@cleocode/core 2026.4.12 → 2026.4.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (924) hide show
  1. package/dist/index.js +69233 -175
  2. package/dist/index.js.map +7 -1
  3. package/dist/init.d.ts.map +1 -1
  4. package/dist/internal.d.ts +16 -5
  5. package/dist/internal.d.ts.map +1 -1
  6. package/dist/memory/brain-embedding.d.ts +1 -1
  7. package/dist/memory/embedding-local.d.ts +8 -3
  8. package/dist/memory/embedding-local.d.ts.map +1 -1
  9. package/dist/memory/embedding-worker.d.ts +1 -1
  10. package/dist/memory/learnings.d.ts +2 -2
  11. package/dist/memory/patterns.d.ts +6 -6
  12. package/dist/store/agent-registry-accessor.d.ts +54 -1
  13. package/dist/store/agent-registry-accessor.d.ts.map +1 -1
  14. package/dist/store/backup-crypto.d.ts +89 -0
  15. package/dist/store/backup-crypto.d.ts.map +1 -0
  16. package/dist/store/backup-pack.d.ts +91 -0
  17. package/dist/store/backup-pack.d.ts.map +1 -0
  18. package/dist/store/backup-unpack.d.ts +140 -0
  19. package/dist/store/backup-unpack.d.ts.map +1 -0
  20. package/dist/store/migrate-signaldock-to-conduit.d.ts.map +1 -1
  21. package/dist/store/regenerators.d.ts +126 -0
  22. package/dist/store/regenerators.d.ts.map +1 -0
  23. package/dist/store/restore-conflict-report.d.ts +118 -0
  24. package/dist/store/restore-conflict-report.d.ts.map +1 -0
  25. package/dist/store/restore-json-merge.d.ts +187 -0
  26. package/dist/store/restore-json-merge.d.ts.map +1 -0
  27. package/dist/store/sqlite-backup.d.ts +60 -5
  28. package/dist/store/sqlite-backup.d.ts.map +1 -1
  29. package/dist/store/t310-readiness.d.ts +83 -0
  30. package/dist/store/t310-readiness.d.ts.map +1 -0
  31. package/package.json +11 -9
  32. package/src/__tests__/cli-parity.test.ts +19 -14
  33. package/src/__tests__/human-output.test.ts +13 -11
  34. package/src/init.ts +18 -8
  35. package/src/internal.ts +52 -2
  36. package/src/memory/__tests__/brain-automation.test.ts +2 -2
  37. package/src/memory/brain-embedding.ts +1 -1
  38. package/src/memory/embedding-local.ts +10 -5
  39. package/src/memory/embedding-worker.ts +1 -1
  40. package/src/skills/__tests__/discovery.test.ts +22 -7
  41. package/src/store/__tests__/backup-crypto.test.ts +101 -0
  42. package/src/store/__tests__/backup-pack.test.ts +491 -0
  43. package/src/store/__tests__/backup-unpack.test.ts +298 -0
  44. package/src/store/__tests__/performance-safety.test.ts +11 -5
  45. package/src/store/__tests__/regenerators.test.ts +234 -0
  46. package/src/store/__tests__/restore-conflict-report.test.ts +274 -0
  47. package/src/store/__tests__/restore-json-merge.test.ts +521 -0
  48. package/src/store/__tests__/t310-readiness.test.ts +111 -0
  49. package/src/store/__tests__/t311-integration.test.ts +661 -0
  50. package/src/store/backup-crypto.ts +209 -0
  51. package/src/store/backup-pack.ts +739 -0
  52. package/src/store/backup-unpack.ts +583 -0
  53. package/src/store/migrate-signaldock-to-conduit.ts +14 -7
  54. package/src/store/regenerators.ts +243 -0
  55. package/src/store/restore-conflict-report.ts +317 -0
  56. package/src/store/restore-json-merge.ts +653 -0
  57. package/src/store/t310-readiness.ts +119 -0
  58. package/src/validation/protocols/_shared.ts +1 -1
  59. package/dist/adapters/adapter-registry.js +0 -64
  60. package/dist/adapters/adapter-registry.js.map +0 -1
  61. package/dist/adapters/discovery.js +0 -83
  62. package/dist/adapters/discovery.js.map +0 -1
  63. package/dist/adapters/index.js +0 -9
  64. package/dist/adapters/index.js.map +0 -1
  65. package/dist/adapters/manager.js +0 -260
  66. package/dist/adapters/manager.js.map +0 -1
  67. package/dist/admin/export-tasks.js +0 -171
  68. package/dist/admin/export-tasks.js.map +0 -1
  69. package/dist/admin/export.js +0 -103
  70. package/dist/admin/export.js.map +0 -1
  71. package/dist/admin/help.js +0 -106
  72. package/dist/admin/help.js.map +0 -1
  73. package/dist/admin/import-tasks.js +0 -182
  74. package/dist/admin/import-tasks.js.map +0 -1
  75. package/dist/admin/import.js +0 -129
  76. package/dist/admin/import.js.map +0 -1
  77. package/dist/admin/index.js +0 -13
  78. package/dist/admin/index.js.map +0 -1
  79. package/dist/adrs/find.js +0 -134
  80. package/dist/adrs/find.js.map +0 -1
  81. package/dist/adrs/index.js +0 -15
  82. package/dist/adrs/index.js.map +0 -1
  83. package/dist/adrs/link-pipeline.js +0 -160
  84. package/dist/adrs/link-pipeline.js.map +0 -1
  85. package/dist/adrs/list.js +0 -43
  86. package/dist/adrs/list.js.map +0 -1
  87. package/dist/adrs/parse.js +0 -51
  88. package/dist/adrs/parse.js.map +0 -1
  89. package/dist/adrs/show.js +0 -22
  90. package/dist/adrs/show.js.map +0 -1
  91. package/dist/adrs/sync.js +0 -188
  92. package/dist/adrs/sync.js.map +0 -1
  93. package/dist/adrs/types.js +0 -9
  94. package/dist/adrs/types.js.map +0 -1
  95. package/dist/adrs/validate.js +0 -57
  96. package/dist/adrs/validate.js.map +0 -1
  97. package/dist/agents/agent-registry.js +0 -288
  98. package/dist/agents/agent-registry.js.map +0 -1
  99. package/dist/agents/agent-schema.js +0 -82
  100. package/dist/agents/agent-schema.js.map +0 -1
  101. package/dist/agents/capacity.js +0 -116
  102. package/dist/agents/capacity.js.map +0 -1
  103. package/dist/agents/execution-learning.js +0 -474
  104. package/dist/agents/execution-learning.js.map +0 -1
  105. package/dist/agents/health-monitor.js +0 -217
  106. package/dist/agents/health-monitor.js.map +0 -1
  107. package/dist/agents/index.js +0 -29
  108. package/dist/agents/index.js.map +0 -1
  109. package/dist/agents/registry.js +0 -314
  110. package/dist/agents/registry.js.map +0 -1
  111. package/dist/agents/retry.js +0 -215
  112. package/dist/agents/retry.js.map +0 -1
  113. package/dist/audit-prune.js +0 -94
  114. package/dist/audit-prune.js.map +0 -1
  115. package/dist/audit.js +0 -68
  116. package/dist/audit.js.map +0 -1
  117. package/dist/backfill/index.js +0 -229
  118. package/dist/backfill/index.js.map +0 -1
  119. package/dist/bootstrap.js +0 -344
  120. package/dist/bootstrap.js.map +0 -1
  121. package/dist/caamp/adapter.js +0 -259
  122. package/dist/caamp/adapter.js.map +0 -1
  123. package/dist/caamp/capability-check.js +0 -38
  124. package/dist/caamp/capability-check.js.map +0 -1
  125. package/dist/caamp/index.js +0 -21
  126. package/dist/caamp/index.js.map +0 -1
  127. package/dist/caamp-init.js +0 -16
  128. package/dist/caamp-init.js.map +0 -1
  129. package/dist/cleo.js +0 -322
  130. package/dist/cleo.js.map +0 -1
  131. package/dist/code/index.js +0 -10
  132. package/dist/code/index.js.map +0 -1
  133. package/dist/code/outline.js +0 -165
  134. package/dist/code/outline.js.map +0 -1
  135. package/dist/code/parser.js +0 -295
  136. package/dist/code/parser.js.map +0 -1
  137. package/dist/code/search.js +0 -135
  138. package/dist/code/search.js.map +0 -1
  139. package/dist/code/unfold.js +0 -155
  140. package/dist/code/unfold.js.map +0 -1
  141. package/dist/codebase-map/analyzers/architecture.js +0 -129
  142. package/dist/codebase-map/analyzers/architecture.js.map +0 -1
  143. package/dist/codebase-map/analyzers/concerns.js +0 -122
  144. package/dist/codebase-map/analyzers/concerns.js.map +0 -1
  145. package/dist/codebase-map/analyzers/conventions.js +0 -149
  146. package/dist/codebase-map/analyzers/conventions.js.map +0 -1
  147. package/dist/codebase-map/analyzers/integrations.js +0 -108
  148. package/dist/codebase-map/analyzers/integrations.js.map +0 -1
  149. package/dist/codebase-map/analyzers/stack.js +0 -117
  150. package/dist/codebase-map/analyzers/stack.js.map +0 -1
  151. package/dist/codebase-map/analyzers/structure.js +0 -137
  152. package/dist/codebase-map/analyzers/structure.js.map +0 -1
  153. package/dist/codebase-map/analyzers/testing.js +0 -118
  154. package/dist/codebase-map/analyzers/testing.js.map +0 -1
  155. package/dist/codebase-map/index.js +0 -57
  156. package/dist/codebase-map/index.js.map +0 -1
  157. package/dist/codebase-map/store.js +0 -122
  158. package/dist/codebase-map/store.js.map +0 -1
  159. package/dist/codebase-map/summary.js +0 -152
  160. package/dist/codebase-map/summary.js.map +0 -1
  161. package/dist/compliance/index.js +0 -288
  162. package/dist/compliance/index.js.map +0 -1
  163. package/dist/compliance/protocol-enforcement.js +0 -332
  164. package/dist/compliance/protocol-enforcement.js.map +0 -1
  165. package/dist/compliance/protocol-rules.js +0 -786
  166. package/dist/compliance/protocol-rules.js.map +0 -1
  167. package/dist/compliance/protocol-types.js +0 -79
  168. package/dist/compliance/protocol-types.js.map +0 -1
  169. package/dist/compliance/store.js +0 -53
  170. package/dist/compliance/store.js.map +0 -1
  171. package/dist/conduit/conduit-client.js +0 -107
  172. package/dist/conduit/conduit-client.js.map +0 -1
  173. package/dist/conduit/factory.js +0 -52
  174. package/dist/conduit/factory.js.map +0 -1
  175. package/dist/conduit/http-transport.js +0 -155
  176. package/dist/conduit/http-transport.js.map +0 -1
  177. package/dist/conduit/index.js +0 -15
  178. package/dist/conduit/index.js.map +0 -1
  179. package/dist/conduit/local-transport.js +0 -255
  180. package/dist/conduit/local-transport.js.map +0 -1
  181. package/dist/conduit/sse-transport.js +0 -299
  182. package/dist/conduit/sse-transport.js.map +0 -1
  183. package/dist/config/build-config.js +0 -29
  184. package/dist/config/build-config.js.map +0 -1
  185. package/dist/config.js +0 -400
  186. package/dist/config.js.map +0 -1
  187. package/dist/constants.js +0 -18
  188. package/dist/constants.js.map +0 -1
  189. package/dist/context/index.js +0 -137
  190. package/dist/context/index.js.map +0 -1
  191. package/dist/crypto/credentials.js +0 -191
  192. package/dist/crypto/credentials.js.map +0 -1
  193. package/dist/discovery.js +0 -182
  194. package/dist/discovery.js.map +0 -1
  195. package/dist/engine-result.js +0 -12
  196. package/dist/engine-result.js.map +0 -1
  197. package/dist/error-catalog.js +0 -404
  198. package/dist/error-catalog.js.map +0 -1
  199. package/dist/error-registry.js +0 -393
  200. package/dist/error-registry.js.map +0 -1
  201. package/dist/errors.js +0 -173
  202. package/dist/errors.js.map +0 -1
  203. package/dist/hooks/handlers/agent-hooks.js +0 -106
  204. package/dist/hooks/handlers/agent-hooks.js.map +0 -1
  205. package/dist/hooks/handlers/context-hooks.js +0 -111
  206. package/dist/hooks/handlers/context-hooks.js.map +0 -1
  207. package/dist/hooks/handlers/error-hooks.js +0 -52
  208. package/dist/hooks/handlers/error-hooks.js.map +0 -1
  209. package/dist/hooks/handlers/file-hooks.js +0 -104
  210. package/dist/hooks/handlers/file-hooks.js.map +0 -1
  211. package/dist/hooks/handlers/handler-helpers.js +0 -61
  212. package/dist/hooks/handlers/handler-helpers.js.map +0 -1
  213. package/dist/hooks/handlers/index.js +0 -28
  214. package/dist/hooks/handlers/index.js.map +0 -1
  215. package/dist/hooks/handlers/memory-bridge-refresh.js +0 -42
  216. package/dist/hooks/handlers/memory-bridge-refresh.js.map +0 -1
  217. package/dist/hooks/handlers/notification-hooks.js +0 -62
  218. package/dist/hooks/handlers/notification-hooks.js.map +0 -1
  219. package/dist/hooks/handlers/session-hooks.js +0 -142
  220. package/dist/hooks/handlers/session-hooks.js.map +0 -1
  221. package/dist/hooks/handlers/task-hooks.js +0 -65
  222. package/dist/hooks/handlers/task-hooks.js.map +0 -1
  223. package/dist/hooks/handlers/work-capture-hooks.js +0 -165
  224. package/dist/hooks/handlers/work-capture-hooks.js.map +0 -1
  225. package/dist/hooks/index.js +0 -13
  226. package/dist/hooks/index.js.map +0 -1
  227. package/dist/hooks/payload-schemas.js +0 -220
  228. package/dist/hooks/payload-schemas.js.map +0 -1
  229. package/dist/hooks/provider-hooks.js +0 -66
  230. package/dist/hooks/provider-hooks.js.map +0 -1
  231. package/dist/hooks/registry.js +0 -229
  232. package/dist/hooks/registry.js.map +0 -1
  233. package/dist/hooks/types.js +0 -66
  234. package/dist/hooks/types.js.map +0 -1
  235. package/dist/hooks.js +0 -136
  236. package/dist/hooks.js.map +0 -1
  237. package/dist/init.js +0 -851
  238. package/dist/init.js.map +0 -1
  239. package/dist/inject/index.js +0 -82
  240. package/dist/inject/index.js.map +0 -1
  241. package/dist/injection.js +0 -343
  242. package/dist/injection.js.map +0 -1
  243. package/dist/intelligence/adaptive-validation.js +0 -497
  244. package/dist/intelligence/adaptive-validation.js.map +0 -1
  245. package/dist/intelligence/impact.js +0 -675
  246. package/dist/intelligence/impact.js.map +0 -1
  247. package/dist/intelligence/index.js +0 -22
  248. package/dist/intelligence/index.js.map +0 -1
  249. package/dist/intelligence/patterns.js +0 -492
  250. package/dist/intelligence/patterns.js.map +0 -1
  251. package/dist/intelligence/prediction.js +0 -499
  252. package/dist/intelligence/prediction.js.map +0 -1
  253. package/dist/intelligence/types.js +0 -13
  254. package/dist/intelligence/types.js.map +0 -1
  255. package/dist/internal.js +0 -306
  256. package/dist/internal.js.map +0 -1
  257. package/dist/issue/create.js +0 -121
  258. package/dist/issue/create.js.map +0 -1
  259. package/dist/issue/diagnostics.js +0 -59
  260. package/dist/issue/diagnostics.js.map +0 -1
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  262. package/dist/issue/index.js.map +0 -1
  263. package/dist/issue/template-parser.js +0 -267
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  265. package/dist/json-schema-validator.js +0 -76
  266. package/dist/json-schema-validator.js.map +0 -1
  267. package/dist/lib/index.js +0 -11
  268. package/dist/lib/index.js.map +0 -1
  269. package/dist/lib/retry.js +0 -152
  270. package/dist/lib/retry.js.map +0 -1
  271. package/dist/lib/tree-sitter-languages.js +0 -71
  272. package/dist/lib/tree-sitter-languages.js.map +0 -1
  273. package/dist/lifecycle/chain-composition.js +0 -152
  274. package/dist/lifecycle/chain-composition.js.map +0 -1
  275. package/dist/lifecycle/chain-store.js +0 -246
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  277. package/dist/lifecycle/consolidate-rcasd.js +0 -352
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  279. package/dist/lifecycle/default-chain.js +0 -176
  280. package/dist/lifecycle/default-chain.js.map +0 -1
  281. package/dist/lifecycle/evidence.js +0 -180
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  285. package/dist/lifecycle/index.js +0 -756
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  287. package/dist/lifecycle/pipeline.js +0 -656
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  289. package/dist/lifecycle/rcasd-index.js +0 -326
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@@ -1,151 +0,0 @@
1
- /**
2
- * Unified migration manager for SQLite databases.
3
- *
4
- * Consolidates duplicated reconciliation, bootstrap, retry, and column-safety
5
- * logic that was previously copy-pasted between sqlite.ts (tasks.db) and
6
- * brain-sqlite.ts (brain.db). Both modules now delegate to these shared functions.
7
- *
8
- * @task T132
9
- * @see https://github.com/anthropics/cleo/issues/82
10
- * @see https://github.com/anthropics/cleo/issues/63
11
- * @see https://github.com/anthropics/cleo/issues/65
12
- */
13
- import { copyFileSync, existsSync } from 'node:fs';
14
- import { readMigrationFiles } from 'drizzle-orm/migrator';
15
- import { migrate } from 'drizzle-orm/node-sqlite/migrator';
16
- import { getLogger } from '../logger.js';
17
- /** Migration retry constants for SQLITE_BUSY handling (T5185). */
18
- const MAX_MIGRATION_RETRIES = 5;
19
- const MIGRATION_RETRY_BASE_DELAY_MS = 100;
20
- const MIGRATION_RETRY_MAX_DELAY_MS = 2000;
21
- /**
22
- * Check whether a table exists in a SQLite database.
23
- */
24
- export function tableExists(nativeDb, tableName) {
25
- const result = nativeDb
26
- .prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?")
27
- .get(tableName);
28
- return !!result;
29
- }
30
- /**
31
- * Check if an error is a SQLite BUSY error (database locked by another process).
32
- * node:sqlite throws native Error with message containing the SQLite error code.
33
- * @task T5185
34
- */
35
- export function isSqliteBusy(err) {
36
- if (!(err instanceof Error))
37
- return false;
38
- const msg = err.message.toLowerCase();
39
- return msg.includes('sqlite_busy') || msg.includes('database is locked');
40
- }
41
- /**
42
- * Create a pre-migration safety backup of the database file.
43
- *
44
- * Only creates the backup once (idempotent). Non-fatal on failure.
45
- */
46
- export function createSafetyBackup(dbPath) {
47
- const backupPath = dbPath.replace(/\.db$/, '-pre-cleo.db.bak');
48
- if (!existsSync(backupPath)) {
49
- try {
50
- copyFileSync(dbPath, backupPath);
51
- }
52
- catch {
53
- /* non-fatal */
54
- }
55
- }
56
- }
57
- /**
58
- * Bootstrap and reconcile the Drizzle migration journal.
59
- *
60
- * Handles three scenarios:
61
- * 1. Tables exist but no __drizzle_migrations — bootstrap baseline as applied
62
- * 2. Journal has orphaned hashes (from older CLEO version) — clear and re-mark all as applied
63
- * 3. Journal is healthy — no-op
64
- *
65
- * @param nativeDb - Native SQLite database handle
66
- * @param migrationsFolder - Path to the drizzle migrations folder
67
- * @param existenceTable - A table name used to detect if the DB has data (e.g., 'tasks' or 'brain_decisions')
68
- * @param logSubsystem - Logger subsystem name for reconciliation warnings
69
- */
70
- export function reconcileJournal(nativeDb, migrationsFolder, existenceTable, logSubsystem) {
71
- // Scenario 1: Tables exist but no migration journal — bootstrap baseline
72
- if (tableExists(nativeDb, existenceTable) && !tableExists(nativeDb, '__drizzle_migrations')) {
73
- const migrations = readMigrationFiles({ migrationsFolder });
74
- const baseline = migrations[0];
75
- if (baseline) {
76
- nativeDb.exec(`
77
- CREATE TABLE IF NOT EXISTS "__drizzle_migrations" (
78
- id SERIAL PRIMARY KEY,
79
- hash text NOT NULL,
80
- created_at numeric
81
- )
82
- `);
83
- nativeDb.exec(`INSERT INTO "__drizzle_migrations" ("hash", "created_at") VALUES ('${baseline.hash}', ${baseline.folderMillis})`);
84
- }
85
- }
86
- // Scenario 2: Journal has orphaned entries from a previous CLEO version
87
- if (tableExists(nativeDb, '__drizzle_migrations') && tableExists(nativeDb, existenceTable)) {
88
- const localMigrations = readMigrationFiles({ migrationsFolder });
89
- const localHashes = new Set(localMigrations.map((m) => m.hash));
90
- const dbEntries = nativeDb.prepare('SELECT hash FROM "__drizzle_migrations"').all();
91
- const hasOrphanedEntries = dbEntries.some((e) => !localHashes.has(e.hash));
92
- if (hasOrphanedEntries) {
93
- const log = getLogger(logSubsystem);
94
- log.warn({ orphaned: dbEntries.filter((e) => !localHashes.has(e.hash)).length }, `Detected stale migration journal entries from a previous CLEO version. Reconciling.`);
95
- nativeDb.exec('DELETE FROM "__drizzle_migrations"');
96
- for (const m of localMigrations) {
97
- nativeDb.exec(`INSERT INTO "__drizzle_migrations" ("hash", "created_at") VALUES ('${m.hash}', ${m.folderMillis})`);
98
- }
99
- }
100
- }
101
- }
102
- /**
103
- * Run Drizzle migrations with SQLITE_BUSY retry and exponential backoff.
104
- *
105
- * @param db - Drizzle database instance
106
- * @param migrationsFolder - Path to the drizzle migrations folder
107
- */
108
- // biome-ignore lint/suspicious/noExplicitAny: Drizzle's NodeSQLiteDatabase is generic — accepting any schema avoids coupling to a specific schema type
109
- export function migrateWithRetry(db, migrationsFolder) {
110
- for (let attempt = 1; attempt <= MAX_MIGRATION_RETRIES; attempt++) {
111
- try {
112
- migrate(db, { migrationsFolder });
113
- return;
114
- }
115
- catch (err) {
116
- if (!isSqliteBusy(err) || attempt === MAX_MIGRATION_RETRIES) {
117
- throw err;
118
- }
119
- const delay = Math.min(MIGRATION_RETRY_BASE_DELAY_MS * 2 ** (attempt - 1) * (1 + Math.random() * 0.5), MIGRATION_RETRY_MAX_DELAY_MS);
120
- Atomics.wait(new Int32Array(new SharedArrayBuffer(4)), 0, 0, Math.round(delay));
121
- }
122
- }
123
- }
124
- /**
125
- * Ensure all required columns exist on a table.
126
- *
127
- * Uses PRAGMA table_info to inspect the schema and adds any missing columns
128
- * via ALTER TABLE ADD COLUMN. Safety net for databases where Drizzle migrations
129
- * could not run due to journal corruption or version skew.
130
- *
131
- * @param nativeDb - Native SQLite database handle
132
- * @param tableName - Table to check (e.g., 'tasks')
133
- * @param requiredColumns - Columns that must exist
134
- * @param logSubsystem - Logger subsystem name
135
- */
136
- export function ensureColumns(nativeDb, tableName, requiredColumns, logSubsystem) {
137
- if (!tableExists(nativeDb, tableName))
138
- return;
139
- if (requiredColumns.length === 0)
140
- return;
141
- const columns = nativeDb.prepare(`PRAGMA table_info(${tableName})`).all();
142
- const existingCols = new Set(columns.map((c) => c.name));
143
- for (const req of requiredColumns) {
144
- if (!existingCols.has(req.name)) {
145
- const log = getLogger(logSubsystem);
146
- log.warn({ column: req.name }, `Adding missing column ${tableName}.${req.name} via ALTER TABLE`);
147
- nativeDb.exec(`ALTER TABLE ${tableName} ADD COLUMN ${req.name} ${req.ddl}`);
148
- }
149
- }
150
- }
151
- //# sourceMappingURL=migration-manager.js.map
@@ -1 +0,0 @@
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