@cleocode/core 2026.4.31 → 2026.4.35

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (985) hide show
  1. package/dist/adapters/adapter-registry.js +64 -0
  2. package/dist/adapters/adapter-registry.js.map +1 -0
  3. package/dist/adapters/discovery.js +83 -0
  4. package/dist/adapters/discovery.js.map +1 -0
  5. package/dist/adapters/index.js +9 -0
  6. package/dist/adapters/index.js.map +1 -0
  7. package/dist/adapters/manager.js +260 -0
  8. package/dist/adapters/manager.js.map +1 -0
  9. package/dist/admin/export-tasks.js +171 -0
  10. package/dist/admin/export-tasks.js.map +1 -0
  11. package/dist/admin/export.js +103 -0
  12. package/dist/admin/export.js.map +1 -0
  13. package/dist/admin/help.js +106 -0
  14. package/dist/admin/help.js.map +1 -0
  15. package/dist/admin/import-tasks.js +182 -0
  16. package/dist/admin/import-tasks.js.map +1 -0
  17. package/dist/admin/import.js +129 -0
  18. package/dist/admin/import.js.map +1 -0
  19. package/dist/admin/index.js +13 -0
  20. package/dist/admin/index.js.map +1 -0
  21. package/dist/adrs/find.js +134 -0
  22. package/dist/adrs/find.js.map +1 -0
  23. package/dist/adrs/index.js +15 -0
  24. package/dist/adrs/index.js.map +1 -0
  25. package/dist/adrs/link-pipeline.js +160 -0
  26. package/dist/adrs/link-pipeline.js.map +1 -0
  27. package/dist/adrs/list.js +43 -0
  28. package/dist/adrs/list.js.map +1 -0
  29. package/dist/adrs/parse.js +51 -0
  30. package/dist/adrs/parse.js.map +1 -0
  31. package/dist/adrs/show.js +22 -0
  32. package/dist/adrs/show.js.map +1 -0
  33. package/dist/adrs/sync.js +232 -0
  34. package/dist/adrs/sync.js.map +1 -0
  35. package/dist/adrs/types.js +9 -0
  36. package/dist/adrs/types.js.map +1 -0
  37. package/dist/adrs/validate.js +57 -0
  38. package/dist/adrs/validate.js.map +1 -0
  39. package/dist/agents/agent-registry.js +288 -0
  40. package/dist/agents/agent-registry.js.map +1 -0
  41. package/dist/agents/agent-schema.js +82 -0
  42. package/dist/agents/agent-schema.js.map +1 -0
  43. package/dist/agents/capacity.js +116 -0
  44. package/dist/agents/capacity.js.map +1 -0
  45. package/dist/agents/execution-learning.js +474 -0
  46. package/dist/agents/execution-learning.js.map +1 -0
  47. package/dist/agents/health-monitor.js +217 -0
  48. package/dist/agents/health-monitor.js.map +1 -0
  49. package/dist/agents/index.js +29 -0
  50. package/dist/agents/index.js.map +1 -0
  51. package/dist/agents/registry.js +314 -0
  52. package/dist/agents/registry.js.map +1 -0
  53. package/dist/agents/retry.js +215 -0
  54. package/dist/agents/retry.js.map +1 -0
  55. package/dist/audit-prune.js +94 -0
  56. package/dist/audit-prune.js.map +1 -0
  57. package/dist/audit.js +68 -0
  58. package/dist/audit.js.map +1 -0
  59. package/dist/backfill/index.js +229 -0
  60. package/dist/backfill/index.js.map +1 -0
  61. package/dist/bootstrap.js +435 -0
  62. package/dist/bootstrap.js.map +1 -0
  63. package/dist/caamp/adapter.js +259 -0
  64. package/dist/caamp/adapter.js.map +1 -0
  65. package/dist/caamp/capability-check.js +38 -0
  66. package/dist/caamp/capability-check.js.map +1 -0
  67. package/dist/caamp/index.js +21 -0
  68. package/dist/caamp/index.js.map +1 -0
  69. package/dist/caamp-init.js +16 -0
  70. package/dist/caamp-init.js.map +1 -0
  71. package/dist/cleo.js +322 -0
  72. package/dist/cleo.js.map +1 -0
  73. package/dist/code/index.js +14 -0
  74. package/dist/code/index.js.map +1 -0
  75. package/dist/code/outline.js +165 -0
  76. package/dist/code/outline.js.map +1 -0
  77. package/dist/code/parser.js +420 -0
  78. package/dist/code/parser.js.map +1 -0
  79. package/dist/code/search.js +135 -0
  80. package/dist/code/search.js.map +1 -0
  81. package/dist/code/unfold.js +155 -0
  82. package/dist/code/unfold.js.map +1 -0
  83. package/dist/codebase-map/analyzers/architecture.js +129 -0
  84. package/dist/codebase-map/analyzers/architecture.js.map +1 -0
  85. package/dist/codebase-map/analyzers/concerns.js +122 -0
  86. package/dist/codebase-map/analyzers/concerns.js.map +1 -0
  87. package/dist/codebase-map/analyzers/conventions.js +149 -0
  88. package/dist/codebase-map/analyzers/conventions.js.map +1 -0
  89. package/dist/codebase-map/analyzers/integrations.js +108 -0
  90. package/dist/codebase-map/analyzers/integrations.js.map +1 -0
  91. package/dist/codebase-map/analyzers/stack.js +117 -0
  92. package/dist/codebase-map/analyzers/stack.js.map +1 -0
  93. package/dist/codebase-map/analyzers/structure.js +137 -0
  94. package/dist/codebase-map/analyzers/structure.js.map +1 -0
  95. package/dist/codebase-map/analyzers/testing.js +118 -0
  96. package/dist/codebase-map/analyzers/testing.js.map +1 -0
  97. package/dist/codebase-map/index.js +57 -0
  98. package/dist/codebase-map/index.js.map +1 -0
  99. package/dist/codebase-map/store.js +122 -0
  100. package/dist/codebase-map/store.js.map +1 -0
  101. package/dist/codebase-map/summary.js +152 -0
  102. package/dist/codebase-map/summary.js.map +1 -0
  103. package/dist/compliance/index.js +288 -0
  104. package/dist/compliance/index.js.map +1 -0
  105. package/dist/compliance/protocol-enforcement.js +332 -0
  106. package/dist/compliance/protocol-enforcement.js.map +1 -0
  107. package/dist/compliance/protocol-rules.js +786 -0
  108. package/dist/compliance/protocol-rules.js.map +1 -0
  109. package/dist/compliance/protocol-types.js +79 -0
  110. package/dist/compliance/protocol-types.js.map +1 -0
  111. package/dist/compliance/store.js +53 -0
  112. package/dist/compliance/store.js.map +1 -0
  113. package/dist/conduit/conduit-client.js +107 -0
  114. package/dist/conduit/conduit-client.js.map +1 -0
  115. package/dist/conduit/factory.js +52 -0
  116. package/dist/conduit/factory.js.map +1 -0
  117. package/dist/conduit/http-transport.js +155 -0
  118. package/dist/conduit/http-transport.js.map +1 -0
  119. package/dist/conduit/index.js +15 -0
  120. package/dist/conduit/index.js.map +1 -0
  121. package/dist/conduit/local-transport.js +255 -0
  122. package/dist/conduit/local-transport.js.map +1 -0
  123. package/dist/conduit/sse-transport.js +299 -0
  124. package/dist/conduit/sse-transport.js.map +1 -0
  125. package/dist/config/build-config.js +29 -0
  126. package/dist/config/build-config.js.map +1 -0
  127. package/dist/config.js +400 -0
  128. package/dist/config.js.map +1 -0
  129. package/dist/constants.js +18 -0
  130. package/dist/constants.js.map +1 -0
  131. package/dist/context/index.js +137 -0
  132. package/dist/context/index.js.map +1 -0
  133. package/dist/crypto/credentials.js +219 -0
  134. package/dist/crypto/credentials.js.map +1 -0
  135. package/dist/discovery.js +182 -0
  136. package/dist/discovery.js.map +1 -0
  137. package/dist/engine-result.js +12 -0
  138. package/dist/engine-result.js.map +1 -0
  139. package/dist/error-catalog.js +404 -0
  140. package/dist/error-catalog.js.map +1 -0
  141. package/dist/error-registry.js +393 -0
  142. package/dist/error-registry.js.map +1 -0
  143. package/dist/errors.js +173 -0
  144. package/dist/errors.js.map +1 -0
  145. package/dist/hooks/handlers/agent-hooks.js +106 -0
  146. package/dist/hooks/handlers/agent-hooks.js.map +1 -0
  147. package/dist/hooks/handlers/context-hooks.js +111 -0
  148. package/dist/hooks/handlers/context-hooks.js.map +1 -0
  149. package/dist/hooks/handlers/error-hooks.js +52 -0
  150. package/dist/hooks/handlers/error-hooks.js.map +1 -0
  151. package/dist/hooks/handlers/file-hooks.js +104 -0
  152. package/dist/hooks/handlers/file-hooks.js.map +1 -0
  153. package/dist/hooks/handlers/handler-helpers.js +61 -0
  154. package/dist/hooks/handlers/handler-helpers.js.map +1 -0
  155. package/dist/hooks/handlers/index.d.ts +4 -0
  156. package/dist/hooks/handlers/index.d.ts.map +1 -1
  157. package/dist/hooks/handlers/index.js +34 -0
  158. package/dist/hooks/handlers/index.js.map +1 -0
  159. package/dist/hooks/handlers/intelligence-hooks.d.ts +26 -0
  160. package/dist/hooks/handlers/intelligence-hooks.d.ts.map +1 -0
  161. package/dist/hooks/handlers/intelligence-hooks.js +69 -0
  162. package/dist/hooks/handlers/intelligence-hooks.js.map +1 -0
  163. package/dist/hooks/handlers/memory-bridge-refresh.js +42 -0
  164. package/dist/hooks/handlers/memory-bridge-refresh.js.map +1 -0
  165. package/dist/hooks/handlers/notification-hooks.js +62 -0
  166. package/dist/hooks/handlers/notification-hooks.js.map +1 -0
  167. package/dist/hooks/handlers/session-hooks.d.ts +16 -0
  168. package/dist/hooks/handlers/session-hooks.d.ts.map +1 -1
  169. package/dist/hooks/handlers/session-hooks.js +157 -0
  170. package/dist/hooks/handlers/session-hooks.js.map +1 -0
  171. package/dist/hooks/handlers/task-hooks.js +65 -0
  172. package/dist/hooks/handlers/task-hooks.js.map +1 -0
  173. package/dist/hooks/handlers/watchdog-hooks.d.ts +49 -0
  174. package/dist/hooks/handlers/watchdog-hooks.d.ts.map +1 -0
  175. package/dist/hooks/handlers/watchdog-hooks.js +162 -0
  176. package/dist/hooks/handlers/watchdog-hooks.js.map +1 -0
  177. package/dist/hooks/handlers/work-capture-hooks.js +165 -0
  178. package/dist/hooks/handlers/work-capture-hooks.js.map +1 -0
  179. package/dist/hooks/index.js +13 -0
  180. package/dist/hooks/index.js.map +1 -0
  181. package/dist/hooks/payload-schemas.js +220 -0
  182. package/dist/hooks/payload-schemas.js.map +1 -0
  183. package/dist/hooks/provider-hooks.js +66 -0
  184. package/dist/hooks/provider-hooks.js.map +1 -0
  185. package/dist/hooks/registry.js +229 -0
  186. package/dist/hooks/registry.js.map +1 -0
  187. package/dist/hooks/types.js +66 -0
  188. package/dist/hooks/types.js.map +1 -0
  189. package/dist/hooks.js +136 -0
  190. package/dist/hooks.js.map +1 -0
  191. package/dist/index.js +3828 -2167
  192. package/dist/index.js.map +4 -4
  193. package/dist/init.js +920 -0
  194. package/dist/init.js.map +1 -0
  195. package/dist/inject/index.js +82 -0
  196. package/dist/inject/index.js.map +1 -0
  197. package/dist/injection.d.ts +13 -1
  198. package/dist/injection.d.ts.map +1 -1
  199. package/dist/injection.js +377 -0
  200. package/dist/injection.js.map +1 -0
  201. package/dist/intelligence/adaptive-validation.js +497 -0
  202. package/dist/intelligence/adaptive-validation.js.map +1 -0
  203. package/dist/intelligence/impact.js +675 -0
  204. package/dist/intelligence/impact.js.map +1 -0
  205. package/dist/intelligence/index.js +22 -0
  206. package/dist/intelligence/index.js.map +1 -0
  207. package/dist/intelligence/patterns.js +492 -0
  208. package/dist/intelligence/patterns.js.map +1 -0
  209. package/dist/intelligence/prediction.js +499 -0
  210. package/dist/intelligence/prediction.js.map +1 -0
  211. package/dist/intelligence/types.js +13 -0
  212. package/dist/intelligence/types.js.map +1 -0
  213. package/dist/internal.d.ts +8 -3
  214. package/dist/internal.d.ts.map +1 -1
  215. package/dist/internal.js +320 -0
  216. package/dist/internal.js.map +1 -0
  217. package/dist/issue/create.js +121 -0
  218. package/dist/issue/create.js.map +1 -0
  219. package/dist/issue/diagnostics.js +59 -0
  220. package/dist/issue/diagnostics.js.map +1 -0
  221. package/dist/issue/index.js +10 -0
  222. package/dist/issue/index.js.map +1 -0
  223. package/dist/issue/template-parser.js +267 -0
  224. package/dist/issue/template-parser.js.map +1 -0
  225. package/dist/json-schema-validator.js +76 -0
  226. package/dist/json-schema-validator.js.map +1 -0
  227. package/dist/lib/index.js +11 -0
  228. package/dist/lib/index.js.map +1 -0
  229. package/dist/lib/retry.js +152 -0
  230. package/dist/lib/retry.js.map +1 -0
  231. package/dist/lib/tree-sitter-languages.js +75 -0
  232. package/dist/lib/tree-sitter-languages.js.map +1 -0
  233. package/dist/lifecycle/chain-composition.js +152 -0
  234. package/dist/lifecycle/chain-composition.js.map +1 -0
  235. package/dist/lifecycle/chain-store.js +246 -0
  236. package/dist/lifecycle/chain-store.js.map +1 -0
  237. package/dist/lifecycle/consolidate-rcasd.js +352 -0
  238. package/dist/lifecycle/consolidate-rcasd.js.map +1 -0
  239. package/dist/lifecycle/default-chain.js +176 -0
  240. package/dist/lifecycle/default-chain.js.map +1 -0
  241. package/dist/lifecycle/evidence.js +180 -0
  242. package/dist/lifecycle/evidence.js.map +1 -0
  243. package/dist/lifecycle/frontmatter.js +363 -0
  244. package/dist/lifecycle/frontmatter.js.map +1 -0
  245. package/dist/lifecycle/index.js +756 -0
  246. package/dist/lifecycle/index.js.map +1 -0
  247. package/dist/lifecycle/pipeline.js +656 -0
  248. package/dist/lifecycle/pipeline.js.map +1 -0
  249. package/dist/lifecycle/rcasd-index.js +326 -0
  250. package/dist/lifecycle/rcasd-index.js.map +1 -0
  251. package/dist/lifecycle/rcasd-paths.js +220 -0
  252. package/dist/lifecycle/rcasd-paths.js.map +1 -0
  253. package/dist/lifecycle/resume.js +864 -0
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  257. package/dist/lifecycle/stage-guidance.js +234 -0
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  261. package/dist/lifecycle/state-machine.js +516 -0
  262. package/dist/lifecycle/state-machine.js.map +1 -0
  263. package/dist/lifecycle/tessera-engine.js +249 -0
  264. package/dist/lifecycle/tessera-engine.js.map +1 -0
  265. package/dist/logger.js +140 -0
  266. package/dist/logger.js.map +1 -0
  267. package/dist/memory/auto-extract.js +96 -0
  268. package/dist/memory/auto-extract.js.map +1 -0
  269. package/dist/memory/brain-backfill.js +389 -0
  270. package/dist/memory/brain-backfill.js.map +1 -0
  271. package/dist/memory/brain-consolidator.d.ts +48 -0
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  273. package/dist/memory/brain-consolidator.js +294 -0
  274. package/dist/memory/brain-consolidator.js.map +1 -0
  275. package/dist/memory/brain-embedding.js +66 -0
  276. package/dist/memory/brain-embedding.js.map +1 -0
  277. package/dist/memory/brain-lifecycle.d.ts +83 -2
  278. package/dist/memory/brain-lifecycle.d.ts.map +1 -1
  279. package/dist/memory/brain-lifecycle.js +807 -0
  280. package/dist/memory/brain-lifecycle.js.map +1 -0
  281. package/dist/memory/brain-links.js +161 -0
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  283. package/dist/memory/brain-maintenance.js +114 -0
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  289. package/dist/memory/brain-reasoning.js +215 -0
  290. package/dist/memory/brain-reasoning.js.map +1 -0
  291. package/dist/memory/brain-retrieval.d.ts +69 -1
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  293. package/dist/memory/brain-retrieval.js +912 -0
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  295. package/dist/memory/brain-row-types.js +10 -0
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  297. package/dist/memory/brain-search.d.ts.map +1 -1
  298. package/dist/memory/brain-search.js +528 -0
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  300. package/dist/memory/brain-similarity.js +145 -0
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  344. package/dist/memory/quality-scoring.d.ts +42 -5
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  348. package/dist/memory/session-memory.js +331 -0
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@@ -0,0 +1,47 @@
1
+ -- T528: Graph-native memory model — expand brain_page_nodes and brain_page_edges schemas.
2
+ -- Adds quality scoring, content hashing, last-activity tracking, provenance, and new
3
+ -- indexes to support traversable knowledge graph operations.
4
+ --
5
+ -- Additive only: all new columns have defaults so existing rows are unaffected.
6
+ -- brain_page_nodes has 0 rows and brain_page_edges has 0 rows (confirmed by R1 audit),
7
+ -- so no data migration is required.
8
+
9
+ ALTER TABLE `brain_page_nodes` ADD COLUMN `quality_score` real NOT NULL DEFAULT 0.5;
10
+ --> statement-breakpoint
11
+ ALTER TABLE `brain_page_nodes` ADD COLUMN `content_hash` text;
12
+ --> statement-breakpoint
13
+ ALTER TABLE `brain_page_nodes` ADD COLUMN `last_activity_at` text NOT NULL DEFAULT (datetime('now'));
14
+ --> statement-breakpoint
15
+ ALTER TABLE `brain_page_nodes` ADD COLUMN `updated_at` text;
16
+ --> statement-breakpoint
17
+ ALTER TABLE `brain_page_edges` ADD COLUMN `provenance` text;
18
+ --> statement-breakpoint
19
+
20
+ -- brain_page_edges.weight was nullable (DEFAULT 1) in the initial schema;
21
+ -- changing NOT NULL constraint requires recreating the table in SQLite.
22
+ -- Since brain_page_edges has 0 rows, we drop and recreate.
23
+ DROP TABLE IF EXISTS `brain_page_edges`;
24
+ --> statement-breakpoint
25
+ CREATE TABLE `brain_page_edges` (
26
+ `from_id` text NOT NULL,
27
+ `to_id` text NOT NULL,
28
+ `edge_type` text NOT NULL,
29
+ `weight` real NOT NULL DEFAULT 1,
30
+ `provenance` text,
31
+ `created_at` text NOT NULL DEFAULT (datetime('now')),
32
+ CONSTRAINT `brain_page_edges_pk` PRIMARY KEY(`from_id`, `to_id`, `edge_type`)
33
+ );
34
+ --> statement-breakpoint
35
+
36
+ CREATE INDEX IF NOT EXISTS `idx_brain_nodes_quality` ON `brain_page_nodes` (`quality_score`);
37
+ --> statement-breakpoint
38
+ CREATE INDEX IF NOT EXISTS `idx_brain_nodes_content_hash` ON `brain_page_nodes` (`content_hash`);
39
+ --> statement-breakpoint
40
+ CREATE INDEX IF NOT EXISTS `idx_brain_nodes_last_activity` ON `brain_page_nodes` (`last_activity_at`);
41
+ --> statement-breakpoint
42
+ CREATE INDEX IF NOT EXISTS `idx_brain_edges_type` ON `brain_page_edges` (`edge_type`);
43
+ --> statement-breakpoint
44
+ -- Re-create existing edge indexes (dropped with table)
45
+ CREATE INDEX IF NOT EXISTS `idx_brain_edges_from` ON `brain_page_edges` (`from_id`);
46
+ --> statement-breakpoint
47
+ CREATE INDEX IF NOT EXISTS `idx_brain_edges_to` ON `brain_page_edges` (`to_id`);
@@ -0,0 +1,23 @@
1
+ -- T531: Wire quality scoring into brain memory store functions.
2
+ -- Adds quality_score column to the four typed brain tables.
3
+ -- NULL is used for legacy rows (not yet scored); new rows get a computed score.
4
+ -- Search filtering uses "IS NULL OR quality_score >= 0.3" so legacy entries are retained.
5
+ --
6
+ -- Additive only: all columns are nullable so existing rows are unaffected.
7
+
8
+ ALTER TABLE `brain_decisions` ADD COLUMN `quality_score` real;
9
+ --> statement-breakpoint
10
+ ALTER TABLE `brain_patterns` ADD COLUMN `quality_score` real;
11
+ --> statement-breakpoint
12
+ ALTER TABLE `brain_learnings` ADD COLUMN `quality_score` real;
13
+ --> statement-breakpoint
14
+ ALTER TABLE `brain_observations` ADD COLUMN `quality_score` real;
15
+ --> statement-breakpoint
16
+
17
+ CREATE INDEX IF NOT EXISTS `idx_brain_decisions_quality` ON `brain_decisions` (`quality_score`);
18
+ --> statement-breakpoint
19
+ CREATE INDEX IF NOT EXISTS `idx_brain_patterns_quality` ON `brain_patterns` (`quality_score`);
20
+ --> statement-breakpoint
21
+ CREATE INDEX IF NOT EXISTS `idx_brain_learnings_quality` ON `brain_learnings` (`quality_score`);
22
+ --> statement-breakpoint
23
+ CREATE INDEX IF NOT EXISTS `idx_brain_observations_quality` ON `brain_observations` (`quality_score`);
@@ -0,0 +1,195 @@
1
+ -- T549: Tiered + Typed Memory Architecture v2
2
+ -- Adds: memory_tier, memory_type (cognitive), verified, valid_at, invalid_at,
3
+ -- source_confidence, citation_count to all four typed brain tables.
4
+ --
5
+ -- Strategy: all columns are nullable or have defaults; no existing rows are broken.
6
+ -- NULL-handling contracts: legacy rows are backfilled at the end of this migration.
7
+ -- memory_tier NULL → treated as 'medium' at query time (survived T523 purge).
8
+ -- memory_type NULL → treated as table default at query time.
9
+ -- CONFLICT-03 resolution: citation_count added per cross-validation report (T549-XV).
10
+ -- CONFLICT-01 resolution: cognitive type enum is BRAIN_COGNITIVE_TYPES (semantic/episodic/procedural).
11
+ -- T553 fix: valid_at columns use nullable DEFAULT (datetime('now')) instead of NOT NULL DEFAULT
12
+ -- because SQLite forbids ALTER TABLE ADD COLUMN with a non-constant default on non-empty tables.
13
+ -- The backfill UPDATEs at the end of this migration set valid_at = created_at for all existing
14
+ -- rows, so no row ever has a NULL valid_at after migration completes.
15
+
16
+ -- ============================================================
17
+ -- brain_decisions
18
+ -- ============================================================
19
+
20
+ ALTER TABLE `brain_decisions` ADD COLUMN `memory_tier` text DEFAULT 'short';
21
+ --> statement-breakpoint
22
+ ALTER TABLE `brain_decisions` ADD COLUMN `memory_type` text DEFAULT 'semantic';
23
+ --> statement-breakpoint
24
+ ALTER TABLE `brain_decisions` ADD COLUMN `verified` integer NOT NULL DEFAULT 0;
25
+ --> statement-breakpoint
26
+ ALTER TABLE `brain_decisions` ADD COLUMN `valid_at` text DEFAULT (datetime('now'));
27
+ --> statement-breakpoint
28
+ ALTER TABLE `brain_decisions` ADD COLUMN `invalid_at` text;
29
+ --> statement-breakpoint
30
+ ALTER TABLE `brain_decisions` ADD COLUMN `source_confidence` text DEFAULT 'agent';
31
+ --> statement-breakpoint
32
+ ALTER TABLE `brain_decisions` ADD COLUMN `citation_count` integer NOT NULL DEFAULT 0;
33
+ --> statement-breakpoint
34
+
35
+ -- ============================================================
36
+ -- brain_patterns
37
+ -- ============================================================
38
+
39
+ ALTER TABLE `brain_patterns` ADD COLUMN `memory_tier` text DEFAULT 'short';
40
+ --> statement-breakpoint
41
+ ALTER TABLE `brain_patterns` ADD COLUMN `memory_type` text DEFAULT 'procedural';
42
+ --> statement-breakpoint
43
+ ALTER TABLE `brain_patterns` ADD COLUMN `verified` integer NOT NULL DEFAULT 0;
44
+ --> statement-breakpoint
45
+ ALTER TABLE `brain_patterns` ADD COLUMN `valid_at` text DEFAULT (datetime('now'));
46
+ --> statement-breakpoint
47
+ ALTER TABLE `brain_patterns` ADD COLUMN `invalid_at` text;
48
+ --> statement-breakpoint
49
+ ALTER TABLE `brain_patterns` ADD COLUMN `source_confidence` text DEFAULT 'agent';
50
+ --> statement-breakpoint
51
+ ALTER TABLE `brain_patterns` ADD COLUMN `citation_count` integer NOT NULL DEFAULT 0;
52
+ --> statement-breakpoint
53
+
54
+ -- ============================================================
55
+ -- brain_learnings
56
+ -- ============================================================
57
+
58
+ ALTER TABLE `brain_learnings` ADD COLUMN `memory_tier` text DEFAULT 'short';
59
+ --> statement-breakpoint
60
+ ALTER TABLE `brain_learnings` ADD COLUMN `memory_type` text DEFAULT 'semantic';
61
+ --> statement-breakpoint
62
+ ALTER TABLE `brain_learnings` ADD COLUMN `verified` integer NOT NULL DEFAULT 0;
63
+ --> statement-breakpoint
64
+ ALTER TABLE `brain_learnings` ADD COLUMN `valid_at` text DEFAULT (datetime('now'));
65
+ --> statement-breakpoint
66
+ ALTER TABLE `brain_learnings` ADD COLUMN `invalid_at` text;
67
+ --> statement-breakpoint
68
+ ALTER TABLE `brain_learnings` ADD COLUMN `source_confidence` text DEFAULT 'agent';
69
+ --> statement-breakpoint
70
+ ALTER TABLE `brain_learnings` ADD COLUMN `citation_count` integer NOT NULL DEFAULT 0;
71
+ --> statement-breakpoint
72
+
73
+ -- ============================================================
74
+ -- brain_observations
75
+ -- ============================================================
76
+
77
+ ALTER TABLE `brain_observations` ADD COLUMN `memory_tier` text DEFAULT 'short';
78
+ --> statement-breakpoint
79
+ ALTER TABLE `brain_observations` ADD COLUMN `memory_type` text DEFAULT 'episodic';
80
+ --> statement-breakpoint
81
+ ALTER TABLE `brain_observations` ADD COLUMN `verified` integer NOT NULL DEFAULT 0;
82
+ --> statement-breakpoint
83
+ ALTER TABLE `brain_observations` ADD COLUMN `valid_at` text DEFAULT (datetime('now'));
84
+ --> statement-breakpoint
85
+ ALTER TABLE `brain_observations` ADD COLUMN `invalid_at` text;
86
+ --> statement-breakpoint
87
+ ALTER TABLE `brain_observations` ADD COLUMN `source_confidence` text DEFAULT 'agent';
88
+ --> statement-breakpoint
89
+ ALTER TABLE `brain_observations` ADD COLUMN `citation_count` integer NOT NULL DEFAULT 0;
90
+ --> statement-breakpoint
91
+
92
+ -- ============================================================
93
+ -- Indexes for new columns (query hot paths)
94
+ -- ============================================================
95
+
96
+ CREATE INDEX IF NOT EXISTS `idx_brain_decisions_tier` ON `brain_decisions` (`memory_tier`);
97
+ --> statement-breakpoint
98
+ CREATE INDEX IF NOT EXISTS `idx_brain_decisions_type` ON `brain_decisions` (`memory_type`);
99
+ --> statement-breakpoint
100
+ CREATE INDEX IF NOT EXISTS `idx_brain_decisions_verified` ON `brain_decisions` (`verified`);
101
+ --> statement-breakpoint
102
+ CREATE INDEX IF NOT EXISTS `idx_brain_decisions_valid_at` ON `brain_decisions` (`valid_at`);
103
+ --> statement-breakpoint
104
+ CREATE INDEX IF NOT EXISTS `idx_brain_decisions_source_conf` ON `brain_decisions` (`source_confidence`);
105
+ --> statement-breakpoint
106
+
107
+ CREATE INDEX IF NOT EXISTS `idx_brain_patterns_tier` ON `brain_patterns` (`memory_tier`);
108
+ --> statement-breakpoint
109
+ CREATE INDEX IF NOT EXISTS `idx_brain_patterns_type` ON `brain_patterns` (`memory_type`);
110
+ --> statement-breakpoint
111
+ CREATE INDEX IF NOT EXISTS `idx_brain_patterns_verified` ON `brain_patterns` (`verified`);
112
+ --> statement-breakpoint
113
+ CREATE INDEX IF NOT EXISTS `idx_brain_patterns_valid_at` ON `brain_patterns` (`valid_at`);
114
+ --> statement-breakpoint
115
+ CREATE INDEX IF NOT EXISTS `idx_brain_patterns_source_conf` ON `brain_patterns` (`source_confidence`);
116
+ --> statement-breakpoint
117
+
118
+ CREATE INDEX IF NOT EXISTS `idx_brain_learnings_tier` ON `brain_learnings` (`memory_tier`);
119
+ --> statement-breakpoint
120
+ CREATE INDEX IF NOT EXISTS `idx_brain_learnings_type` ON `brain_learnings` (`memory_type`);
121
+ --> statement-breakpoint
122
+ CREATE INDEX IF NOT EXISTS `idx_brain_learnings_verified` ON `brain_learnings` (`verified`);
123
+ --> statement-breakpoint
124
+ CREATE INDEX IF NOT EXISTS `idx_brain_learnings_valid_at` ON `brain_learnings` (`valid_at`);
125
+ --> statement-breakpoint
126
+ CREATE INDEX IF NOT EXISTS `idx_brain_learnings_invalid` ON `brain_learnings` (`invalid_at`);
127
+ --> statement-breakpoint
128
+ CREATE INDEX IF NOT EXISTS `idx_brain_learnings_source_conf` ON `brain_learnings` (`source_confidence`);
129
+ --> statement-breakpoint
130
+
131
+ CREATE INDEX IF NOT EXISTS `idx_brain_observations_tier` ON `brain_observations` (`memory_tier`);
132
+ --> statement-breakpoint
133
+ CREATE INDEX IF NOT EXISTS `idx_brain_observations_type` ON `brain_observations` (`memory_type`);
134
+ --> statement-breakpoint
135
+ CREATE INDEX IF NOT EXISTS `idx_brain_observations_verified` ON `brain_observations` (`verified`);
136
+ --> statement-breakpoint
137
+ CREATE INDEX IF NOT EXISTS `idx_brain_observations_valid_at` ON `brain_observations` (`valid_at`);
138
+ --> statement-breakpoint
139
+ CREATE INDEX IF NOT EXISTS `idx_brain_observations_invalid` ON `brain_observations` (`invalid_at`);
140
+ --> statement-breakpoint
141
+ CREATE INDEX IF NOT EXISTS `idx_brain_observations_source_conf` ON `brain_observations` (`source_confidence`);
142
+ --> statement-breakpoint
143
+
144
+ -- ============================================================
145
+ -- Backfill: legacy rows (survivors of the T523 purge)
146
+ -- Treat existing rows as medium-to-long-term based on quality signals.
147
+ -- valid_at defaults to created_at so bitemporal queries work correctly.
148
+ -- ============================================================
149
+
150
+ UPDATE `brain_decisions` SET
151
+ memory_tier = CASE
152
+ WHEN confidence = 'high' THEN 'long'
153
+ WHEN confidence = 'medium' THEN 'medium'
154
+ ELSE 'medium'
155
+ END,
156
+ memory_type = 'semantic',
157
+ valid_at = created_at,
158
+ source_confidence = 'agent'
159
+ WHERE memory_tier IS NULL;
160
+ --> statement-breakpoint
161
+
162
+ UPDATE `brain_patterns` SET
163
+ memory_tier = CASE
164
+ WHEN frequency >= 5 THEN 'long'
165
+ WHEN frequency >= 2 THEN 'medium'
166
+ ELSE 'medium'
167
+ END,
168
+ memory_type = 'procedural',
169
+ valid_at = extracted_at,
170
+ source_confidence = 'agent'
171
+ WHERE memory_tier IS NULL;
172
+ --> statement-breakpoint
173
+
174
+ UPDATE `brain_learnings` SET
175
+ memory_tier = CASE
176
+ WHEN confidence >= 0.80 THEN 'long'
177
+ WHEN confidence >= 0.60 THEN 'medium'
178
+ ELSE 'medium'
179
+ END,
180
+ memory_type = 'semantic',
181
+ valid_at = created_at,
182
+ source_confidence = 'agent'
183
+ WHERE memory_tier IS NULL;
184
+ --> statement-breakpoint
185
+
186
+ UPDATE `brain_observations` SET
187
+ memory_tier = 'medium',
188
+ memory_type = 'episodic',
189
+ valid_at = created_at,
190
+ source_confidence = CASE
191
+ WHEN source_type = 'manual' THEN 'owner'
192
+ WHEN source_type = 'session-debrief' THEN 'task-outcome'
193
+ ELSE 'agent'
194
+ END
195
+ WHERE memory_tier IS NULL;
@@ -0,0 +1,49 @@
1
+ CREATE TABLE IF NOT EXISTS `nexus_nodes` (
2
+ `id` text PRIMARY KEY,
3
+ `project_id` text NOT NULL,
4
+ `kind` text NOT NULL,
5
+ `label` text NOT NULL,
6
+ `name` text,
7
+ `file_path` text,
8
+ `start_line` integer,
9
+ `end_line` integer,
10
+ `language` text,
11
+ `is_exported` integer DEFAULT false NOT NULL,
12
+ `parent_id` text,
13
+ `parameters_json` text,
14
+ `return_type` text,
15
+ `doc_summary` text,
16
+ `community_id` text,
17
+ `meta_json` text,
18
+ `indexed_at` text DEFAULT (datetime('now')) NOT NULL
19
+ );
20
+ --> statement-breakpoint
21
+ CREATE TABLE IF NOT EXISTS `nexus_relations` (
22
+ `id` text PRIMARY KEY,
23
+ `project_id` text NOT NULL,
24
+ `source_id` text NOT NULL,
25
+ `target_id` text NOT NULL,
26
+ `type` text NOT NULL,
27
+ `confidence` real NOT NULL,
28
+ `reason` text,
29
+ `step` integer,
30
+ `indexed_at` text DEFAULT (datetime('now')) NOT NULL
31
+ );
32
+ --> statement-breakpoint
33
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_project` ON `nexus_nodes` (`project_id`);--> statement-breakpoint
34
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_kind` ON `nexus_nodes` (`kind`);--> statement-breakpoint
35
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_file` ON `nexus_nodes` (`file_path`);--> statement-breakpoint
36
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_name` ON `nexus_nodes` (`name`);--> statement-breakpoint
37
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_project_kind` ON `nexus_nodes` (`project_id`,`kind`);--> statement-breakpoint
38
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_project_file` ON `nexus_nodes` (`project_id`,`file_path`);--> statement-breakpoint
39
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_community` ON `nexus_nodes` (`community_id`);--> statement-breakpoint
40
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_parent` ON `nexus_nodes` (`parent_id`);--> statement-breakpoint
41
+ CREATE INDEX IF NOT EXISTS `idx_nexus_nodes_exported` ON `nexus_nodes` (`is_exported`);--> statement-breakpoint
42
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_project` ON `nexus_relations` (`project_id`);--> statement-breakpoint
43
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_source` ON `nexus_relations` (`source_id`);--> statement-breakpoint
44
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_target` ON `nexus_relations` (`target_id`);--> statement-breakpoint
45
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_type` ON `nexus_relations` (`type`);--> statement-breakpoint
46
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_project_type` ON `nexus_relations` (`project_id`,`type`);--> statement-breakpoint
47
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_source_type` ON `nexus_relations` (`source_id`,`type`);--> statement-breakpoint
48
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_target_type` ON `nexus_relations` (`target_id`,`type`);--> statement-breakpoint
49
+ CREATE INDEX IF NOT EXISTS `idx_nexus_relations_confidence` ON `nexus_relations` (`confidence`);
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cleocode/core",
3
- "version": "2026.4.31",
3
+ "version": "2026.4.35",
4
4
  "description": "CLEO core business logic kernel — tasks, sessions, memory, orchestration, lifecycle, with bundled SQLite store",
5
5
  "type": "module",
6
6
  "main": "./dist/index.js",
@@ -47,13 +47,13 @@
47
47
  "write-file-atomic": "^7.0.1",
48
48
  "yaml": "^2.8.3",
49
49
  "zod": "^4.3.6",
50
- "@cleocode/adapters": "2026.4.31",
51
- "@cleocode/agents": "2026.4.31",
52
- "@cleocode/caamp": "2026.4.31",
53
- "@cleocode/contracts": "2026.4.31",
54
- "@cleocode/lafs": "2026.4.31",
55
- "@cleocode/nexus": "0.1.0",
56
- "@cleocode/skills": "2026.4.31"
50
+ "@cleocode/adapters": "2026.4.35",
51
+ "@cleocode/agents": "2026.4.35",
52
+ "@cleocode/caamp": "2026.4.35",
53
+ "@cleocode/contracts": "2026.4.35",
54
+ "@cleocode/lafs": "2026.4.35",
55
+ "@cleocode/nexus": "2026.4.35",
56
+ "@cleocode/skills": "2026.4.35"
57
57
  },
58
58
  "engines": {
59
59
  "node": ">=24.0.0"
@@ -17,13 +17,19 @@ import './notification-hooks.js';
17
17
  import './work-capture-hooks.js';
18
18
  import './agent-hooks.js';
19
19
  import './context-hooks.js';
20
+ import './watchdog-hooks.js';
21
+ // T549 Wave 5-D/E: Intelligence hooks (best-effort risk detection on task start)
22
+ import './intelligence-hooks.js';
20
23
 
21
24
  export { handleSubagentStart, handleSubagentStop } from './agent-hooks.js';
22
25
  export { handlePostCompact, handlePreCompact } from './context-hooks.js';
23
26
  export { handleError } from './error-hooks.js';
24
27
  export { handleFileChange } from './file-hooks.js';
28
+ // T549 Wave 5-D/E: Intelligence hook exports
29
+ export { handleTaskStartIntelligence } from './intelligence-hooks.js';
25
30
  export { handleSystemNotification } from './notification-hooks.js';
26
31
  // Re-export handler functions for explicit use
27
32
  export { handleSessionEnd, handleSessionStart } from './session-hooks.js';
28
33
  export { handleToolComplete, handleToolStart } from './task-hooks.js';
34
+ export { handleWatchdogStart, handleWatchdogStop } from './watchdog-hooks.js';
29
35
  export { handleWorkPromptSubmit, handleWorkResponseComplete } from './work-capture-hooks.js';
@@ -0,0 +1,80 @@
1
+ /**
2
+ * Intelligence Hook Handlers — Wave 5-D/E of T549
3
+ *
4
+ * Best-effort intelligence side-effects wired into task lifecycle events.
5
+ *
6
+ * On task start → calculate risk; if riskScore exceeds the HIGH threshold
7
+ * (≥ 0.8), store a warning observation so future agents see it.
8
+ *
9
+ * All handlers are fire-and-forget: failures MUST NOT propagate or block the
10
+ * operation that triggered them.
11
+ *
12
+ * @task T549
13
+ * @epic T549
14
+ */
15
+
16
+ import { hooks } from '../registry.js';
17
+ import type { PreToolUsePayload } from '../types.js';
18
+
19
+ // Risk thresholds — mirror RISK_THRESHOLDS in intelligence/prediction.ts
20
+ const RISK_HIGH = 0.8;
21
+
22
+ // ============================================================================
23
+ // Task Start — Risk Detection
24
+ // ============================================================================
25
+
26
+ /**
27
+ * Handle task start: calculate risk and store a warning observation if the
28
+ * riskScore is at or above the HIGH threshold (≥ 0.8).
29
+ *
30
+ * Uses deferred imports so this module can be imported in environments where
31
+ * not all transitive dependencies (brain.db, tasks.db) are present.
32
+ *
33
+ * Best-effort: any error is silently swallowed.
34
+ */
35
+ export async function handleTaskStartIntelligence(
36
+ projectRoot: string,
37
+ payload: PreToolUsePayload,
38
+ ): Promise<void> {
39
+ try {
40
+ // Deferred relative imports — avoids circular dependency issues and keeps
41
+ // this module loadable in environments where brain.db is not initialised.
42
+ const { getAccessor } = await import('../../store/data-accessor.js');
43
+ const { getBrainAccessor } = await import('../../store/brain-accessor.js');
44
+ const { calculateTaskRisk } = await import('../../intelligence/prediction.js');
45
+ const { observeBrain } = await import('../../memory/brain-retrieval.js');
46
+
47
+ const [accessor, brain] = await Promise.all([
48
+ getAccessor(projectRoot),
49
+ getBrainAccessor(projectRoot),
50
+ ]);
51
+
52
+ const risk = await calculateTaskRisk(payload.taskId, accessor, brain);
53
+
54
+ if (risk.riskScore >= RISK_HIGH) {
55
+ const level = risk.riskScore >= 0.95 ? 'critical' : 'high';
56
+ const factorNames = risk.factors.map((f) => f.name).join(', ');
57
+ await observeBrain(projectRoot, {
58
+ text: `Risk alert for ${payload.taskId} (score ${risk.riskScore.toFixed(2)}): ${factorNames}. ${risk.recommendation}`,
59
+ title: `Task risk: ${level} — ${payload.taskId}`,
60
+ type: 'discovery',
61
+ sourceType: 'agent',
62
+ });
63
+ }
64
+ } catch {
65
+ // Best-effort — never block task start
66
+ }
67
+ }
68
+
69
+ // ============================================================================
70
+ // Registration
71
+ // ============================================================================
72
+
73
+ hooks.register({
74
+ id: 'intelligence-task-start',
75
+ event: 'PreToolUse',
76
+ handler: handleTaskStartIntelligence,
77
+ // Priority 50: runs after brain-tool-start (100) so the task observation is
78
+ // already persisted before we assess risk.
79
+ priority: 50,
80
+ });
@@ -13,6 +13,8 @@
13
13
  * T527: Removed duplicate session observeBrain writes — session data already
14
14
  * lives in the sessions table; writing it again to brain_observations
15
15
  * was pure noise.
16
+ * T549 Wave 3-E: Fire-and-forget sleep-time consolidation on session end.
17
+ * Runs after backup (priority 5) so brain.db snapshot is captured first.
16
18
  */
17
19
 
18
20
  import { hooks } from '../registry.js';
@@ -109,6 +111,36 @@ export async function handleSessionEndBackup(
109
111
  }
110
112
  }
111
113
 
114
+ /**
115
+ * Handle SessionEnd — fire-and-forget sleep-time memory consolidation.
116
+ *
117
+ * T549 Wave 3-E: Runs the full consolidation pipeline (dedup, quality recompute,
118
+ * tier promotion, contradiction detection, soft eviction, graph strengthening,
119
+ * summary generation) in the background after the session backup has completed.
120
+ *
121
+ * Uses setImmediate to yield control so the session end flow completes before
122
+ * consolidation begins. Consolidation errors are caught and logged to console.warn
123
+ * — they MUST NOT block session end or throw to callers.
124
+ *
125
+ * Priority 5 ensures this runs last (after backup at priority 10).
126
+ */
127
+ export async function handleSessionEndConsolidation(
128
+ projectRoot: string,
129
+ _payload: SessionEndPayload,
130
+ ): Promise<void> {
131
+ // Schedule consolidation to run after the current event loop turn.
132
+ // This ensures the session end response reaches the caller before
133
+ // consolidation begins, matching the "sleep-time compute" pattern.
134
+ setImmediate(async () => {
135
+ try {
136
+ const { runConsolidation } = await import('../../memory/brain-lifecycle.js');
137
+ await runConsolidation(projectRoot);
138
+ } catch (err) {
139
+ console.warn('[consolidation] Session-end consolidation failed:', err);
140
+ }
141
+ });
142
+ }
143
+
112
144
  // Register handlers on module load
113
145
  hooks.register({
114
146
  id: 'brain-session-start',
@@ -133,3 +165,12 @@ hooks.register({
133
165
  handler: handleSessionEndBackup,
134
166
  priority: 10,
135
167
  });
168
+
169
+ // Priority 5 runs AFTER backup (priority 10) — consolidation is purely
170
+ // additive and should not delay the backup point-in-time snapshot.
171
+ hooks.register({
172
+ id: 'consolidation-session-end',
173
+ event: 'SessionEnd',
174
+ handler: handleSessionEndConsolidation,
175
+ priority: 5,
176
+ });