@cleocode/core 2026.3.46 → 2026.3.48

package/dist/bootstrap.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bootstrap.d.ts","sourceRoot":"","sources":["../src/bootstrap.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAWH,iEAAiE;AACjE,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,uCAAuC;AACvC,MAAM,WAAW,gBAAgB;IAC/B,wCAAwC;IACxC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,0DAA0D;IAC1D,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAID;;;;;;;;GAQG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,CAAC,EAAE,gBAAgB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAuB/F;AA6HD;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAmChF;AAID;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAahF"}
+{"version":3,"file":"bootstrap.d.ts","sourceRoot":"","sources":["../src/bootstrap.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAWH,iEAAiE;AACjE,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,uCAAuC;AACvC,MAAM,WAAW,gBAAgB;IAC/B,wCAAwC;IACxC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,0DAA0D;IAC1D,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAID;;;;;;;;GAQG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,CAAC,EAAE,gBAAgB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CA0B/F;AAiID;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAmChF;AAID;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAahF"}

package/dist/index.js

@@ -18900,7 +18900,7 @@ function checkInjection2(projectRoot) {
       status: "warning",
       message: "AGENTS.md not found in project root",
       details: { path: agentsMdPath, exists: false },
-      fix: "cleo init --update-docs"
+      fix: "cleo upgrade"
     };
   }
   let content;
@@ -18925,7 +18925,7 @@ function checkInjection2(projectRoot) {
       status: "warning",
       message: "AGENTS.md exists but has no CAAMP markers",
       details: { path: agentsMdPath, hasCaampMarker: false },
-      fix: "cleo init --update-docs"
+      fix: "cleo upgrade"
     };
   }
   if (startCount !== endCount) {
@@ -18935,7 +18935,7 @@ function checkInjection2(projectRoot) {
       status: "warning",
       message: `CAAMP markers unbalanced: ${startCount} START vs ${endCount} END`,
       details: { path: agentsMdPath, startCount, endCount },
-      fix: "cleo init --update-docs"
+      fix: "cleo upgrade"
     };
   }
   const caampMatch = content.match(/<!-- CAAMP:START -->([\s\S]*?)<!-- CAAMP:END -->/);
@@ -18957,7 +18957,7 @@ function checkInjection2(projectRoot) {
         status: "warning",
         message: `Missing @ reference targets: ${missing.join(", ")}`,
         details: { path: agentsMdPath, missing, totalRefs: refs.length },
-        fix: "cleo init --update-docs"
+        fix: "cleo upgrade"
       };
     }
   }
@@ -18974,7 +18974,7 @@ function checkInjection2(projectRoot) {
           status: "warning",
           message: `CLAUDE.md CAAMP markers unbalanced: ${cStartCount} START vs ${cEndCount} END`,
           details: { file: "CLAUDE.md", startCount: cStartCount, endCount: cEndCount },
-          fix: "cleo init --update-docs"
+          fix: "cleo upgrade"
         };
       }
       if (cStartCount === 0) {
@@ -18984,7 +18984,7 @@ function checkInjection2(projectRoot) {
           status: "warning",
           message: "CLAUDE.md has no CAAMP markers",
           details: { file: "CLAUDE.md", hasCaampMarker: false },
-          fix: "cleo init --update-docs"
+          fix: "cleo upgrade"
         };
       }
     } catch {
@@ -19013,6 +19013,7 @@ __export(scaffold_exports, {
   CLEO_GITIGNORE_FALLBACK: () => CLEO_GITIGNORE_FALLBACK,
   REQUIRED_CLEO_SUBDIRS: () => REQUIRED_CLEO_SUBDIRS,
   REQUIRED_GLOBAL_SUBDIRS: () => REQUIRED_GLOBAL_SUBDIRS,
+  STALE_GLOBAL_ENTRIES: () => STALE_GLOBAL_ENTRIES,
   checkBrainDb: () => checkBrainDb,
   checkCleoGitRepo: () => checkCleoGitRepo,
   checkCleoStructure: () => checkCleoStructure,
@@ -19049,7 +19050,7 @@ __export(scaffold_exports, {
 import { execFile as execFile3 } from "node:child_process";
 import { randomUUID } from "node:crypto";
 import { existsSync as existsSync33, constants as fsConstants3, readFileSync as readFileSync22, statSync as statSync8 } from "node:fs";
-import { access as access3, mkdir as mkdir5, readFile as readFile6, writeFile as writeFile5 } from "node:fs/promises";
+import { access as access3, mkdir as mkdir5, readFile as readFile6, rm as rm2, writeFile as writeFile5 } from "node:fs/promises";
 import { dirname as dirname8, join as join37, resolve as resolve5 } from "node:path";
 import { fileURLToPath as fileURLToPath4 } from "node:url";
 import { promisify as promisify3 } from "node:util";
@@ -19064,7 +19065,7 @@ async function fileExists(path2) {
 async function stripCLEOBlocks(filePath) {
   if (!existsSync33(filePath)) return;
   const content = await readFile6(filePath, "utf8");
-  const stripped = content.replace(/\n?<!-- CLEO:START -->[\s\S]*?<!-- CLEO:END -->\n?/g, "");
+  const stripped = content.replace(/\n?<!-- CLEO:START[^>]*-->[\s\S]*?<!-- CLEO:END -->\n?/g, "");
   if (stripped !== content) await writeFile5(filePath, stripped, "utf8");
 }
 async function removeCleoFromRootGitignore(projectRoot) {
@@ -19747,6 +19748,19 @@ async function ensureGlobalHome() {
   for (const subdir of REQUIRED_GLOBAL_SUBDIRS) {
     await mkdir5(join37(cleoHome, subdir), { recursive: true });
   }
+  for (const stale of STALE_GLOBAL_ENTRIES) {
+    const stalePath = join37(cleoHome, stale);
+    if (existsSync33(stalePath)) {
+      try {
+        await rm2(stalePath, { recursive: true, force: true });
+        console.warn(`[CLEO] Removed stale global entry: ${stalePath}`);
+      } catch (err) {
+        console.warn(
+          `[CLEO] Could not remove stale global entry ${stalePath}: ${err instanceof Error ? err.message : String(err)}`
+        );
+      }
+    }
+  }
   return {
     action: alreadyExists ? "skipped" : "created",
     path: cleoHome,
@@ -19861,7 +19875,7 @@ function checkLogDir(projectRoot) {
     fix: null
   };
 }
-var execFileAsync3, REQUIRED_CLEO_SUBDIRS, CLEO_GITIGNORE_FALLBACK, REQUIRED_GLOBAL_SUBDIRS;
+var execFileAsync3, REQUIRED_CLEO_SUBDIRS, CLEO_GITIGNORE_FALLBACK, REQUIRED_GLOBAL_SUBDIRS, STALE_GLOBAL_ENTRIES;
 var init_scaffold = __esm({
   "packages/core/src/scaffold.ts"() {
     "use strict";
@@ -19919,6 +19933,20 @@ metrics/
 backups/
 `;
     REQUIRED_GLOBAL_SUBDIRS = ["logs", "templates"];
+    STALE_GLOBAL_ENTRIES = [
+      "adrs",
+      "rcasd",
+      "agent-outputs",
+      "backups",
+      "sandbox",
+      "tasks.db",
+      "tasks.db-shm",
+      "tasks.db-wal",
+      "brain-worker.pid",
+      "VERSION",
+      "schemas",
+      "bin"
+    ];
   }
 });
 
@@ -41462,8 +41490,8 @@ function parseTokenMetrics(inputFile, cwd) {
     const raw = JSON.parse(readFileSync28(file2, "utf-8"));
     if (raw.resourceMetrics) {
       const points = [];
-      for (const rm2 of raw.resourceMetrics ?? []) {
-        for (const sm of rm2.scopeMetrics ?? []) {
+      for (const rm3 of raw.resourceMetrics ?? []) {
+        for (const sm of rm3.scopeMetrics ?? []) {
           for (const metric of sm.metrics ?? []) {
             if (metric.name !== "claude_code.token.usage") continue;
             for (const dp of metric.sum?.dataPoints ?? []) {
@@ -55905,7 +55933,7 @@ function checkAgentsMdHub(projectRoot) {
       status: "warning",
       message: "AGENTS.md not found in project root",
       details: { path: agentsMdPath, exists: false },
-      fix: "cleo init --update-docs"
+      fix: "cleo upgrade"
     };
   }
   let content;
@@ -55928,7 +55956,7 @@ function checkAgentsMdHub(projectRoot) {
       status: "warning",
       message: "AGENTS.md exists but has no CAAMP:START marker",
       details: { path: agentsMdPath, hasCaampMarker: false },
-      fix: "cleo init --update-docs"
+      fix: "cleo upgrade"
     };
   }
   return {
@@ -56267,7 +56295,7 @@ function checkCaampMarkerIntegrity(projectRoot) {
       status: "warning",
       message: `CAAMP marker issues: ${issues.join("; ")}`,
       details: { issues },
-      fix: "cleo init --update-docs"
+      fix: "cleo upgrade"
     };
   }
   return {
@@ -56333,7 +56361,7 @@ function checkAtReferenceTargetExists(projectRoot) {
       status: "warning",
       message: `Missing @ reference targets: ${missing.join(", ")}`,
       details: { missing, totalRefs: refs.length },
-      fix: "cleo init --update-docs"
+      fix: "cleo upgrade"
     };
   }
   return {
@@ -61914,32 +61942,7 @@ async function installGitHubTemplates(projectRoot, created, skipped) {
     }
   }
 }
-async function updateDocs() {
-  const cleoDir = getCleoDirAbsolute();
-  const projRoot = getProjectRoot();
-  const created = [];
-  const warnings = [];
-  try {
-    const result = await ensureInjection(projRoot);
-    if (result.action !== "skipped") {
-      created.push(`injection: ${result.details ?? result.action}`);
-    }
-  } catch (err) {
-    warnings.push(`CAAMP injection: ${err instanceof Error ? err.message : String(err)}`);
-  }
-  return {
-    initialized: true,
-    directory: cleoDir,
-    created,
-    skipped: [],
-    warnings,
-    updateDocsOnly: true
-  };
-}
 async function initProject(opts = {}) {
-  if (opts.updateDocs) {
-    return updateDocs();
-  }
   const cleoDir = getCleoDirAbsolute();
   const projRoot = getProjectRoot();
   const alreadyInitialized = existsSync99(cleoDir) && (existsSync99(join100(cleoDir, "tasks.db")) || existsSync99(join100(cleoDir, "config.json")));
@@ -62287,7 +62290,7 @@ init_paths();
 
 // packages/core/src/project-info.ts
 init_paths();
-import { existsSync as existsSync101, readFileSync as readFileSync75 } from "node:fs";
+import { existsSync as existsSync101, readFileSync as readFileSync75, writeFileSync as writeFileSync19 } from "node:fs";
 import { readFile as readFile18 } from "node:fs/promises";
 import { join as join102 } from "node:path";
 async function getProjectInfo(cwd) {