@cleocode/core 2026.3.41 → 2026.3.43

package/dist/observability/log-reader.d.ts

@@ -0,0 +1,35 @@
+/**
+ * Log file discovery and reading.
+ *
+ * Discovers pino log files in .cleo/logs/ directories,
+ * reads them synchronously or via async streaming.
+ *
+ * @task T5187
+ * @epic T5186
+ */
+import type { LogDiscoveryOptions, LogFileInfo } from './types.js';
+/**
+ * Get the project log directory path.
+ * Uses getLogDir() from logger if available, falls back to config-based resolution.
+ */
+export declare function getProjectLogDir(cwd?: string): string | null;
+/**
+ * Get the global log directory path (~/.cleo/logs/).
+ */
+export declare function getGlobalLogDir(): string;
+/**
+ * Discover all log files in the specified scope.
+ * Returns file info sorted by date (newest first).
+ */
+export declare function discoverLogFiles(options?: LogDiscoveryOptions, cwd?: string): LogFileInfo[];
+/**
+ * Read all lines from a log file synchronously.
+ * Returns raw JSON strings (one per line). Suitable for small-to-medium files.
+ */
+export declare function readLogFileLines(filePath: string): string[];
+/**
+ * Create an async iterable over lines of a log file.
+ * Suitable for large files -- does not load entire file into memory.
+ */
+export declare function streamLogFileLines(filePath: string): AsyncGenerator<string>;
+//# sourceMappingURL=log-reader.d.ts.map

package/dist/observability/log-reader.d.ts.map

@@ -0,0 +1 @@
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package/dist/observability/types.d.ts

@@ -0,0 +1,112 @@
+/**
+ * Type definitions for the CLEO log reader (observability) module.
+ *
+ * Covers pino JSONL log entry parsing, file discovery, filtering,
+ * and query results.
+ *
+ * @task T5187
+ * @epic T5186
+ */
+/** Pino log levels as written by CLEO's logger (uppercase). */
+export type PinoLevel = 'TRACE' | 'DEBUG' | 'INFO' | 'WARN' | 'ERROR' | 'FATAL';
+/** Numeric pino level values for comparison. */
+export declare const PINO_LEVEL_VALUES: Record<PinoLevel, number>;
+/**
+ * A parsed pino log entry from a CLEO log file.
+ * Core fields are always present; additional fields are captured in `extra`.
+ */
+export interface PinoLogEntry {
+    /** Uppercase log level */
+    level: PinoLevel;
+    /** ISO 8601 UTC timestamp */
+    time: string;
+    /** Process ID */
+    pid: number;
+    /** Machine hostname */
+    hostname: string;
+    /** Human-readable log message */
+    msg: string;
+    /** Logical subsystem name (from child logger) */
+    subsystem?: string;
+    /** CLEO error code (on warn/error entries) */
+    code?: string;
+    /** Numeric exit code (on warn/error entries) */
+    exitCode?: number;
+    /** Any additional fields not in the core schema */
+    extra: Record<string, unknown>;
+}
+/** Metadata about a discovered log file. */
+export interface LogFileInfo {
+    /** Absolute path to the log file */
+    path: string;
+    /** File name (e.g., 'cleo.2026-02-28.1.log') */
+    name: string;
+    /** File size in bytes */
+    size: number;
+    /** Last modification time (ISO string) */
+    mtime: string;
+    /** Parsed date from filename, or null if unparseable */
+    date: string | null;
+    /** Whether this is the currently active (latest) log file */
+    isActive: boolean;
+}
+/**
+ * Filter criteria for log queries.
+ * All fields are optional; when multiple are provided, they are ANDed.
+ */
+export interface LogFilter {
+    /** Minimum log level (inclusive). E.g., 'WARN' returns WARN + ERROR + FATAL */
+    minLevel?: PinoLevel;
+    /** Exact log level match */
+    level?: PinoLevel;
+    /** Start time (inclusive, ISO 8601) */
+    since?: string;
+    /** End time (inclusive, ISO 8601) */
+    until?: string;
+    /** Filter by subsystem name (exact match) */
+    subsystem?: string;
+    /** Filter by CLEO error code (exact match) */
+    code?: string;
+    /** Filter by exit code (exact match) */
+    exitCode?: number;
+    /** Text search in msg field (case-insensitive substring) */
+    msgContains?: string;
+    /** Filter by PID */
+    pid?: number;
+    /** Maximum entries to return */
+    limit?: number;
+    /** Number of entries to skip (for pagination) */
+    offset?: number;
+}
+/** Result of a log query operation. */
+export interface LogQueryResult {
+    /** Matched entries */
+    entries: PinoLogEntry[];
+    /** Total entries scanned (before limit/offset) */
+    totalScanned: number;
+    /** Total entries matching filters (before limit/offset) */
+    totalMatched: number;
+    /** Files that were read */
+    files: string[];
+}
+/** Options for discovering log files. */
+export interface LogDiscoveryOptions {
+    /** Which log directory to scan: 'project', 'global', or 'both' (default: 'project') */
+    scope?: 'project' | 'global' | 'both';
+    /** Only include files modified after this date (ISO 8601) */
+    since?: string;
+    /** Include migration log files (default: false) */
+    includeMigration?: boolean;
+}
+/** Summary of log activity across files. */
+export interface LogSummary {
+    totalEntries: number;
+    byLevel: Record<string, number>;
+    bySubsystem: Record<string, number>;
+    dateRange: {
+        earliest: string;
+        latest: string;
+    } | null;
+    files: LogFileInfo[];
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/observability/types.d.ts.map

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package/dist/orchestration/analyze.d.ts

@@ -0,0 +1,57 @@
+/**
+ * Dependency analysis for orchestration.
+ *
+ * Provides dependency graph building, circular dependency detection (DFS),
+ * and missing dependency identification for epic task hierarchies.
+ *
+ * @task T5702
+ */
+import type { Task } from '@cleocode/contracts';
+/** A circular dependency cycle found via DFS traversal. */
+export type CircularDependency = string[];
+/** A missing dependency reference within an epic. */
+export interface MissingDependency {
+    taskId: string;
+    missingDep: string;
+}
+/** Full dependency analysis result for an epic. */
+export interface DependencyAnalysis {
+    dependencyGraph: Record<string, string[]>;
+    circularDependencies: CircularDependency[];
+    missingDependencies: MissingDependency[];
+}
+/**
+ * Build a dependency graph for a set of tasks.
+ *
+ * Returns a Map from task ID to the set of task IDs it depends on.
+ */
+export declare function buildDependencyGraph(tasks: Task[]): Map<string, Set<string>>;
+/**
+ * Detect circular dependencies using DFS traversal.
+ *
+ * @param tasks - The set of tasks to analyze
+ * @param graph - Pre-built dependency graph (optional; built from tasks if not provided)
+ * @returns Array of circular dependency cycles (each cycle is an array of task IDs)
+ */
+export declare function detectCircularDependencies(tasks: Task[], graph?: Map<string, Set<string>>): CircularDependency[];
+/**
+ * Find missing dependencies — deps that reference tasks outside the epic
+ * that are not yet completed.
+ *
+ * @param children - Child tasks of the epic
+ * @param allTasks - All tasks in the project (to check if deps are completed elsewhere)
+ * @returns Array of missing dependency references
+ */
+export declare function findMissingDependencies(children: Task[], allTasks: Task[]): MissingDependency[];
+/**
+ * Perform full dependency analysis for an epic's children.
+ *
+ * Combines dependency graph building, circular detection, and missing dep
+ * identification into a single analysis result.
+ *
+ * @param children - Child tasks of the epic
+ * @param allTasks - All tasks in the project
+ * @returns Complete dependency analysis
+ */
+export declare function analyzeDependencies(children: Task[], allTasks: Task[]): DependencyAnalysis;
+//# sourceMappingURL=analyze.d.ts.map

package/dist/orchestration/analyze.d.ts.map

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package/dist/orchestration/bootstrap.d.ts

@@ -0,0 +1,12 @@
+/**
+ * Bootstrap brain state loading for agent startup.
+ * Calls other core modules directly (not engine functions).
+ * @task T4784
+ */
+import type { BrainState } from '@cleocode/contracts';
+import type { DataAccessor } from '../store/data-accessor.js';
+/** Build brain state for agent bootstrapping. */
+export declare function buildBrainState(projectRoot: string, opts?: {
+    speed?: 'fast' | 'full' | 'complete';
+}, accessor?: DataAccessor): Promise<BrainState>;
+//# sourceMappingURL=bootstrap.d.ts.map

package/dist/orchestration/bootstrap.d.ts.map

@@ -0,0 +1 @@
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package/dist/orchestration/context.d.ts

@@ -0,0 +1,38 @@
+/**
+ * Context estimation for orchestration.
+ *
+ * Estimates token usage and provides context budget recommendations
+ * for orchestrator operations.
+ *
+ * @task T5702
+ */
+/** Context estimation result. */
+export interface ContextEstimation {
+    epicId: string | null;
+    taskCount: number;
+    manifestEntries: number;
+    estimatedTokens: number;
+    recommendation: string;
+    limits: {
+        orchestratorBudget: number;
+        maxFilesPerAgent: number;
+        currentUsage: number;
+    };
+}
+/**
+ * Count manifest entries from MANIFEST.jsonl.
+ *
+ * @param projectRoot - The project root directory
+ * @returns Number of manifest entries
+ */
+export declare function countManifestEntries(projectRoot: string): number;
+/**
+ * Estimate context usage for orchestration.
+ *
+ * @param taskCount - Number of tasks to estimate for
+ * @param projectRoot - The project root directory
+ * @param epicId - Optional epic ID for scoped estimation
+ * @returns Context estimation with recommendations
+ */
+export declare function estimateContext(taskCount: number, projectRoot: string, epicId?: string): ContextEstimation;
+//# sourceMappingURL=context.d.ts.map

package/dist/orchestration/context.d.ts.map

@@ -0,0 +1 @@
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package/dist/orchestration/critical-path.d.ts

@@ -0,0 +1,22 @@
+/**
+ * Critical path analysis for task dependency graphs.
+ * @task T4784
+ */
+import type { DataAccessor } from '../store/data-accessor.js';
+export interface CriticalPathNode {
+    taskId: string;
+    title: string;
+    status: string;
+    size: string;
+    blockerCount: number;
+}
+export interface CriticalPathResult {
+    path: CriticalPathNode[];
+    length: number;
+    totalEffort: number;
+    completedInPath: number;
+    remainingInPath: number;
+}
+/** Find the critical path (longest dependency chain) in the task graph. */
+export declare function getCriticalPath(cwd?: string, accessor?: DataAccessor): Promise<CriticalPathResult>;
+//# sourceMappingURL=critical-path.d.ts.map

package/dist/orchestration/critical-path.d.ts.map

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package/dist/orchestration/index.d.ts

@@ -0,0 +1,116 @@
+/**
+ * Orchestrator commands - coordinate multi-agent workflows.
+ * @task T4466
+ * @epic T4454
+ */
+import type { Task, TaskRef } from '@cleocode/contracts';
+import type { DataAccessor } from '../store/data-accessor.js';
+export type { CircularDependency, DependencyAnalysis, MissingDependency } from './analyze.js';
+export { analyzeDependencies, buildDependencyGraph, detectCircularDependencies, findMissingDependencies, } from './analyze.js';
+export type { ContextEstimation } from './context.js';
+export { countManifestEntries, estimateContext } from './context.js';
+export type { EpicStatus, OverallStatus, ProgressMetrics, StartupSummary, StatusCounts, } from './status.js';
+export { computeEpicStatus, computeOverallStatus, computeProgress, computeStartupSummary, countByStatus, } from './status.js';
+/** Orchestrator session state. */
+export interface OrchestratorSession {
+    epicId: string;
+    startedAt: string;
+    status: 'active' | 'paused' | 'completed';
+    currentWave: number;
+    completedTasks: string[];
+    spawnedAgents: string[];
+}
+/** Spawn context for a subagent. */
+export interface SpawnContext {
+    taskId: string;
+    protocol: string;
+    prompt: string;
+    tokenResolution: {
+        fullyResolved: boolean;
+        unresolvedTokens: string[];
+    };
+}
+/** Task readiness assessment. */
+export interface TaskReadiness {
+    taskId: string;
+    title: string;
+    ready: boolean;
+    blockers: string[];
+    protocol: string;
+}
+/** Orchestrator analysis result. */
+export interface AnalysisResult {
+    epicId: string;
+    totalTasks: number;
+    waves: Array<{
+        wave: number;
+        tasks: TaskRef[];
+    }>;
+    readyTasks: string[];
+    blockedTasks: string[];
+    completedTasks: string[];
+}
+/**
+ * Start an orchestrator session for an epic.
+ * @task T4466
+ */
+export declare function startOrchestration(epicId: string, _cwd?: string, accessor?: DataAccessor): Promise<OrchestratorSession>;
+/**
+ * Analyze an epic's dependency structure.
+ * @task T4466
+ */
+export declare function analyzeEpic(epicId: string, cwd?: string, accessor?: DataAccessor): Promise<AnalysisResult>;
+/**
+ * Get parallel-safe ready tasks for an epic.
+ * @task T4466
+ */
+export declare function getReadyTasks(epicId: string, _cwd?: string, accessor?: DataAccessor): Promise<TaskReadiness[]>;
+/**
+ * Get the next task to work on for an epic.
+ * @task T4466
+ */
+export declare function getNextTask(epicId: string, cwd?: string, accessor?: DataAccessor): Promise<TaskReadiness | null>;
+/**
+ * Prepare a spawn context for a subagent.
+ * @task T4466
+ */
+export declare function prepareSpawn(taskId: string, _cwd?: string, accessor?: DataAccessor): Promise<SpawnContext>;
+/**
+ * Validate a subagent's output.
+ * @task T4466
+ */
+export declare function validateSpawnOutput(_taskId: string, output: {
+    file?: string;
+    manifestEntry?: boolean;
+}): Promise<{
+    valid: boolean;
+    errors: string[];
+}>;
+/**
+ * Get orchestrator context summary.
+ * @task T4466
+ */
+export declare function getOrchestratorContext(epicId: string, _cwd?: string, accessor?: DataAccessor): Promise<{
+    epicId: string;
+    epicTitle: string;
+    totalTasks: number;
+    completed: number;
+    inProgress: number;
+    blocked: number;
+    pending: number;
+    completionPercent: number;
+}>;
+/**
+ * Auto-dispatch: determine the protocol for a task based on metadata.
+ * @task T4466
+ */
+export declare function autoDispatch(task: Task): string;
+/**
+ * Resolve tokens in a prompt string.
+ * @task T4466
+ */
+export declare function resolveTokens(prompt: string, context: Record<string, string>): {
+    resolved: string;
+    unresolved: string[];
+};
+//# sourceMappingURL=index.d.ts.map

package/dist/orchestration/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/orchestration/parallel.d.ts

@@ -0,0 +1,35 @@
+/**
+ * Parallel execution state management.
+ * @task T4784
+ */
+import type { DataAccessor } from '../store/data-accessor.js';
+interface ParallelState {
+    active: boolean;
+    epicId?: string;
+    wave?: number;
+    startedAt?: string;
+    tasks?: string[];
+}
+/** Start parallel execution for a wave. */
+export declare function startParallelExecution(epicId: string, wave: number, cwd?: string, accessor?: DataAccessor): Promise<{
+    epicId: string;
+    wave: number;
+    tasks: string[];
+    taskCount: number;
+    startedAt: string;
+}>;
+/** End parallel execution for a wave. */
+export declare function endParallelExecution(epicId: string, wave: number, cwd?: string, accessor?: DataAccessor): Promise<{
+    epicId: string;
+    wave: number;
+    tasks: string[];
+    taskCount: number;
+    startedAt: string | null;
+    endedAt: string;
+    durationMs: number;
+    alreadyEnded?: boolean;
+}>;
+/** Get current parallel execution state. */
+export declare function getParallelStatus(cwd?: string, accessor?: DataAccessor): Promise<ParallelState>;
+export {};
+//# sourceMappingURL=parallel.d.ts.map

package/dist/orchestration/parallel.d.ts.map

@@ -0,0 +1 @@
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package/dist/orchestration/protocol-validators.d.ts

@@ -0,0 +1,96 @@
+/**
+ * Protocol validators for all 9 CLEO protocols.
+ * Validates manifest entries and outputs against protocol requirements.
+ *
+ * @task T4499
+ * @epic T4498
+ */
+import { ExitCode } from '@cleocode/contracts';
+/** Protocol violation entry. */
+export interface ProtocolViolation {
+    requirement: string;
+    severity: 'error' | 'warning';
+    message: string;
+    fix: string;
+}
+/** Protocol validation result. */
+export interface ProtocolValidationResult {
+    valid: boolean;
+    protocol: string;
+    violations: ProtocolViolation[];
+    score: number;
+}
+/** Manifest entry structure for validation. */
+export interface ManifestEntryInput {
+    id?: string;
+    file?: string;
+    title?: string;
+    date?: string;
+    status?: string;
+    agent_type?: string;
+    topics?: string[];
+    key_findings?: string[];
+    actionable?: boolean;
+    needs_followup?: string[];
+    linked_tasks?: string[];
+    sources?: string[];
+}
+/** All supported protocol types. */
+export declare const PROTOCOL_TYPES: readonly ["research", "consensus", "specification", "decomposition", "implementation", "contribution", "release", "artifact-publish", "provenance"];
+export type ProtocolType = (typeof PROTOCOL_TYPES)[number];
+/** Map protocol types to exit codes. */
+export declare const PROTOCOL_EXIT_CODES: Record<ProtocolType, ExitCode>;
+/** @task T4499 */
+export declare function validateResearchProtocol(entry: ManifestEntryInput, options?: {
+    strict?: boolean;
+    hasCodeChanges?: boolean;
+}): ProtocolValidationResult;
+export interface VotingMatrix {
+    options: Array<{
+        name: string;
+        confidence: number;
+        rationale?: string;
+    }>;
+    threshold?: number;
+}
+/** @task T4499 */
+export declare function validateConsensusProtocol(entry: ManifestEntryInput, votingMatrix?: VotingMatrix): ProtocolValidationResult;
+/** @task T4499 */
+export declare function validateSpecificationProtocol(entry: ManifestEntryInput, specContent?: string): ProtocolValidationResult;
+/** @task T4499 */
+export declare function validateDecompositionProtocol(entry: ManifestEntryInput, options?: {
+    siblingCount?: number;
+    descriptionClarity?: boolean;
+    maxSiblings?: number;
+    maxDepth?: number;
+}): ProtocolValidationResult;
+/** @task T4499 */
+export declare function validateImplementationProtocol(entry: ManifestEntryInput, options?: {
+    hasTaskTags?: boolean;
+}): ProtocolValidationResult;
+/** @task T4499 */
+export declare function validateContributionProtocol(entry: ManifestEntryInput, options?: {
+    hasContributionTags?: boolean;
+}): ProtocolValidationResult;
+/** @task T4499 */
+export declare function validateReleaseProtocol(entry: ManifestEntryInput, options?: {
+    version?: string;
+    hasChangelog?: boolean;
+}): ProtocolValidationResult;
+/** @task T4499 */
+export declare function validateArtifactPublishProtocol(entry: ManifestEntryInput, options?: {
+    artifactType?: string;
+    buildPassed?: boolean;
+}): ProtocolValidationResult;
+/** @task T4499 */
+export declare function validateProvenanceProtocol(entry: ManifestEntryInput, options?: {
+    hasAttestation?: boolean;
+    hasSbom?: boolean;
+}): ProtocolValidationResult;
+/**
+ * Validate a manifest entry against a specific protocol.
+ * Throws CleoError with appropriate exit code on strict failure.
+ * @task T4499
+ */
+export declare function validateProtocol(protocol: ProtocolType, entry: ManifestEntryInput, options?: Record<string, unknown>, strict?: boolean): ProtocolValidationResult;
+//# sourceMappingURL=protocol-validators.d.ts.map

package/dist/orchestration/protocol-validators.d.ts.map

@@ -0,0 +1 @@
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package/dist/orchestration/skill-ops.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Skill listing and injection operations.
+ * @task T4784
+ */
+export interface SkillEntry {
+    name: string;
+    path: string;
+    hasSkillFile: boolean;
+    description: string;
+}
+export interface SkillContent {
+    skill: string;
+    content: string;
+    contentLength: number;
+    estimatedTokens: number;
+    references: Array<{
+        name: string;
+        path: string;
+    }>;
+    path: string;
+}
+/** List available skills. */
+export declare function listSkills(_projectRoot: string): {
+    skills: SkillEntry[];
+    total: number;
+};
+/** Read skill content for injection into agent context. */
+export declare function getSkillContent(skillName: string, _projectRoot: string): SkillContent;
+//# sourceMappingURL=skill-ops.d.ts.map

package/dist/orchestration/skill-ops.d.ts.map

@@ -0,0 +1 @@
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