@cleocode/core 2026.3.74 → 2026.3.76

package/dist/store/atomic.js

@@ -1,167 +0,0 @@
-/**
- * Atomic file write operations using write-file-atomic.
- * Ensures writes are crash-safe: temp file -> validate -> rename.
- * @epic T4454
- * @task T4457
- * @task T4721 - Added atomic database operations
- */
-import { existsSync } from 'node:fs';
-import { mkdir, readFile, rename, unlink } from 'node:fs/promises';
-import { dirname } from 'node:path';
-import { ExitCode } from '@cleocode/contracts';
-import writeFileAtomic from 'write-file-atomic';
-import { CleoError } from '../errors.js';
-/**
- * Write data to a file atomically.
- * Creates parent directories if they don't exist.
- * Uses write-file-atomic for crash-safe writes (temp file -> rename).
- */
-export async function atomicWrite(filePath, data, options) {
-    try {
-        await mkdir(dirname(filePath), { recursive: true });
-        await writeFileAtomic(filePath, data, {
-            encoding: options?.encoding ?? 'utf8',
-            mode: options?.mode,
-        });
-    }
-    catch (err) {
-        throw new CleoError(ExitCode.FILE_ERROR, `Atomic write failed: ${filePath}`, { cause: err });
-    }
-}
-/**
- * Read a file and return its contents.
- * Returns null if the file does not exist.
- */
-export async function safeReadFile(filePath) {
-    try {
-        return await readFile(filePath, 'utf8');
-    }
-    catch (err) {
-        if (err instanceof Error && 'code' in err && err.code === 'ENOENT') {
-            return null;
-        }
-        throw new CleoError(ExitCode.FILE_ERROR, `Failed to read: ${filePath}`, { cause: err });
-    }
-}
-/**
- * Write JSON data atomically with consistent formatting.
- */
-export async function atomicWriteJson(filePath, data, options) {
-    const json = JSON.stringify(data, null, options?.indent ?? 2) + '\n';
-    await atomicWrite(filePath, json);
-}
-/**
- * Perform atomic database migration using rename operations.
- *
- * Pattern:
- *   1. Write new database to temp file (tasks.db.new)
- *   2. Validate temp database integrity
- *   3. Rename existing tasks.db → tasks.db.backup
- *   4. Rename temp → tasks.db (atomic)
- *   5. Only delete backup on success
- *
- * @param dbPath - Path to the database file (e.g., tasks.db)
- * @param tempPath - Path to temporary database (e.g., tasks.db.new)
- * @param validateFn - Async function to validate the temp database
- * @returns Result with paths and success status
- */
-export async function atomicDatabaseMigration(dbPath, tempPath, validateFn) {
-    const backupPath = `${dbPath}.backup`;
-    try {
-        // Step 1: Validate temp database exists
-        if (!existsSync(tempPath)) {
-            throw new Error(`Temp database not found: ${tempPath}`);
-        }
-        // Step 2: Validate the temp database integrity
-        const isValid = await validateFn(tempPath);
-        if (!isValid) {
-            throw new Error(`Temp database validation failed: ${tempPath}`);
-        }
-        // Step 3: If existing database exists, rename to backup
-        if (existsSync(dbPath)) {
-            await rename(dbPath, backupPath);
-        }
-        // Step 4: Atomically rename temp to final (atomic on POSIX systems)
-        await rename(tempPath, dbPath);
-        return {
-            success: true,
-            tempPath,
-            backupPath: existsSync(backupPath) ? backupPath : undefined,
-        };
-    }
-    catch (err) {
-        return {
-            success: false,
-            tempPath,
-            backupPath: existsSync(backupPath) ? backupPath : undefined,
-            error: String(err),
-        };
-    }
-}
-/**
- * Restore database from backup after failed migration.
- *
- * @param dbPath - Path to the database file
- * @param backupPath - Path to the backup file
- * @returns true if restore succeeded
- */
-export async function restoreDatabaseFromBackup(dbPath, backupPath) {
-    try {
-        if (!existsSync(backupPath)) {
-            return false;
-        }
-        // If a partial database exists, remove it
-        if (existsSync(dbPath)) {
-            await unlink(dbPath);
-        }
-        // Restore from backup
-        await rename(backupPath, dbPath);
-        return true;
-    }
-    catch {
-        return false;
-    }
-}
-/**
- * Clean up migration artifacts after successful migration.
- *
- * @param backupPath - Path to backup file to delete
- * @returns true if cleanup succeeded
- */
-export async function cleanupMigrationArtifacts(backupPath) {
-    try {
-        if (existsSync(backupPath)) {
-            await unlink(backupPath);
-        }
-        return true;
-    }
-    catch {
-        return false;
-    }
-}
-/**
- * Validate SQLite database integrity by attempting to open it.
- *
- * @param dbPath - Path to database file
- * @returns true if database is valid
- */
-export async function validateSqliteDatabase(dbPath) {
-    try {
-        const { createRequire } = await import('node:module');
-        const _req = createRequire(import.meta.url);
-        const { DatabaseSync } = _req('node:sqlite');
-        const db = new DatabaseSync(dbPath, { readOnly: true });
-        const integrityRow = db.prepare('PRAGMA integrity_check').get();
-        const isOk = integrityRow?.integrity_check === 'ok';
-        const tableRow = db
-            .prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='tasks'")
-            .get();
-        const hasTasksTable = !!tableRow;
-        db.close();
-        return isOk && hasTasksTable;
-    }
-    catch {
-        return false;
-    }
-}
-//# sourceMappingURL=atomic.js.map

package/dist/store/atomic.js.map

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package/dist/store/backup.js

@@ -1,94 +0,0 @@
-/**
- * Numbered backup system for CLEO data files.
- * Maintains a rotating window of recent backups for rollback protection.
- * @epic T4454
- * @task T4457
- */
-import { copyFile, rename as fsRename, mkdir, readdir, stat, unlink } from 'node:fs/promises';
-import { basename, join } from 'node:path';
-import { ExitCode } from '@cleocode/contracts';
-import { CleoError } from '../errors.js';
-const DEFAULT_MAX_BACKUPS = 5;
-/**
- * Create a numbered backup of a file.
- * Rotates existing backups (file.1 -> file.2, etc.) and removes excess.
- */
-export async function createBackup(filePath, backupDir, maxBackups = DEFAULT_MAX_BACKUPS) {
-    try {
-        await mkdir(backupDir, { recursive: true });
-        const fileName = basename(filePath);
-        // Check if source file exists
-        try {
-            await stat(filePath);
-        }
-        catch {
-            throw new CleoError(ExitCode.FILE_ERROR, `Cannot backup: source file not found: ${filePath}`);
-        }
-        // Rotate existing backups (shift numbers up)
-        for (let i = maxBackups; i >= 1; i--) {
-            const current = join(backupDir, `${fileName}.${i}`);
-            if (i === maxBackups) {
-                // Remove oldest backup
-                try {
-                    await unlink(current);
-                }
-                catch {
-                    // File may not exist
-                }
-            }
-            else {
-                const next = join(backupDir, `${fileName}.${i + 1}`);
-                try {
-                    await stat(current);
-                    await fsRename(current, next);
-                }
-                catch {
-                    // File may not exist
-                }
-            }
-        }
-        // Create new backup as .1
-        const backupPath = join(backupDir, `${fileName}.1`);
-        await copyFile(filePath, backupPath);
-        return backupPath;
-    }
-    catch (err) {
-        if (err instanceof CleoError)
-            throw err;
-        throw new CleoError(ExitCode.FILE_ERROR, `Backup failed for: ${filePath}`, { cause: err });
-    }
-}
-/**
- * List existing backups for a file, sorted by number (newest first).
- */
-export async function listBackups(fileName, backupDir) {
-    try {
-        const entries = await readdir(backupDir);
-        const prefix = `${fileName}.`;
-        return entries
-            .filter((e) => e.startsWith(prefix) && /^\d+$/.test(e.slice(prefix.length)))
-            .sort((a, b) => {
-            const numA = parseInt(a.slice(prefix.length), 10);
-            const numB = parseInt(b.slice(prefix.length), 10);
-            return numA - numB;
-        })
-            .map((e) => join(backupDir, e));
-    }
-    catch {
-        return [];
-    }
-}
-/**
- * Restore a file from its most recent backup.
- * Returns the path of the backup that was restored.
- */
-export async function restoreFromBackup(fileName, backupDir, targetPath) {
-    const backups = await listBackups(fileName, backupDir);
-    if (backups.length === 0) {
-        throw new CleoError(ExitCode.NOT_FOUND, `No backups found for: ${fileName}`);
-    }
-    const newest = backups[0];
-    await copyFile(newest, targetPath);
-    return newest;
-}
-//# sourceMappingURL=backup.js.map

package/dist/store/backup.js.map

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package/dist/store/brain-accessor.js

@@ -1,397 +0,0 @@
-/**
- * Data accessor for brain.db — CRUD operations for decisions, patterns,
- * learnings, and memory links.
- *
- * Wraps drizzle ORM queries over the brain.db singleton. All methods are
- * async (sqlite-proxy) and return typed rows from brain-schema.ts.
- *
- * @epic T5149
- * @task T5128
- */
-import { and, asc, desc, eq, gte, or } from 'drizzle-orm';
-import * as brainSchema from './brain-schema.js';
-import { getBrainDb } from './brain-sqlite.js';
-export class BrainDataAccessor {
-    db;
-    constructor(db) {
-        this.db = db;
-    }
-    // =========================================================================
-    // Decisions CRUD
-    // =========================================================================
-    async addDecision(row) {
-        await this.db.insert(brainSchema.brainDecisions).values(row);
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainDecisions)
-            .where(eq(brainSchema.brainDecisions.id, row.id));
-        return result[0];
-    }
-    async getDecision(id) {
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainDecisions)
-            .where(eq(brainSchema.brainDecisions.id, id));
-        return result[0] ?? null;
-    }
-    async findDecisions(params = {}) {
-        const conditions = [];
-        if (params.type) {
-            conditions.push(eq(brainSchema.brainDecisions.type, params.type));
-        }
-        if (params.confidence) {
-            conditions.push(eq(brainSchema.brainDecisions.confidence, params.confidence));
-        }
-        if (params.outcome) {
-            conditions.push(eq(brainSchema.brainDecisions.outcome, params.outcome));
-        }
-        if (params.contextTaskId) {
-            conditions.push(eq(brainSchema.brainDecisions.contextTaskId, params.contextTaskId));
-        }
-        let query = this.db
-            .select()
-            .from(brainSchema.brainDecisions)
-            .orderBy(desc(brainSchema.brainDecisions.createdAt));
-        if (conditions.length > 0) {
-            query = query.where(and(...conditions));
-        }
-        if (params.limit) {
-            query = query.limit(params.limit);
-        }
-        return query;
-    }
-    async updateDecision(id, updates) {
-        await this.db
-            .update(brainSchema.brainDecisions)
-            .set({ ...updates, updatedAt: new Date().toISOString().replace('T', ' ').slice(0, 19) })
-            .where(eq(brainSchema.brainDecisions.id, id));
-    }
-    // =========================================================================
-    // Patterns CRUD
-    // =========================================================================
-    async addPattern(row) {
-        await this.db.insert(brainSchema.brainPatterns).values(row);
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainPatterns)
-            .where(eq(brainSchema.brainPatterns.id, row.id));
-        return result[0];
-    }
-    async getPattern(id) {
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainPatterns)
-            .where(eq(brainSchema.brainPatterns.id, id));
-        return result[0] ?? null;
-    }
-    async findPatterns(params = {}) {
-        const conditions = [];
-        if (params.type) {
-            conditions.push(eq(brainSchema.brainPatterns.type, params.type));
-        }
-        if (params.impact) {
-            conditions.push(eq(brainSchema.brainPatterns.impact, params.impact));
-        }
-        if (params.minFrequency !== undefined) {
-            conditions.push(gte(brainSchema.brainPatterns.frequency, params.minFrequency));
-        }
-        let query = this.db
-            .select()
-            .from(brainSchema.brainPatterns)
-            .orderBy(desc(brainSchema.brainPatterns.frequency));
-        if (conditions.length > 0) {
-            query = query.where(and(...conditions));
-        }
-        if (params.limit) {
-            query = query.limit(params.limit);
-        }
-        return query;
-    }
-    async updatePattern(id, updates) {
-        await this.db
-            .update(brainSchema.brainPatterns)
-            .set({ ...updates, updatedAt: new Date().toISOString().replace('T', ' ').slice(0, 19) })
-            .where(eq(brainSchema.brainPatterns.id, id));
-    }
-    // =========================================================================
-    // Learnings CRUD
-    // =========================================================================
-    async addLearning(row) {
-        await this.db.insert(brainSchema.brainLearnings).values(row);
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainLearnings)
-            .where(eq(brainSchema.brainLearnings.id, row.id));
-        return result[0];
-    }
-    async getLearning(id) {
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainLearnings)
-            .where(eq(brainSchema.brainLearnings.id, id));
-        return result[0] ?? null;
-    }
-    async findLearnings(params = {}) {
-        const conditions = [];
-        if (params.minConfidence !== undefined) {
-            conditions.push(gte(brainSchema.brainLearnings.confidence, params.minConfidence));
-        }
-        if (params.actionable !== undefined) {
-            conditions.push(eq(brainSchema.brainLearnings.actionable, params.actionable));
-        }
-        let query = this.db
-            .select()
-            .from(brainSchema.brainLearnings)
-            .orderBy(desc(brainSchema.brainLearnings.confidence));
-        if (conditions.length > 0) {
-            query = query.where(and(...conditions));
-        }
-        if (params.limit) {
-            query = query.limit(params.limit);
-        }
-        return query;
-    }
-    async updateLearning(id, updates) {
-        await this.db
-            .update(brainSchema.brainLearnings)
-            .set({ ...updates, updatedAt: new Date().toISOString().replace('T', ' ').slice(0, 19) })
-            .where(eq(brainSchema.brainLearnings.id, id));
-    }
-    // =========================================================================
-    // Observations CRUD
-    // =========================================================================
-    async addObservation(row) {
-        await this.db.insert(brainSchema.brainObservations).values(row);
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainObservations)
-            .where(eq(brainSchema.brainObservations.id, row.id));
-        return result[0];
-    }
-    async getObservation(id) {
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainObservations)
-            .where(eq(brainSchema.brainObservations.id, id));
-        return result[0] ?? null;
-    }
-    async findObservations(params = {}) {
-        const conditions = [];
-        if (params.type) {
-            conditions.push(eq(brainSchema.brainObservations.type, params.type));
-        }
-        if (params.project) {
-            conditions.push(eq(brainSchema.brainObservations.project, params.project));
-        }
-        if (params.sourceType) {
-            conditions.push(eq(brainSchema.brainObservations.sourceType, params.sourceType));
-        }
-        if (params.sourceSessionId) {
-            conditions.push(eq(brainSchema.brainObservations.sourceSessionId, params.sourceSessionId));
-        }
-        let query = this.db
-            .select()
-            .from(brainSchema.brainObservations)
-            .orderBy(desc(brainSchema.brainObservations.createdAt));
-        if (conditions.length > 0) {
-            query = query.where(and(...conditions));
-        }
-        if (params.limit) {
-            query = query.limit(params.limit);
-        }
-        return query;
-    }
-    async updateObservation(id, updates) {
-        await this.db
-            .update(brainSchema.brainObservations)
-            .set({ ...updates, updatedAt: new Date().toISOString().replace('T', ' ').slice(0, 19) })
-            .where(eq(brainSchema.brainObservations.id, id));
-    }
-    // =========================================================================
-    // Memory Links CRUD
-    // =========================================================================
-    async addLink(row) {
-        await this.db.insert(brainSchema.brainMemoryLinks).values(row);
-    }
-    async getLinksForMemory(memoryType, memoryId) {
-        return this.db
-            .select()
-            .from(brainSchema.brainMemoryLinks)
-            .where(and(eq(brainSchema.brainMemoryLinks.memoryType, memoryType), eq(brainSchema.brainMemoryLinks.memoryId, memoryId)))
-            .orderBy(asc(brainSchema.brainMemoryLinks.createdAt));
-    }
-    async getLinksForTask(taskId) {
-        return this.db
-            .select()
-            .from(brainSchema.brainMemoryLinks)
-            .where(eq(brainSchema.brainMemoryLinks.taskId, taskId))
-            .orderBy(asc(brainSchema.brainMemoryLinks.createdAt));
-    }
-    async removeLink(memoryType, memoryId, taskId, linkType) {
-        await this.db
-            .delete(brainSchema.brainMemoryLinks)
-            .where(and(eq(brainSchema.brainMemoryLinks.memoryType, memoryType), eq(brainSchema.brainMemoryLinks.memoryId, memoryId), eq(brainSchema.brainMemoryLinks.taskId, taskId), eq(brainSchema.brainMemoryLinks.linkType, linkType)));
-    }
-    // =========================================================================
-    // Sticky Notes CRUD
-    // =========================================================================
-    async addStickyNote(row) {
-        await this.db.insert(brainSchema.brainStickyNotes).values(row);
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainStickyNotes)
-            .where(eq(brainSchema.brainStickyNotes.id, row.id));
-        return result[0];
-    }
-    async getStickyNote(id) {
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainStickyNotes)
-            .where(eq(brainSchema.brainStickyNotes.id, id));
-        return result[0] ?? null;
-    }
-    async findStickyNotes(params = {}) {
-        const conditions = [];
-        if (params.status) {
-            conditions.push(eq(brainSchema.brainStickyNotes.status, params.status));
-        }
-        if (params.color) {
-            conditions.push(eq(brainSchema.brainStickyNotes.color, params.color));
-        }
-        if (params.priority) {
-            conditions.push(eq(brainSchema.brainStickyNotes.priority, params.priority));
-        }
-        let query = this.db
-            .select()
-            .from(brainSchema.brainStickyNotes)
-            .orderBy(desc(brainSchema.brainStickyNotes.createdAt));
-        if (conditions.length > 0) {
-            query = query.where(and(...conditions));
-        }
-        if (params.limit) {
-            query = query.limit(params.limit);
-        }
-        return query;
-    }
-    async updateStickyNote(id, updates) {
-        await this.db
-            .update(brainSchema.brainStickyNotes)
-            .set({ ...updates, updatedAt: new Date().toISOString().replace('T', ' ').slice(0, 19) })
-            .where(eq(brainSchema.brainStickyNotes.id, id));
-    }
-    async deleteStickyNote(id) {
-        await this.db
-            .delete(brainSchema.brainStickyNotes)
-            .where(eq(brainSchema.brainStickyNotes.id, id));
-    }
-    // =========================================================================
-    // PageIndex Node CRUD (T5383)
-    // =========================================================================
-    async addPageNode(node) {
-        await this.db.insert(brainSchema.brainPageNodes).values(node);
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainPageNodes)
-            .where(eq(brainSchema.brainPageNodes.id, node.id));
-        return result[0];
-    }
-    async getPageNode(id) {
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainPageNodes)
-            .where(eq(brainSchema.brainPageNodes.id, id));
-        return result[0] ?? null;
-    }
-    async findPageNodes(params = {}) {
-        const conditions = [];
-        if (params.nodeType) {
-            conditions.push(eq(brainSchema.brainPageNodes.nodeType, params.nodeType));
-        }
-        let query = this.db
-            .select()
-            .from(brainSchema.brainPageNodes)
-            .orderBy(desc(brainSchema.brainPageNodes.createdAt));
-        if (conditions.length > 0) {
-            query = query.where(and(...conditions));
-        }
-        if (params.limit) {
-            query = query.limit(params.limit);
-        }
-        return query;
-    }
-    async removePageNode(id) {
-        // Remove associated edges first (both directions)
-        await this.db
-            .delete(brainSchema.brainPageEdges)
-            .where(or(eq(brainSchema.brainPageEdges.fromId, id), eq(brainSchema.brainPageEdges.toId, id)));
-        // Remove the node
-        await this.db.delete(brainSchema.brainPageNodes).where(eq(brainSchema.brainPageNodes.id, id));
-    }
-    // =========================================================================
-    // PageIndex Edge CRUD (T5383)
-    // =========================================================================
-    async addPageEdge(edge) {
-        await this.db.insert(brainSchema.brainPageEdges).values(edge);
-        const result = await this.db
-            .select()
-            .from(brainSchema.brainPageEdges)
-            .where(and(eq(brainSchema.brainPageEdges.fromId, edge.fromId), eq(brainSchema.brainPageEdges.toId, edge.toId), eq(brainSchema.brainPageEdges.edgeType, edge.edgeType)));
-        return result[0];
-    }
-    async getPageEdges(nodeId, direction = 'both') {
-        if (direction === 'out') {
-            return this.db
-                .select()
-                .from(brainSchema.brainPageEdges)
-                .where(eq(brainSchema.brainPageEdges.fromId, nodeId))
-                .orderBy(asc(brainSchema.brainPageEdges.createdAt));
-        }
-        if (direction === 'in') {
-            return this.db
-                .select()
-                .from(brainSchema.brainPageEdges)
-                .where(eq(brainSchema.brainPageEdges.toId, nodeId))
-                .orderBy(asc(brainSchema.brainPageEdges.createdAt));
-        }
-        // both
-        return this.db
-            .select()
-            .from(brainSchema.brainPageEdges)
-            .where(or(eq(brainSchema.brainPageEdges.fromId, nodeId), eq(brainSchema.brainPageEdges.toId, nodeId)))
-            .orderBy(asc(brainSchema.brainPageEdges.createdAt));
-    }
-    async getNeighbors(nodeId, edgeType) {
-        // Get edges from this node
-        const conditions = [eq(brainSchema.brainPageEdges.fromId, nodeId)];
-        if (edgeType) {
-            conditions.push(eq(brainSchema.brainPageEdges.edgeType, edgeType));
-        }
-        const edges = await this.db
-            .select()
-            .from(brainSchema.brainPageEdges)
-            .where(and(...conditions));
-        if (edges.length === 0)
-            return [];
-        const neighborIds = edges.map((e) => e.toId);
-        const nodes = [];
-        for (const nid of neighborIds) {
-            const node = await this.getPageNode(nid);
-            if (node)
-                nodes.push(node);
-        }
-        return nodes;
-    }
-    async removePageEdge(fromId, toId, edgeType) {
-        await this.db
-            .delete(brainSchema.brainPageEdges)
-            .where(and(eq(brainSchema.brainPageEdges.fromId, fromId), eq(brainSchema.brainPageEdges.toId, toId), eq(brainSchema.brainPageEdges.edgeType, edgeType)));
-    }
-}
-/**
- * Factory: get a BrainDataAccessor backed by the brain.db singleton.
- */
-export async function getBrainAccessor(cwd) {
-    const db = await getBrainDb(cwd);
-    return new BrainDataAccessor(db);
-}
-//# sourceMappingURL=brain-accessor.js.map