@cleocode/core 2026.3.76 → 2026.4.0

package/dist/store/cache.js.map

@@ -0,0 +1 @@
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package/dist/store/chain-schema.js

@@ -0,0 +1,51 @@
+/**
+ * Drizzle ORM schema for WarpChain storage in tasks.db.
+ *
+ * Tables: warp_chains, warp_chain_instances
+ * Stores chain definitions and runtime instances bound to epics.
+ *
+ * @task T5403
+ */
+import { sql } from 'drizzle-orm';
+import { index, integer, sqliteTable, text } from 'drizzle-orm/sqlite-core';
+/** Chain instance status values. */
+export const WARP_CHAIN_INSTANCE_STATUSES = [
+    'pending',
+    'active',
+    'completed',
+    'failed',
+    'cancelled',
+];
+// === WARP_CHAINS TABLE ===
+/** Stored WarpChain definitions (serialized as JSON). */
+export const warpChains = sqliteTable('warp_chains', {
+    id: text('id').primaryKey(),
+    name: text('name').notNull(),
+    version: text('version').notNull(),
+    description: text('description'),
+    definition: text('definition').notNull(), // JSON-serialized WarpChain
+    validated: integer('validated', { mode: 'boolean' }).default(false),
+    createdAt: text('created_at').default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at').default(sql `(datetime('now'))`),
+}, (table) => [index('idx_warp_chains_name').on(table.name)]);
+// === WARP_CHAIN_INSTANCES TABLE ===
+/** Runtime chain instances bound to epics. */
+export const warpChainInstances = sqliteTable('warp_chain_instances', {
+    id: text('id').primaryKey(),
+    chainId: text('chain_id')
+        .notNull()
+        .references(() => warpChains.id, { onDelete: 'cascade' }),
+    epicId: text('epic_id').notNull(),
+    variables: text('variables'), // JSON
+    stageToTask: text('stage_to_task'), // JSON
+    status: text('status').notNull().default('pending'),
+    currentStage: text('current_stage'),
+    gateResults: text('gate_results'), // JSON array of GateResult
+    createdAt: text('created_at').default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at').default(sql `(datetime('now'))`),
+}, (table) => [
+    index('idx_warp_instances_chain').on(table.chainId),
+    index('idx_warp_instances_epic').on(table.epicId),
+    index('idx_warp_instances_status').on(table.status),
+]);
+//# sourceMappingURL=chain-schema.js.map

package/dist/store/chain-schema.js.map

@@ -0,0 +1 @@
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package/dist/store/converters.js

@@ -0,0 +1,124 @@
+/**
+ * Shared row <-> domain conversion functions for SQLite store modules.
+ *
+ * Eliminates duplication across sqlite-data-accessor.ts, task-store.ts,
+ * and session-store.ts.
+ */
+import { safeParseJson, safeParseJsonArray } from './parsers.js';
+/** Convert a database TaskRow to a domain Task object. */
+export function rowToTask(row) {
+    return {
+        id: row.id,
+        title: row.title,
+        status: row.status,
+        priority: row.priority,
+        type: row.type ?? undefined,
+        parentId: row.parentId ?? undefined,
+        phase: row.phase ?? undefined,
+        size: row.size ?? undefined,
+        position: row.position ?? undefined,
+        positionVersion: row.positionVersion ?? undefined,
+        description: row.description ?? '',
+        labels: safeParseJsonArray(row.labelsJson),
+        notes: safeParseJsonArray(row.notesJson),
+        acceptance: safeParseJsonArray(row.acceptanceJson),
+        files: safeParseJsonArray(row.filesJson),
+        depends: undefined, // Populated separately from task_dependencies
+        origin: row.origin ?? undefined,
+        blockedBy: row.blockedBy ?? undefined,
+        epicLifecycle: row.epicLifecycle ?? undefined,
+        noAutoComplete: row.noAutoComplete ?? undefined,
+        createdAt: row.createdAt,
+        updatedAt: row.updatedAt ?? undefined,
+        completedAt: row.completedAt ?? undefined,
+        cancelledAt: row.cancelledAt ?? undefined,
+        cancellationReason: row.cancellationReason ?? undefined,
+        verification: row.verificationJson ? safeParseJson(row.verificationJson) : undefined,
+        provenance: row.createdBy || row.modifiedBy || row.sessionId
+            ? {
+                createdBy: row.createdBy ?? null,
+                modifiedBy: row.modifiedBy ?? null,
+                sessionId: row.sessionId ?? null,
+            }
+            : undefined,
+        pipelineStage: row.pipelineStage ?? undefined,
+        assignee: row.assignee ?? undefined,
+    };
+}
+/** Convert a domain Task to a database row for insert/upsert. */
+export function taskToRow(task) {
+    return {
+        id: task.id,
+        title: task.title ?? '',
+        description: task.description ?? null,
+        status: task.status ?? 'pending',
+        priority: task.priority ?? 'medium',
+        type: task.type ?? null,
+        parentId: task.parentId ?? null,
+        phase: task.phase ?? null,
+        size: task.size ?? null,
+        position: task.position ?? null,
+        positionVersion: task.positionVersion ?? 0,
+        labelsJson: task.labels ? JSON.stringify(task.labels) : '[]',
+        notesJson: task.notes ? JSON.stringify(task.notes) : '[]',
+        acceptanceJson: task.acceptance ? JSON.stringify(task.acceptance) : '[]',
+        filesJson: task.files ? JSON.stringify(task.files) : '[]',
+        origin: task.origin ?? null,
+        blockedBy: task.blockedBy ?? null,
+        epicLifecycle: task.epicLifecycle ?? null,
+        noAutoComplete: task.noAutoComplete ?? null,
+        createdAt: task.createdAt ?? new Date().toISOString(),
+        updatedAt: task.updatedAt ?? null,
+        completedAt: task.completedAt ?? null,
+        cancelledAt: task.cancelledAt ?? null,
+        cancellationReason: task.cancellationReason ?? null,
+        verificationJson: task.verification ? JSON.stringify(task.verification) : null,
+        createdBy: task.provenance?.createdBy ?? null,
+        modifiedBy: task.provenance?.modifiedBy ?? null,
+        sessionId: task.provenance?.sessionId ?? null,
+        pipelineStage: task.pipelineStage ?? null,
+        assignee: task.assignee ?? null,
+    };
+}
+/** Convert a domain Task to a row suitable for archived tasks. */
+export function archivedTaskToRow(task) {
+    const row = taskToRow(task);
+    row.status = 'archived';
+    if (!row['archivedAt']) {
+        row['archivedAt'] = task.completedAt ?? new Date().toISOString();
+    }
+    return row;
+}
+/** Convert a SessionRow to a domain Session. */
+export function rowToSession(row) {
+    const taskWork = {
+        taskId: row.currentTask ?? null,
+        setAt: row.taskStartedAt ?? null,
+    };
+    return {
+        id: row.id,
+        name: row.name,
+        status: row.status,
+        scope: (safeParseJson(row.scopeJson) ?? { type: 'global' }),
+        taskWork,
+        startedAt: row.startedAt,
+        endedAt: row.endedAt ?? undefined,
+        agent: row.agent ?? undefined,
+        notes: safeParseJsonArray(row.notesJson),
+        tasksCompleted: safeParseJsonArray(row.tasksCompletedJson),
+        tasksCreated: safeParseJsonArray(row.tasksCreatedJson),
+        handoffJson: row.handoffJson ?? null,
+        // Session chain fields (T4959)
+        previousSessionId: row.previousSessionId ?? null,
+        nextSessionId: row.nextSessionId ?? null,
+        agentIdentifier: row.agentIdentifier ?? null,
+        handoffConsumedAt: row.handoffConsumedAt ?? null,
+        handoffConsumedBy: row.handoffConsumedBy ?? null,
+        debriefJson: row.debriefJson ?? null,
+        // Session stats fields
+        stats: row.statsJson ? safeParseJson(row.statsJson) : undefined,
+        resumeCount: row.resumeCount ?? undefined,
+        gradeMode: row.gradeMode ? Boolean(row.gradeMode) : undefined,
+    };
+}
+//# sourceMappingURL=converters.js.map

package/dist/store/converters.js.map

@@ -0,0 +1 @@
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package/dist/store/cross-db-cleanup.d.ts

@@ -89,5 +89,39 @@ export declare function taskExistsInTasksDb(taskId: string, tasksDb: Awaited<Ret
  * if (await sessionExistsInTasksDb('ses_abc', db)) { /* safe to reference *\/ }
  * ```
  */
+/**
+ * Reconcile orphaned cross-DB references in brain.db.
+ *
+ * Scans brain.db for references to tasks/sessions that no longer exist in
+ * tasks.db and cleans them up:
+ * - brain_decisions with stale context_task_id or context_epic_id → nullify
+ * - brain_observations with stale source_session_id → nullify
+ * - brain_memory_links with stale task_id → delete row
+ *
+ * This is the background reconciliation pass mentioned in the module doc.
+ * Safe to run at any frequency — idempotent.
+ *
+ * @param cwd - Optional working directory
+ * @returns Counts of orphaned references cleaned up
+ */
+export declare function reconcileOrphanedRefs(cwd?: string): Promise<{
+    decisionsFixed: number;
+    observationsFixed: number;
+    linksRemoved: number;
+}>;
 export declare function sessionExistsInTasksDb(sessionId: string, tasksDb: Awaited<ReturnType<typeof import('./sqlite.js').getDb>>): Promise<boolean>;
+/**
+ * Verify an agent exists in signaldock.db before creating cross-DB references.
+ * Returns true if the agent_id exists in signaldock.db agents table.
+ *
+ * Provides write-guard for agent_instances and agent_error_log in tasks.db
+ * that reference agents whose identity lives in signaldock.db.
+ *
+ * @param agentId - Agent slug (e.g. 'cleo-db-lead') to verify
+ * @param cwd - Optional working directory
+ * @returns True if the agent exists in signaldock.db
+ *
+ * @task T238
+ */
+export declare function agentExistsInSignaldockDb(agentId: string, cwd?: string): Promise<boolean>;
 //# sourceMappingURL=cross-db-cleanup.d.ts.map

package/dist/store/cross-db-cleanup.d.ts.map

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package/dist/store/cross-db-cleanup.js

@@ -0,0 +1,169 @@
+/**
+ * Cross-database cleanup hooks for brain.db → tasks.db soft FK enforcement.
+ *
+ * SQLite does not support foreign key constraints across database connections.
+ * This module provides application-layer guards that maintain referential
+ * integrity between brain.db and tasks.db after destructive operations.
+ *
+ * Implements the recommendations from T030 audit (XFKB-001 through XFKB-005).
+ *
+ * @task T033
+ * @epic T029
+ */
+import { eq, or } from 'drizzle-orm';
+import * as brainSchema from './brain-schema.js';
+import { getBrainDb } from './brain-sqlite.js';
+/**
+ * Clean up brain.db references after a task is deleted from tasks.db.
+ *
+ * Handles:
+ * - XFKB-001/002: Nullify brain_decisions.context_epic_id / context_task_id
+ * - XFKB-003: Delete brain_memory_links rows where task_id matches
+ * - XFKB-005: Delete brain_page_nodes with id='task:<taskId>' and cascade brain_page_edges
+ *
+ * This is a best-effort cleanup — brain.db is a cognitive store and minor
+ * staleness is preferable to failing task deletions due to brain.db errors.
+ *
+ * @remarks
+ * Best-effort: failures in brain.db cleanup do not propagate to the caller.
+ * A background reconciliation pass can clean up any residual stale refs.
+ *
+ * @param taskId - The ID of the task being deleted from tasks.db
+ * @param cwd - Optional working directory
+ *
+ * @example
+ * ```ts
+ * await cleanupBrainRefsOnTaskDelete('T042');
+ * ```
+ */
+export async function cleanupBrainRefsOnTaskDelete(taskId, cwd) {
+    let brainDb = null;
+    try {
+        brainDb = await getBrainDb(cwd);
+    }
+    catch {
+        // brain.db may not be initialized — non-fatal
+        return;
+    }
+    const nodeId = `task:${taskId}`;
+    try {
+        // XFKB-001/002: Nullify context references in brain_decisions
+        await brainDb
+            .update(brainSchema.brainDecisions)
+            .set({ contextEpicId: null })
+            .where(eq(brainSchema.brainDecisions.contextEpicId, taskId));
+        await brainDb
+            .update(brainSchema.brainDecisions)
+            .set({ contextTaskId: null })
+            .where(eq(brainSchema.brainDecisions.contextTaskId, taskId));
+        // XFKB-003: Delete brain_memory_links rows referencing this task
+        await brainDb
+            .delete(brainSchema.brainMemoryLinks)
+            .where(eq(brainSchema.brainMemoryLinks.taskId, taskId));
+        // XFKB-005: Delete brain_page_edges first (FK cascade not available cross-DB),
+        //            then delete brain_page_nodes for this task
+        await brainDb
+            .delete(brainSchema.brainPageEdges)
+            .where(or(eq(brainSchema.brainPageEdges.fromId, nodeId), eq(brainSchema.brainPageEdges.toId, nodeId)));
+        await brainDb
+            .delete(brainSchema.brainPageNodes)
+            .where(eq(brainSchema.brainPageNodes.id, nodeId));
+    }
+    catch {
+        // Non-fatal: log silently. Brain.db cleanup is best-effort.
+        // A background reconciliation pass can clean up any residual stale refs.
+    }
+}
+/**
+ * Clean up brain.db references after a session is deleted from tasks.db.
+ *
+ * Handles:
+ * - XFKB-004: Nullify brain_observations.source_session_id where it matches
+ *
+ * @remarks
+ * Best-effort: failures do not propagate. brain.db may not be initialised.
+ *
+ * @param sessionId - The ID of the session being deleted from tasks.db
+ * @param cwd - Optional working directory
+ *
+ * @example
+ * ```ts
+ * await cleanupBrainRefsOnSessionDelete('ses_20260321_abc');
+ * ```
+ */
+export async function cleanupBrainRefsOnSessionDelete(sessionId, cwd) {
+    let brainDb = null;
+    try {
+        brainDb = await getBrainDb(cwd);
+    }
+    catch {
+        return;
+    }
+    try {
+        // XFKB-004: Nullify source_session_id in brain_observations
+        await brainDb
+            .update(brainSchema.brainObservations)
+            .set({ sourceSessionId: null })
+            .where(eq(brainSchema.brainObservations.sourceSessionId, sessionId));
+    }
+    catch {
+        // Non-fatal best-effort cleanup
+    }
+}
+/**
+ * Verify a task ID exists in tasks.db before writing a cross-DB reference to brain.db.
+ * Returns true if the task exists, false otherwise.
+ *
+ * Provides write-guard for XFKB-001/002/003 on brain.db insert.
+ *
+ * @remarks
+ * Used as a write-guard before inserting cross-DB references into brain.db.
+ *
+ * @param taskId - Task ID to verify
+ * @param tasksDb - The tasks.db drizzle instance
+ * @returns True if the task exists in tasks.db
+ *
+ * @example
+ * ```ts
+ * if (await taskExistsInTasksDb('T042', db)) { /* safe to reference *\/ }
+ * ```
+ */
+export async function taskExistsInTasksDb(taskId, tasksDb) {
+    const { tasks } = await import('./tasks-schema.js');
+    const { eq: eqOp } = await import('drizzle-orm');
+    const result = await tasksDb
+        .select({ id: tasks.id })
+        .from(tasks)
+        .where(eqOp(tasks.id, taskId))
+        .all();
+    return result.length > 0;
+}
+/**
+ * Verify a session ID exists in tasks.db before writing a cross-DB reference to brain.db.
+ * Returns true if the session exists, false otherwise.
+ *
+ * Provides write-guard for XFKB-004 on brain.db insert.
+ *
+ * @remarks
+ * Used as a write-guard before inserting cross-DB references into brain.db.
+ *
+ * @param sessionId - Session ID to verify
+ * @param tasksDb - The tasks.db drizzle instance
+ * @returns True if the session exists in tasks.db
+ *
+ * @example
+ * ```ts
+ * if (await sessionExistsInTasksDb('ses_abc', db)) { /* safe to reference *\/ }
+ * ```
+ */
+export async function sessionExistsInTasksDb(sessionId, tasksDb) {
+    const { sessions } = await import('./tasks-schema.js');
+    const { eq: eqOp } = await import('drizzle-orm');
+    const result = await tasksDb
+        .select({ id: sessions.id })
+        .from(sessions)
+        .where(eqOp(sessions.id, sessionId))
+        .all();
+    return result.length > 0;
+}
+//# sourceMappingURL=cross-db-cleanup.js.map

package/dist/store/cross-db-cleanup.js.map

@@ -0,0 +1 @@
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package/dist/store/data-accessor.js

@@ -0,0 +1,26 @@
+/**
+ * DataAccessor re-export + factory functions.
+ *
+ * The DataAccessor interface is defined in @cleocode/contracts.
+ * This module re-exports it and provides the concrete SQLite factory.
+ *
+ * @epic T4454
+ */
+/**
+ * Create a DataAccessor for the given working directory.
+ * Always creates a SQLite accessor (ADR-006 canonical storage).
+ *
+ * ALL accessors returned are safety-enabled by default via SafetyDataAccessor wrapper.
+ * Use CLEO_DISABLE_SAFETY=true to bypass (emergency only).
+ */
+export async function createDataAccessor(_engine, cwd) {
+    const { createSqliteDataAccessor } = await import('./sqlite-data-accessor.js');
+    const inner = await createSqliteDataAccessor(cwd);
+    const { wrapWithSafety } = await import('./safety-data-accessor.js');
+    return wrapWithSafety(inner, cwd);
+}
+/** Convenience: get a DataAccessor with auto-detected engine. */
+export async function getAccessor(cwd) {
+    return createDataAccessor(undefined, cwd);
+}
+//# sourceMappingURL=data-accessor.js.map

package/dist/store/data-accessor.js.map

@@ -0,0 +1 @@
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