@cleocode/core 2026.3.66 → 2026.3.68

package/dist/store/brain-accessor.js.map

@@ -0,0 +1 @@
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package/dist/store/brain-schema.js

@@ -0,0 +1,215 @@
+/**
+ * Drizzle ORM schema for CLEO brain.db (SQLite via node:sqlite + sqlite-proxy).
+ *
+ * Tables: brain_decisions, brain_patterns, brain_learnings, brain_memory_links, brain_schema_meta
+ * Stores cognitive infrastructure: decisions, patterns, and learnings extracted
+ * from CLEO task execution. Cross-references tasks in tasks.db via soft FKs.
+ *
+ * @epic T5149
+ * @task T5127
+ */
+import { sql } from 'drizzle-orm';
+import { index, integer, primaryKey, real, sqliteTable, text } from 'drizzle-orm/sqlite-core';
+// === ENUM CONSTANTS ===
+/** Decision types from ADR-009. */
+export const BRAIN_DECISION_TYPES = [
+    'architecture',
+    'technical',
+    'process',
+    'strategic',
+    'tactical',
+];
+/** Confidence levels for decisions. */
+export const BRAIN_CONFIDENCE_LEVELS = ['low', 'medium', 'high'];
+/** Outcome types for decision tracking. */
+export const BRAIN_OUTCOME_TYPES = ['success', 'failure', 'mixed', 'pending'];
+/** Pattern types for workflow analysis. */
+export const BRAIN_PATTERN_TYPES = [
+    'workflow',
+    'blocker',
+    'success',
+    'failure',
+    'optimization',
+];
+/** Impact levels for patterns. */
+export const BRAIN_IMPACT_LEVELS = ['low', 'medium', 'high'];
+/** Link types for cross-referencing BRAIN entries with tasks. */
+export const BRAIN_LINK_TYPES = [
+    'produced_by',
+    'applies_to',
+    'informed_by',
+    'contradicts',
+];
+/** Observation types for claude-mem compatible observations. */
+export const BRAIN_OBSERVATION_TYPES = [
+    'discovery',
+    'change',
+    'feature',
+    'bugfix',
+    'decision',
+    'refactor',
+];
+/** Source types for observations (how the observation was created). */
+export const BRAIN_OBSERVATION_SOURCE_TYPES = [
+    'agent',
+    'session-debrief',
+    'claude-mem',
+    'manual',
+];
+/** Memory entity types for the links table. */
+export const BRAIN_MEMORY_TYPES = ['decision', 'pattern', 'learning', 'observation'];
+/** Sticky note status values. */
+export const BRAIN_STICKY_STATUSES = ['active', 'converted', 'archived'];
+/** Sticky note colors. */
+export const BRAIN_STICKY_COLORS = ['yellow', 'blue', 'green', 'red', 'purple'];
+/** Sticky note priority levels. */
+export const BRAIN_STICKY_PRIORITIES = ['low', 'medium', 'high'];
+// === BRAIN_DECISIONS TABLE ===
+export const brainDecisions = sqliteTable('brain_decisions', {
+    id: text('id').primaryKey(),
+    type: text('type', { enum: BRAIN_DECISION_TYPES }).notNull(),
+    decision: text('decision').notNull(),
+    rationale: text('rationale').notNull(),
+    confidence: text('confidence', { enum: BRAIN_CONFIDENCE_LEVELS }).notNull(),
+    outcome: text('outcome', { enum: BRAIN_OUTCOME_TYPES }),
+    alternativesJson: text('alternatives_json'),
+    contextEpicId: text('context_epic_id'), // soft FK to tasks.id in tasks.db
+    contextTaskId: text('context_task_id'), // soft FK to tasks.id in tasks.db
+    contextPhase: text('context_phase'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+}, (table) => [
+    index('idx_brain_decisions_type').on(table.type),
+    index('idx_brain_decisions_confidence').on(table.confidence),
+    index('idx_brain_decisions_outcome').on(table.outcome),
+    index('idx_brain_decisions_context_epic').on(table.contextEpicId),
+    index('idx_brain_decisions_context_task').on(table.contextTaskId),
+]);
+// === BRAIN_PATTERNS TABLE ===
+export const brainPatterns = sqliteTable('brain_patterns', {
+    id: text('id').primaryKey(),
+    type: text('type', { enum: BRAIN_PATTERN_TYPES }).notNull(),
+    pattern: text('pattern').notNull(),
+    context: text('context').notNull(),
+    frequency: integer('frequency').notNull().default(1),
+    successRate: real('success_rate'),
+    impact: text('impact', { enum: BRAIN_IMPACT_LEVELS }),
+    antiPattern: text('anti_pattern'),
+    mitigation: text('mitigation'),
+    examplesJson: text('examples_json').default('[]'),
+    extractedAt: text('extracted_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+}, (table) => [
+    index('idx_brain_patterns_type').on(table.type),
+    index('idx_brain_patterns_impact').on(table.impact),
+    index('idx_brain_patterns_frequency').on(table.frequency),
+]);
+// === BRAIN_LEARNINGS TABLE ===
+export const brainLearnings = sqliteTable('brain_learnings', {
+    id: text('id').primaryKey(),
+    insight: text('insight').notNull(),
+    source: text('source').notNull(),
+    confidence: real('confidence').notNull(), // 0.0-1.0
+    actionable: integer('actionable', { mode: 'boolean' }).notNull().default(false),
+    application: text('application'),
+    applicableTypesJson: text('applicable_types_json'),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+}, (table) => [
+    index('idx_brain_learnings_confidence').on(table.confidence),
+    index('idx_brain_learnings_actionable').on(table.actionable),
+]);
+// === BRAIN_OBSERVATIONS TABLE ===
+/** General-purpose observations — replaces claude-mem's observations table. */
+export const brainObservations = sqliteTable('brain_observations', {
+    id: text('id').primaryKey(),
+    type: text('type', { enum: BRAIN_OBSERVATION_TYPES }).notNull(),
+    title: text('title').notNull(),
+    subtitle: text('subtitle'),
+    narrative: text('narrative'),
+    factsJson: text('facts_json'), // JSON array of fact strings
+    conceptsJson: text('concepts_json'), // JSON array of concept strings
+    project: text('project'),
+    filesReadJson: text('files_read_json'), // JSON array of file paths
+    filesModifiedJson: text('files_modified_json'), // JSON array of file paths
+    sourceSessionId: text('source_session_id'), // soft FK to sessions
+    sourceType: text('source_type', { enum: BRAIN_OBSERVATION_SOURCE_TYPES })
+        .notNull()
+        .default('agent'),
+    contentHash: text('content_hash'), // SHA-256 prefix for dedup
+    discoveryTokens: integer('discovery_tokens'), // cost to produce this observation
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+}, (table) => [
+    index('idx_brain_observations_type').on(table.type),
+    index('idx_brain_observations_project').on(table.project),
+    index('idx_brain_observations_created_at').on(table.createdAt),
+    index('idx_brain_observations_source_type').on(table.sourceType),
+    index('idx_brain_observations_source_session').on(table.sourceSessionId),
+    // T033: composite replaces single-col content_hash; see brain migration
+    index('idx_brain_observations_content_hash_created_at').on(table.contentHash, table.createdAt),
+    // T033: type + project compound filter optimization
+    index('idx_brain_observations_type_project').on(table.type, table.project),
+]);
+// === BRAIN_STICKY_NOTES TABLE ===
+/** Ephemeral sticky notes for quick capture before formal classification. */
+export const brainStickyNotes = sqliteTable('brain_sticky_notes', {
+    id: text('id').primaryKey(),
+    content: text('content').notNull(),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+    updatedAt: text('updated_at'),
+    tagsJson: text('tags_json'),
+    status: text('status', { enum: BRAIN_STICKY_STATUSES }).notNull().default('active'),
+    convertedToJson: text('converted_to_json'),
+    color: text('color', { enum: BRAIN_STICKY_COLORS }),
+    priority: text('priority', { enum: BRAIN_STICKY_PRIORITIES }),
+    sourceType: text('source_type').default('sticky-note'),
+}, (table) => [
+    index('idx_brain_sticky_status').on(table.status),
+    index('idx_brain_sticky_created').on(table.createdAt),
+    index('idx_brain_sticky_tags').on(table.tagsJson),
+]);
+// === BRAIN_MEMORY_LINKS TABLE ===
+/** Cross-references between BRAIN entries and tasks in tasks.db. */
+export const brainMemoryLinks = sqliteTable('brain_memory_links', {
+    memoryType: text('memory_type', { enum: BRAIN_MEMORY_TYPES }).notNull(),
+    memoryId: text('memory_id').notNull(),
+    taskId: text('task_id').notNull(), // soft FK to tasks.id in tasks.db
+    linkType: text('link_type', { enum: BRAIN_LINK_TYPES }).notNull(),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+}, (table) => [
+    primaryKey({ columns: [table.memoryType, table.memoryId, table.taskId, table.linkType] }),
+    index('idx_brain_links_task').on(table.taskId),
+    index('idx_brain_links_memory').on(table.memoryType, table.memoryId),
+]);
+// === SCHEMA METADATA ===
+export const brainSchemaMeta = sqliteTable('brain_schema_meta', {
+    key: text('key').primaryKey(),
+    value: text('value').notNull(),
+});
+// === PAGEINDEX GRAPH TABLES (T5160) ===
+/** Node types for PageIndex graph. */
+export const BRAIN_NODE_TYPES = ['task', 'doc', 'file', 'concept'];
+/** Edge types for PageIndex graph. */
+export const BRAIN_EDGE_TYPES = ['depends_on', 'relates_to', 'implements', 'documents'];
+/** Documents/concepts as graph nodes for cross-document linking. */
+export const brainPageNodes = sqliteTable('brain_page_nodes', {
+    id: text('id').primaryKey(), // 'task:T5241', 'doc:BRAIN-SPEC', 'file:src/store/brain-schema.ts'
+    nodeType: text('node_type', { enum: BRAIN_NODE_TYPES }).notNull(),
+    label: text('label').notNull(),
+    metadataJson: text('metadata_json'), // JSON blob for extensible metadata
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+}, (table) => [index('idx_brain_nodes_type').on(table.nodeType)]);
+/** Directed links between graph nodes. */
+export const brainPageEdges = sqliteTable('brain_page_edges', {
+    fromId: text('from_id').notNull(),
+    toId: text('to_id').notNull(),
+    edgeType: text('edge_type', { enum: BRAIN_EDGE_TYPES }).notNull(),
+    weight: real('weight').default(1.0),
+    createdAt: text('created_at').notNull().default(sql `(datetime('now'))`),
+}, (table) => [
+    primaryKey({ columns: [table.fromId, table.toId, table.edgeType] }),
+    index('idx_brain_edges_from').on(table.fromId),
+    index('idx_brain_edges_to').on(table.toId),
+]);
+//# sourceMappingURL=brain-schema.js.map

package/dist/store/brain-schema.js.map

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package/dist/store/brain-sqlite.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"brain-sqlite.d.ts","sourceRoot":"","sources":["../../src/store/brain-sqlite.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAOH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAEhD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAGlE,OAAO,KAAK,WAAW,MAAM,mBAAmB,CAAC;AAcjD,gFAAgF;AAChF,eAAO,MAAM,oBAAoB,UAAU,CAAC;AAW5C;;GAEG;AACH,wBAAgB,cAAc,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,CAEnD;AAED;;;;;;GAMG;AACH,wBAAgB,4BAA4B,IAAI,MAAM,CAMrD;AAoED;;GAEG;AACH,wBAAgB,gBAAgB,IAAI,OAAO,CAE1C;AAED;;;;;;;GAOG;AACH,wBAAsB,UAAU,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,CAAC,OAAO,WAAW,CAAC,CAAC,CA0D9F;AAED;;GAEG;AACH,wBAAgB,YAAY,IAAI,IAAI,CAcnC;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,IAAI,IAAI,CAexC;AAED;;;;GAIG;AACH,wBAAgB,gBAAgB,IAAI,YAAY,GAAG,IAAI,CAEtD;AAED,YAAY,EAAE,kBAAkB,EAAE,CAAC;AACnC;;GAEG;AACH,OAAO,EAAE,WAAW,EAAE,CAAC"}

package/dist/store/brain-sqlite.js

@@ -0,0 +1,271 @@
+/**
+ * SQLite store for brain.db via drizzle-orm/node-sqlite + node:sqlite (DatabaseSync).
+ *
+ * Separate database from tasks.db for cognitive infrastructure (decisions,
+ * patterns, learnings). Follows the same singleton + WAL + migration pattern
+ * as sqlite.ts.
+ *
+ * @epic T5149
+ * @task T5128
+ */
+import { copyFileSync, existsSync, mkdirSync } from 'node:fs';
+import { createRequire } from 'node:module';
+import { dirname, join } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { readMigrationFiles } from 'drizzle-orm/migrator';
+import { drizzle } from 'drizzle-orm/node-sqlite';
+import { migrate } from 'drizzle-orm/node-sqlite/migrator';
+import { getCleoDirAbsolute } from '../paths.js';
+import * as brainSchema from './brain-schema.js';
+import { isSqliteBusy, openNativeDatabase } from './sqlite.js';
+const _require = createRequire(import.meta.url);
+/** Database file name within .cleo/ directory. */
+const DB_FILENAME = 'brain.db';
+/** Schema version for newly created brain databases. Single source of truth. */
+export const BRAIN_SCHEMA_VERSION = '1.0.0';
+/** Singleton state for lazy initialization. */
+let _db = null;
+let _nativeDb = null;
+let _dbPath = null;
+/** Guard against concurrent initialization (async migration). */
+let _initPromise = null;
+/** Whether sqlite-vec extension loaded successfully. */
+let _vecLoaded = false;
+/**
+ * Get the path to the brain.db SQLite database file.
+ */
+export function getBrainDbPath(cwd) {
+    return join(getCleoDirAbsolute(cwd), DB_FILENAME);
+}
+/**
+ * Resolve the path to the drizzle-brain migrations folder.
+ * Works from both src/ (dev via tsx) and dist/ (compiled via esbuild bundle).
+ *
+ * - Source layout: __dirname = src/store/ → need ../../migrations/drizzle-brain
+ * - Bundled layout: __dirname = dist/     → need ../migrations/drizzle-brain
+ */
+export function resolveBrainMigrationsFolder() {
+    const __filename = fileURLToPath(import.meta.url);
+    const __dirname = dirname(__filename);
+    const isBundled = __dirname.endsWith('/dist') || __dirname.endsWith('\\dist');
+    const pkgRoot = isBundled ? join(__dirname, '..') : join(__dirname, '..', '..');
+    return join(pkgRoot, 'migrations', 'drizzle-brain');
+}
+/**
+ * Check whether a table exists in the SQLite database.
+ */
+function tableExists(nativeDb, tableName) {
+    const result = nativeDb
+        .prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?")
+        .get(tableName);
+    return !!result;
+}
+/**
+ * Run drizzle migrations to create/update brain.db tables.
+ *
+ * Uses IMMEDIATE transactions to prevent concurrent migration races.
+ * Follows the same pattern as sqlite.ts runMigrations().
+ *
+ * @task T5128
+ */
+function runBrainMigrations(nativeDb, db) {
+    const migrationsFolder = resolveBrainMigrationsFolder();
+    // If existing DB with pending migrations, create safety backup (cleo compat)
+    if (tableExists(nativeDb, 'brain_decisions') && _dbPath) {
+        const backupPath = _dbPath.replace(/\.db$/, '-pre-cleo.db.bak');
+        if (!existsSync(backupPath)) {
+            try {
+                copyFileSync(_dbPath, backupPath);
+            }
+            catch {
+                /* non-fatal */
+            }
+        }
+    }
+    // Bootstrap existing databases that predate drizzle migrations.
+    // Mark baseline migration as already applied if tables exist but
+    // __drizzle_migrations doesn't.
+    if (tableExists(nativeDb, 'brain_decisions') && !tableExists(nativeDb, '__drizzle_migrations')) {
+        const migrations = readMigrationFiles({ migrationsFolder });
+        const baseline = migrations[0];
+        if (baseline) {
+            nativeDb.exec(`
+        CREATE TABLE IF NOT EXISTS "__drizzle_migrations" (
+          id SERIAL PRIMARY KEY,
+          hash text NOT NULL,
+          created_at numeric
+        )
+      `);
+            nativeDb.exec(`INSERT INTO "__drizzle_migrations" ("hash", "created_at") VALUES ('${baseline.hash}', ${baseline.folderMillis})`);
+        }
+    }
+    // Run pending migrations via drizzle-orm/node-sqlite/migrator (synchronous).
+    const MAX_RETRIES = 5;
+    const BASE_DELAY_MS = 100;
+    const MAX_DELAY_MS = 2000;
+    let lastError;
+    for (let attempt = 1; attempt <= MAX_RETRIES; attempt++) {
+        try {
+            migrate(db, { migrationsFolder });
+            return;
+        }
+        catch (err) {
+            if (!isSqliteBusy(err) || attempt === MAX_RETRIES)
+                throw err;
+            lastError = err;
+            const delay = Math.min(BASE_DELAY_MS * 2 ** (attempt - 1) * (1 + Math.random() * 0.5), MAX_DELAY_MS);
+            Atomics.wait(new Int32Array(new SharedArrayBuffer(4)), 0, 0, Math.round(delay));
+        }
+    }
+    /* c8 ignore next */
+    throw lastError;
+}
+/**
+ * Load the sqlite-vec extension into a native DatabaseSync instance.
+ * Returns true if the extension loaded successfully, false otherwise.
+ *
+ * The extension enables vec0 virtual tables for vector similarity search.
+ * Requires the database to be opened with allowExtension: true.
+ *
+ * @task T5157
+ */
+function loadBrainVecExtension(nativeDb) {
+    try {
+        const sqliteVec = _require('sqlite-vec');
+        sqliteVec.load(nativeDb);
+        return true;
+    }
+    catch {
+        // sqlite-vec not available or failed to load — non-fatal
+        return false;
+    }
+}
+/**
+ * Create the vec0 virtual table for brain embeddings.
+ * Called after migrations complete and sqlite-vec extension is loaded.
+ *
+ * The vec0 table is not managed by Drizzle (virtual tables are not
+ * supported by drizzle-orm's SQLite schema). Created via raw SQL.
+ *
+ * @task T5157
+ */
+function initializeBrainVec(nativeDb) {
+    nativeDb
+        .prepare('CREATE VIRTUAL TABLE IF NOT EXISTS brain_embeddings USING vec0(id TEXT PRIMARY KEY, embedding FLOAT[384])')
+        .run();
+}
+/**
+ * Check whether the sqlite-vec extension is loaded for the current brain.db.
+ */
+export function isBrainVecLoaded() {
+    return _vecLoaded;
+}
+/**
+ * Initialize the brain.db SQLite database (lazy, singleton).
+ * Creates the database file and tables if they don't exist.
+ * Returns the drizzle ORM instance (async via sqlite-proxy).
+ *
+ * Uses a promise guard so concurrent callers wait for the same
+ * initialization to complete (migrations are async).
+ */
+export async function getBrainDb(cwd) {
+    const requestedPath = getBrainDbPath(cwd);
+    // If singleton exists but points to different path, reset it
+    if (_db && _dbPath !== requestedPath) {
+        resetBrainDbState();
+    }
+    if (_db)
+        return _db;
+    // If already initializing, wait for the in-flight init
+    if (_initPromise)
+        return _initPromise;
+    _initPromise = (async () => {
+        const dbPath = requestedPath;
+        _dbPath = dbPath;
+        // Ensure directory exists
+        mkdirSync(dirname(dbPath), { recursive: true });
+        // Open file-backed SQLite via node:sqlite with WAL mode.
+        // allowExtension: true enables sqlite-vec extension loading.
+        const nativeDb = openNativeDatabase(dbPath, { allowExtension: true });
+        _nativeDb = nativeDb;
+        // Load sqlite-vec extension for vector similarity search (T5157).
+        // Non-fatal if unavailable — vec0 tables simply won't be created.
+        _vecLoaded = loadBrainVecExtension(nativeDb);
+        // Create drizzle ORM wrapper via node-sqlite
+        const db = drizzle({ client: nativeDb, schema: brainSchema });
+        // Run drizzle migrations (creates/updates tables)
+        runBrainMigrations(nativeDb, db);
+        // Create vec0 virtual table for embeddings if extension is loaded (T5157).
+        // Must run after migrations so the schema is consistent.
+        if (_vecLoaded) {
+            initializeBrainVec(nativeDb);
+        }
+        // Seed schema version for new databases (no-op if already set)
+        nativeDb
+            .prepare(`INSERT OR IGNORE INTO brain_schema_meta (key, value) VALUES ('schemaVersion', '${BRAIN_SCHEMA_VERSION}')`)
+            .run();
+        // Set singleton only after migrations complete
+        _db = db;
+        return db;
+    })();
+    try {
+        return await _initPromise;
+    }
+    finally {
+        _initPromise = null;
+    }
+}
+/**
+ * Close the brain.db database connection and release resources.
+ */
+export function closeBrainDb() {
+    if (_nativeDb) {
+        try {
+            if (_nativeDb.isOpen) {
+                _nativeDb.close();
+            }
+        }
+        catch {
+            // Ignore close errors
+        }
+        _nativeDb = null;
+    }
+    _db = null;
+    _dbPath = null;
+    _vecLoaded = false;
+}
+/**
+ * Reset brain.db singleton state without saving.
+ * Used during tests or when database file is recreated.
+ * Safe to call multiple times.
+ */
+export function resetBrainDbState() {
+    if (_nativeDb) {
+        try {
+            if (_nativeDb.isOpen) {
+                _nativeDb.close();
+            }
+        }
+        catch {
+            // Ignore close errors
+        }
+        _nativeDb = null;
+    }
+    _db = null;
+    _dbPath = null;
+    _initPromise = null;
+    _vecLoaded = false;
+}
+/**
+ * Get the underlying node:sqlite DatabaseSync instance for brain.db.
+ * Useful for direct PRAGMA calls or raw SQL operations.
+ * Returns null if the database hasn't been initialized.
+ */
+export function getBrainNativeDb() {
+    return _nativeDb;
+}
+/**
+ * Re-export brain schema for external use.
+ */
+export { brainSchema };
+//# sourceMappingURL=brain-sqlite.js.map

package/dist/store/brain-sqlite.js.map

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