn't exist.
+ */
+export async function readJsonRequired(filePath) {
+    const data = await readJson(filePath);
+    if (data === null) {
+        throw new CleoError(ExitCode.NOT_FOUND, `Required file not found: ${filePath}`);
+    }
+    return data;
+}
+/**
+ * Compute a truncated SHA-256 checksum of a value.
+ * Used for integrity verification (matches Bash CLI's 16-char hex format).
+ */
+export function computeChecksum(data) {
+    const json = JSON.stringify(data);
+    const hash = createHash('sha256').update(json).digest('hex');
+    return hash.substring(0, 16);
+}
+/**
+ * Save JSON data with optional locking, backup, and validation.
+ * Follows the CLEO atomic write pattern:
+ *   1. Acquire lock
+ *   2. Validate data
+ *   3. Create backup of existing file
+ *   4. Atomic write (temp file -> rename)
+ *   5. Release lock
+ */
+export async function saveJson(filePath, data, options) {
+    await withLock(filePath, async () => {
+        // Validate before write
+        if (options?.validate) {
+            try {
+                await options.validate(data);
+            }
+            catch (err) {
+                throw new CleoError(ExitCode.VALIDATION_ERROR, `Validation failed before write: ${filePath}`, { cause: err });
+            }
+        }
+        // Create backup if configured
+        if (options?.backupDir) {
+            try {
+                await createBackup(filePath, options.backupDir, options.maxBackups);
+            }
+            catch {
+                // Backup failure is non-fatal for first write (file may not exist yet)
+            }
+        }
+        // Atomic write
+        await atomicWriteJson(filePath, data, { indent: options?.indent });
+        // Dispatch Notification hook (best-effort, fire-and-forget)
+        import('../hooks/registry.js')
+            .then(({ hooks: h }) => h.dispatch('Notification', process.cwd(), {
+            timestamp: new Date().toISOString(),
+            filePath,
+            changeType: 'write',
+        }))
+            .catch(() => {
+            /* hook errors are non-fatal */
+        });
+    });
+}
+/**
+ * Append a line to a JSONL file atomically.
+ * Used for manifest entries and audit logs.
+ */
+export async function appendJsonl(filePath, entry) {
+    const existing = await safeReadFile(filePath);
+    const line = JSON.stringify(entry);
+    const content = existing ? existing.trimEnd() + '\n' + line + '\n' : line + '\n';
+    await atomicWrite(filePath, content);
+}
+/**
+ * Read log entries from a hybrid JSON/JSONL file.
+ * Handles three formats:
+ *   1. Pure JSON: `{ "entries": [...] }` (legacy bash format)
+ *   2. Pure JSONL: one JSON object per line (new TS format)
+ *   3. Hybrid: JSON object followed by JSONL lines (migration state)
+ * Returns a flat array of all entries found.
+ * @task T4622
+ */
+export async function readLogEntries(filePath) {
+    const content = await safeReadFile(filePath);
+    if (content === null)
+        return [];
+    const trimmed = content.trim();
+    if (!trimmed)
+        return [];
+    // Fast path: try parsing as a single JSON object
+    try {
+        const parsed = JSON.parse(trimmed);
+        if (Array.isArray(parsed))
+            return parsed;
+        if (parsed && typeof parsed === 'object' && Array.isArray(parsed.entries)) {
+            return parsed.entries;
+        }
+        // Single object, wrap in array
+        return [parsed];
+    }
+    catch {
+        // Not valid JSON - handle hybrid format
+    }
+    // Hybrid format: find where the initial JSON object ends, then parse JSONL after it
+    const entries = [];
+    if (trimmed.startsWith('{')) {
+        // Find the matching closing brace for the initial JSON object
+        let depth = 0;
+        let inString = false;
+        let escaped = false;
+        let jsonEnd = -1;
+        for (let i = 0; i < trimmed.length; i++) {
+            const ch = trimmed[i];
+            if (escaped) {
+                escaped = false;
+                continue;
+            }
+            if (ch === '\\' && inString) {
+                escaped = true;
+                continue;
+            }
+            if (ch === '"') {
+                inString = !inString;
+                continue;
+            }
+            if (inString)
+                continue;
+            if (ch === '{')
+                depth++;
+            else if (ch === '}') {
+                depth--;
+                if (depth === 0) {
+                    jsonEnd = i + 1;
+                    break;
+                }
+            }
+        }
+        if (jsonEnd > 0) {
+            // Parse the initial JSON object
+            try {
+                const initialJson = JSON.parse(trimmed.substring(0, jsonEnd));
+                if (initialJson && Array.isArray(initialJson.entries)) {
+                    entries.push(...initialJson.entries);
+                }
+            }
+            catch {
+                // Corrupted initial JSON - skip it
+            }
+            // Parse remaining lines as JSONL
+            const remainder = trimmed.substring(jsonEnd).trim();
+            if (remainder) {
+                for (const line of remainder.split('\n')) {
+                    const l = line.trim();
+                    if (!l || !l.startsWith('{'))
+                        continue;
+                    try {
+                        entries.push(JSON.parse(l));
+                    }
+                    catch {
+                        // Skip unparseable lines
+                    }
+                }
+            }
+        }
+    }
+    else {
+        // Pure JSONL (no initial JSON object)
+        for (const line of trimmed.split('\n')) {
+            const l = line.trim();
+            if (!l || !l.startsWith('{'))
+                continue;
+            try {
+                entries.push(JSON.parse(l));
+            }
+            catch {
+                // Skip unparseable lines
+            }
+        }
+    }
+    return entries;
+}
+//# sourceMappingURL=json.js.map

package/dist/store/json.js.map

@@ -0,0 +1 @@
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