@cleocode/core 2026.3.45 → 2026.3.47

package/src/scaffold.ts

@@ -13,7 +13,7 @@
 import { execFile } from 'node:child_process';
 import { randomUUID } from 'node:crypto';
 import { existsSync, constants as fsConstants, readFileSync, statSync } from 'node:fs';
-import { access, mkdir, readFile, writeFile } from 'node:fs/promises';
+import { access, mkdir, readFile, rm, writeFile } from 'node:fs/promises';
 import { dirname, join, resolve } from 'node:path';
 import { fileURLToPath } from 'node:url';
 import { promisify } from 'node:util';
@@ -116,11 +116,14 @@ export async function fileExists(path: string): Promise<boolean> {
 /**
  * Strip legacy <!-- CLEO:START -->...<!-- CLEO:END --> blocks from a file.
  * Called before CAAMP injection to prevent competing blocks.
+ *
+ * Handles both bare markers (<!-- CLEO:START -->) and versioned markers
+ * (<!-- CLEO:START v0.53.4 -->, <!-- CLEO:START v1.2.3 -->).
  */
 export async function stripCLEOBlocks(filePath: string): Promise<void> {
   if (!existsSync(filePath)) return;
   const content = await readFile(filePath, 'utf8');
-  const stripped = content.replace(/\n?<!-- CLEO:START -->[\s\S]*?<!-- CLEO:END -->\n?/g, '');
+  const stripped = content.replace(/\n?<!-- CLEO:START[^>]*-->[\s\S]*?<!-- CLEO:END -->\n?/g, '');
   if (stripped !== content) await writeFile(filePath, stripped, 'utf8');
 }
 
@@ -523,7 +526,7 @@ export async function ensureProjectContext(
   try {
     const schemaPath = join(
       dirname(fileURLToPath(import.meta.url)),
-      '../../schemas/project-context.schema.json',
+      '../schemas/project-context.schema.json',
     );
     if (existsSync(schemaPath)) {
       const AjvModule = await import('ajv');
@@ -1037,13 +1040,51 @@ export function checkMemoryBridge(projectRoot: string): CheckResult {
  * Required subdirectories under the global ~/.cleo/ home.
  * These are infrastructure directories managed by CLEO itself,
  * not project-specific data.
+ *
+ * Truly global:
+ *   - logs      — global log output
+ *   - templates — CLEO-INJECTION.md symlink target
+ *
+ * Note: nexus.db lives directly in ~/.cleo/, not a subdir.
+ * Schemas are read at runtime from getPackageRoot()/schemas/ — no copy needed.
+ * Project-level dirs (adrs/, rcasd/, agent-outputs/, backups/) live in .cleo/ only.
+ */
+export const REQUIRED_GLOBAL_SUBDIRS = ['logs', 'templates'] as const;
+
+/**
+ * Stale entries that must NOT exist at the global ~/.cleo/ level.
+ * These were project-level artefacts accidentally placed in the global home
+ * by old versions of CLEO. They are safe to remove because:
+ *   - adrs/, rcasd/, agent-outputs/, backups/ — project-level, live in .cleo/
+ *   - sandbox/                                — unused
+ *   - tasks.db / tasks.db-shm / tasks.db-wal  — project-level database files
+ *   - brain-worker.pid                         — stale PID file
+ *   - VERSION                                  — redundant (read from package.json)
+ *   - schemas/                                 — now read from npm binary at runtime
+ *   - bin/                                     — stale dev symlink directory
  */
-export const REQUIRED_GLOBAL_SUBDIRS = ['schemas', 'templates'] as const;
+export const STALE_GLOBAL_ENTRIES = [
+  'adrs',
+  'rcasd',
+  'agent-outputs',
+  'backups',
+  'sandbox',
+  'tasks.db',
+  'tasks.db-shm',
+  'tasks.db-wal',
+  'brain-worker.pid',
+  'VERSION',
+  'schemas',
+  'bin',
+] as const;
 
 /**
  * Ensure the global ~/.cleo/ home directory and its required
  * subdirectories exist. Idempotent: skips directories that already exist.
  *
+ * Also removes known stale project-level entries that old CLEO versions
+ * incorrectly placed at the global level (see STALE_GLOBAL_ENTRIES).
+ *
  * This is the SSoT for global home scaffolding, replacing raw mkdirSync
  * calls that were previously scattered across global-bootstrap.ts.
  */
@@ -1057,6 +1098,23 @@ export async function ensureGlobalHome(): Promise<ScaffoldResult> {
     await mkdir(join(cleoHome, subdir), { recursive: true });
   }
 
+  // Remove stale project-level entries from global home (one-time cleanup).
+  for (const stale of STALE_GLOBAL_ENTRIES) {
+    const stalePath = join(cleoHome, stale);
+    if (existsSync(stalePath)) {
+      try {
+        await rm(stalePath, { recursive: true, force: true });
+        // eslint-disable-next-line no-console
+        console.warn(`[CLEO] Removed stale global entry: ${stalePath}`);
+      } catch (err) {
+        // eslint-disable-next-line no-console
+        console.warn(
+          `[CLEO] Could not remove stale global entry ${stalePath}: ${err instanceof Error ? err.message : String(err)}`,
+        );
+      }
+    }
+  }
+
   return {
     action: alreadyExists ? 'skipped' : 'created',
     path: cleoHome,
@@ -1111,9 +1169,13 @@ export async function ensureGlobalTemplates(): Promise<ScaffoldResult> {
 }
 
 /**
- * Perform a complete global scaffold operation: ensure home, schemas,
- * and templates are all present and current. This is the single entry
- * point for global infrastructure scaffolding.
+ * Perform a complete global scaffold operation: ensure home and templates
+ * are all present and current. This is the single entry point for global
+ * infrastructure scaffolding.
+ *
+ * Schemas are NOT copied here — they are read at runtime from the npm
+ * package path (getPackageRoot() + '/schemas/'). Use ensureGlobalSchemas()
+ * explicitly from init or upgrade if a copy is needed for a specific workflow.
  *
  * Used by:
  *   - MCP startup (via startupHealthCheck in health.ts)
@@ -1122,17 +1184,12 @@ export async function ensureGlobalTemplates(): Promise<ScaffoldResult> {
  */
 export async function ensureGlobalScaffold(): Promise<{
   home: ScaffoldResult;
-  schemas: { installed: number; updated: number; total: number };
   templates: ScaffoldResult;
 }> {
-  // Lazy import to avoid circular dependency
-  const { ensureGlobalSchemas } = await import('./schema-management.js');
-
   const home = await ensureGlobalHome();
-  const schemas = ensureGlobalSchemas();
   const templates = await ensureGlobalTemplates();
 
-  return { home, schemas, templates };
+  return { home, templates };
 }
 
 // ── Global check* functions (read-only diagnostics) ──────────────────

package/src/sessions/__tests__/briefing.test.js

@@ -17,6 +17,11 @@ vi.mock('../../store/data-accessor.js', () => ({
 vi.mock('../handoff.js', () => ({
     getLastHandoff: vi.fn().mockResolvedValue(null),
 }));
+// Mock lifecycle pipeline — computePipelineStage dynamically imports this
+let mockPipeline = null;
+vi.mock('../../lifecycle/pipeline.js', () => ({
+    getPipeline: vi.fn().mockImplementation(() => Promise.resolve(mockPipeline)),
+}));
 import { getAccessor } from '../../store/data-accessor.js';
 import { computeBriefing } from '../briefing.js';
 // ---------------------------------------------------------------------------
@@ -287,13 +292,34 @@ describe('computeBriefing scope filtering', () => {
         expect(briefing.currentTask.id).toBe('T101');
         expect(briefing.currentTask.title).toBe('Child 1');
     });
-    it('pipelineStage is included when metadata has lifecycle state', async () => {
-        setupMockAccessor(makeMockTasks(), { lifecycleState: 'implementation' });
+    it('pipelineStage is included when active lifecycle pipeline exists', async () => {
+        // Mock the lifecycle pipeline BEFORE calling computeBriefing
+        mockPipeline = { currentStage: 'implementation', status: 'active', isActive: true };
+        // Set up focus state pointing to a task that has a pipeline
+        const focus = { currentTask: 'T100', currentPhase: null };
+        const metaStore = { focus_state: focus };
+        const tasks = makeMockTasks();
+        const mockAccessor = {
+            loadSessions: vi.fn().mockResolvedValue([]),
+            queryTasks: vi.fn().mockResolvedValue({ tasks, total: tasks.length }),
+            getMetaValue: vi
+                .fn()
+                .mockImplementation((key) => Promise.resolve(metaStore[key] ?? null)),
+            setMetaValue: vi.fn().mockResolvedValue(undefined),
+            loadArchive: vi.fn().mockResolvedValue(null),
+            saveArchive: vi.fn().mockResolvedValue(undefined),
+            appendLog: vi.fn().mockResolvedValue(undefined),
+            close: vi.fn().mockResolvedValue(undefined),
+            engine: 'sqlite',
+        };
+        getAccessor.mockResolvedValue(mockAccessor);
         const briefing = await computeBriefing('/fake/project', {
             scope: 'global',
         });
         expect(briefing.pipelineStage).toBeDefined();
         expect(briefing.pipelineStage.currentStage).toBe('implementation');
+        // Reset
+        mockPipeline = null;
     });
     it('blocked tasks include those with unresolved dependencies', async () => {
         setupMockAccessor();

package/src/sessions/__tests__/briefing.test.js.map

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package/src/skills/__tests__/routing-table.test.js

@@ -1,37 +1,12 @@
 import { describe, expect, it } from 'vitest';
-import { getOperationsByChannel, getPreferredChannel, getRoutingForDomain, ROUTING_TABLE, } from '../routing-table.js';
+import { getOperationsByChannel, getPreferredChannel, getRoutingForDomain, } from '../routing-table.js';
 describe('routing-table', () => {
-    describe('ROUTING_TABLE structure', () => {
-        it('has entries for all 10 canonical domains', () => {
-            const domains = new Set(ROUTING_TABLE.map((e) => e.domain));
-            expect(domains.has('memory')).toBe(true);
-            expect(domains.has('tasks')).toBe(true);
-            expect(domains.has('session')).toBe(true);
-            expect(domains.has('admin')).toBe(true);
-            expect(domains.has('tools')).toBe(true);
-            expect(domains.has('check')).toBe(true);
-            expect(domains.has('pipeline')).toBe(true);
-            expect(domains.has('orchestrate')).toBe(true);
-            expect(domains.has('nexus')).toBe(true);
-            expect(domains.has('sticky')).toBe(true);
-        });
-        it('every entry has required fields', () => {
-            for (const entry of ROUTING_TABLE) {
-                expect(entry.domain).toBeTruthy();
-                expect(entry.operation).toBeTruthy();
-                expect(['mcp', 'cli', 'either']).toContain(entry.preferredChannel);
-                expect(entry.reason).toBeTruthy();
-            }
+    describe('getPreferredChannel (via capability matrix)', () => {
+        it('returns mcp for memory.find', () => {
+            expect(getPreferredChannel('memory', 'find')).toBe('mcp');
         });
-        it('has no duplicate domain+operation pairs', () => {
-            const keys = ROUTING_TABLE.map((e) => `${e.domain}.${e.operation}`);
-            const unique = new Set(keys);
-            expect(unique.size).toBe(keys.length);
-        });
-    });
-    describe('getPreferredChannel', () => {
-        it('returns mcp for memory.brain.search', () => {
-            expect(getPreferredChannel('memory', 'brain.search')).toBe('mcp');
+        it('returns mcp for memory.fetch', () => {
+            expect(getPreferredChannel('memory', 'fetch')).toBe('mcp');
         });
         it('returns cli for pipeline.release.ship', () => {
             expect(getPreferredChannel('pipeline', 'release.ship')).toBe('cli');
@@ -42,13 +17,49 @@ describe('routing-table', () => {
         it('returns either for unknown operations', () => {
             expect(getPreferredChannel('nonexistent', 'op')).toBe('either');
         });
+        it('returns mcp for tasks.show', () => {
+            expect(getPreferredChannel('tasks', 'show')).toBe('mcp');
+        });
+        it('returns mcp for session.status', () => {
+            expect(getPreferredChannel('session', 'status')).toBe('mcp');
+        });
+        it('returns mcp for admin.dash', () => {
+            expect(getPreferredChannel('admin', 'dash')).toBe('mcp');
+        });
     });
     describe('getRoutingForDomain', () => {
+        it('returns entries covering all 10 canonical domains', () => {
+            const domains = [
+                'memory',
+                'tasks',
+                'session',
+                'admin',
+                'tools',
+                'check',
+                'pipeline',
+                'orchestrate',
+                'nexus',
+                'sticky',
+            ];
+            for (const domain of domains) {
+                const entries = getRoutingForDomain(domain);
+                expect(entries.length).toBeGreaterThan(0);
+                expect(entries.every((e) => e.domain === domain)).toBe(true);
+            }
+        });
         it('returns all memory domain entries', () => {
             const entries = getRoutingForDomain('memory');
             expect(entries.length).toBeGreaterThan(0);
             expect(entries.every((e) => e.domain === 'memory')).toBe(true);
         });
+        it('every entry has required fields with valid channel', () => {
+            const entries = getRoutingForDomain('tasks');
+            for (const entry of entries) {
+                expect(entry.domain).toBeTruthy();
+                expect(entry.operation).toBeTruthy();
+                expect(['mcp', 'cli', 'either']).toContain(entry.preferredChannel);
+            }
+        });
         it('returns empty array for unknown domain', () => {
             expect(getRoutingForDomain('nonexistent')).toEqual([]);
         });
@@ -69,6 +80,12 @@ describe('routing-table', () => {
             const cliCount = getOperationsByChannel('cli').length;
             expect(mcpCount).toBeGreaterThan(cliCount);
         });
+        it('has no duplicate domain+operation pairs within a channel', () => {
+            const mcpOps = getOperationsByChannel('mcp');
+            const keys = mcpOps.map((e) => `${e.domain}.${e.operation}`);
+            const unique = new Set(keys);
+            expect(unique.size).toBe(keys.length);
+        });
     });
 });
 //# sourceMappingURL=routing-table.test.js.map

package/src/skills/__tests__/routing-table.test.js.map

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package/src/skills/__tests__/routing-table.test.ts

@@ -3,44 +3,16 @@ import {
   getOperationsByChannel,
   getPreferredChannel,
   getRoutingForDomain,
-  ROUTING_TABLE,
 } from '../routing-table.js';
 
 describe('routing-table', () => {
-  describe('ROUTING_TABLE structure', () => {
-    it('has entries for all 10 canonical domains', () => {
-      const domains = new Set(ROUTING_TABLE.map((e) => e.domain));
-      expect(domains.has('memory')).toBe(true);
-      expect(domains.has('tasks')).toBe(true);
-      expect(domains.has('session')).toBe(true);
-      expect(domains.has('admin')).toBe(true);
-      expect(domains.has('tools')).toBe(true);
-      expect(domains.has('check')).toBe(true);
-      expect(domains.has('pipeline')).toBe(true);
-      expect(domains.has('orchestrate')).toBe(true);
-      expect(domains.has('nexus')).toBe(true);
-      expect(domains.has('sticky')).toBe(true);
-    });
-
-    it('every entry has required fields', () => {
-      for (const entry of ROUTING_TABLE) {
-        expect(entry.domain).toBeTruthy();
-        expect(entry.operation).toBeTruthy();
-        expect(['mcp', 'cli', 'either']).toContain(entry.preferredChannel);
-        expect(entry.reason).toBeTruthy();
-      }
+  describe('getPreferredChannel (via capability matrix)', () => {
+    it('returns mcp for memory.find', () => {
+      expect(getPreferredChannel('memory', 'find')).toBe('mcp');
     });
 
-    it('has no duplicate domain+operation pairs', () => {
-      const keys = ROUTING_TABLE.map((e) => `${e.domain}.${e.operation}`);
-      const unique = new Set(keys);
-      expect(unique.size).toBe(keys.length);
-    });
-  });
-
-  describe('getPreferredChannel', () => {
-    it('returns mcp for memory.brain.search', () => {
-      expect(getPreferredChannel('memory', 'brain.search')).toBe('mcp');
+    it('returns mcp for memory.fetch', () => {
+      expect(getPreferredChannel('memory', 'fetch')).toBe('mcp');
     });
 
     it('returns cli for pipeline.release.ship', () => {
@@ -54,15 +26,56 @@ describe('routing-table', () => {
     it('returns either for unknown operations', () => {
       expect(getPreferredChannel('nonexistent', 'op')).toBe('either');
     });
+
+    it('returns mcp for tasks.show', () => {
+      expect(getPreferredChannel('tasks', 'show')).toBe('mcp');
+    });
+
+    it('returns mcp for session.status', () => {
+      expect(getPreferredChannel('session', 'status')).toBe('mcp');
+    });
+
+    it('returns mcp for admin.dash', () => {
+      expect(getPreferredChannel('admin', 'dash')).toBe('mcp');
+    });
   });
 
   describe('getRoutingForDomain', () => {
+    it('returns entries covering all 10 canonical domains', () => {
+      const domains = [
+        'memory',
+        'tasks',
+        'session',
+        'admin',
+        'tools',
+        'check',
+        'pipeline',
+        'orchestrate',
+        'nexus',
+        'sticky',
+      ];
+      for (const domain of domains) {
+        const entries = getRoutingForDomain(domain);
+        expect(entries.length).toBeGreaterThan(0);
+        expect(entries.every((e) => e.domain === domain)).toBe(true);
+      }
+    });
+
     it('returns all memory domain entries', () => {
       const entries = getRoutingForDomain('memory');
       expect(entries.length).toBeGreaterThan(0);
       expect(entries.every((e) => e.domain === 'memory')).toBe(true);
     });
 
+    it('every entry has required fields with valid channel', () => {
+      const entries = getRoutingForDomain('tasks');
+      for (const entry of entries) {
+        expect(entry.domain).toBeTruthy();
+        expect(entry.operation).toBeTruthy();
+        expect(['mcp', 'cli', 'either']).toContain(entry.preferredChannel);
+      }
+    });
+
     it('returns empty array for unknown domain', () => {
       expect(getRoutingForDomain('nonexistent')).toEqual([]);
     });
@@ -86,5 +99,12 @@ describe('routing-table', () => {
       const cliCount = getOperationsByChannel('cli').length;
       expect(mcpCount).toBeGreaterThan(cliCount);
     });
+
+    it('has no duplicate domain+operation pairs within a channel', () => {
+      const mcpOps = getOperationsByChannel('mcp');
+      const keys = mcpOps.map((e) => `${e.domain}.${e.operation}`);
+      const unique = new Set(keys);
+      expect(unique.size).toBe(keys.length);
+    });
   });
 });

package/src/skills/agents/install.ts

@@ -9,10 +9,18 @@
  */
 
 import { existsSync, mkdirSync, readdirSync, readlinkSync, symlinkSync, unlinkSync } from 'node:fs';
+import { platform } from 'node:os';
 import { basename, join } from 'node:path';
 import { getClaudeAgentsDir } from '../../paths.js';
 import { getAgentsDir } from './config.js';
 
+/**
+ * Symlink type for directory symlinks.
+ * On Windows, use 'junction' (no admin privileges required).
+ * On Unix, use 'dir'.
+ */
+const DIR_SYMLINK_TYPE: 'junction' | 'dir' = platform() === 'win32' ? 'junction' : 'dir';
+
 // ============================================================================
 // Agent Installation
 // ============================================================================
@@ -65,7 +73,7 @@ export function installAgent(agentDir: string): {
   }
 
   try {
-    symlinkSync(agentDir, targetPath, 'dir');
+    symlinkSync(agentDir, targetPath, DIR_SYMLINK_TYPE);
     return { installed: true, path: targetPath };
   } catch (err) {
     return { installed: false, path: targetPath, error: `Symlink failed: ${err}` };