@cleocode/core 2026.3.38 → 2026.3.40

package/src/store/sqlite.ts

@@ -409,10 +409,7 @@ const MIGRATION_RETRY_MAX_DELAY_MS = 2000;
  * @task T4837 - ADR-012 drizzle-kit migration system
  * @task T5185 - Retry+backoff for SQLITE_BUSY during migrations
  */
-function runMigrations(
-  nativeDb: DatabaseSync,
-  db: NodeSQLiteDatabase<typeof schema>,
-): void {
+function runMigrations(nativeDb: DatabaseSync, db: NodeSQLiteDatabase<typeof schema>): void {
   const migrationsFolder = resolveMigrationsFolder();
 
   // If existing DB with pending migrations, create safety backup (cleo compat)
@@ -421,7 +418,9 @@ function runMigrations(
     if (!existsSync(backupPath)) {
       try {
         copyFileSync(_dbPath, backupPath);
-      } catch { /* non-fatal */ }
+      } catch {
+        /* non-fatal */
+      }
     }
   }
 
@@ -545,11 +544,11 @@ export function getNativeTasksDb(): DatabaseSync | null {
   return _nativeDb;
 }
 
+export type { NodeSQLiteDatabase };
 /**
  * Re-export schema for external use.
  */
 export { schema };
-export type { NodeSQLiteDatabase };
 
 /**
  * Close ALL database singletons (tasks.db, brain.db, nexus.db).

package/src/store/status-registry.ts

@@ -4,9 +4,21 @@
  * The canonical status definitions now live in @cleocode/contracts.
  * This file exists for backward compatibility within the store layer.
  */
+
+export type {
+  AdrStatus,
+  EntityType,
+  GateStatus,
+  ManifestStatus,
+  PipelineStatus,
+  SessionStatus,
+  StageStatus,
+  TaskStatus,
+} from '@cleocode/contracts';
 export {
   ADR_STATUSES,
   GATE_STATUSES,
+  isValidStatus,
   LIFECYCLE_PIPELINE_STATUSES,
   LIFECYCLE_STAGE_STATUSES,
   MANIFEST_STATUSES,
@@ -20,16 +32,4 @@ export {
   TERMINAL_PIPELINE_STATUSES,
   TERMINAL_STAGE_STATUSES,
   TERMINAL_TASK_STATUSES,
-  isValidStatus,
-} from '@cleocode/contracts';
-
-export type {
-  AdrStatus,
-  EntityType,
-  GateStatus,
-  ManifestStatus,
-  PipelineStatus,
-  SessionStatus,
-  StageStatus,
-  TaskStatus,
 } from '@cleocode/contracts';

package/src/store/task-store.ts

@@ -8,15 +8,15 @@
  * @task W1-T3
  */
 
-import { and, asc, count, eq, inArray, isNull, ne, sql } from 'drizzle-orm';
 import type { Task, TaskStatus, TaskType } from '@cleocode/contracts';
+import { and, asc, count, eq, inArray, isNull, ne, sql } from 'drizzle-orm';
+import { rowToTask, taskToRow } from './converters.js';
 import {
   type SafetyConfig,
   safeCreateTask,
   safeDeleteTask,
   safeUpdateTask,
 } from './data-safety.js';
-import { rowToTask, taskToRow } from './converters.js';
 import { getDb, getNativeDb } from './sqlite.js';
 import type { TaskRow } from './tasks-schema.js';
 import * as schema from './tasks-schema.js';

package/src/store/tasks-schema.ts

@@ -645,6 +645,56 @@ export const adrRelations = sqliteTable(
   (table) => [primaryKey({ columns: [table.fromAdrId, table.toAdrId, table.relationType] })],
 );
 
+// === EXTERNAL TASK LINKS (provider-agnostic task reconciliation) ===
+
+/**
+ * Tracks links between CLEO tasks and external system tasks (Linear, Jira, GitHub, etc.).
+ * Used by the reconciliation engine to match external tasks to existing CLEO tasks,
+ * detect updates, and maintain bidirectional traceability.
+ *
+ * Each row represents one link: one CLEO task ↔ one external task from one provider.
+ * A CLEO task MAY have links from multiple providers (e.g., both Linear and GitHub).
+ * An external task SHOULD have at most one link per provider.
+ */
+export const externalTaskLinks = sqliteTable(
+  'external_task_links',
+  {
+    id: text('id').primaryKey(),
+    taskId: text('task_id')
+      .notNull()
+      .references(() => tasks.id, { onDelete: 'cascade' }),
+    /** Provider identifier (e.g. 'linear', 'jira', 'github', 'gitlab'). */
+    providerId: text('provider_id').notNull(),
+    /** Provider-assigned identifier for the external task (opaque to CLEO). */
+    externalId: text('external_id').notNull(),
+    /** Optional URL to the external task (for human navigation). */
+    externalUrl: text('external_url'),
+    /** Title of the external task at the time of last sync. */
+    externalTitle: text('external_title'),
+    /** How this link was established. */
+    linkType: text('link_type', {
+      enum: ['created', 'matched', 'manual'],
+    }).notNull(),
+    /** Direction of the sync that created this link. */
+    syncDirection: text('sync_direction', {
+      enum: ['inbound', 'outbound', 'bidirectional'],
+    })
+      .notNull()
+      .default('inbound'),
+    /** Arbitrary provider-specific metadata (JSON). */
+    metadataJson: text('metadata_json').default('{}'),
+    /** When the link was first established. */
+    linkedAt: text('linked_at').notNull().default(sql`(datetime('now'))`),
+    /** When the external task was last synchronized. */
+    lastSyncAt: text('last_sync_at'),
+  },
+  (table) => [
+    index('idx_ext_links_task_id').on(table.taskId),
+    index('idx_ext_links_provider_external').on(table.providerId, table.externalId),
+    index('idx_ext_links_provider_id').on(table.providerId),
+  ],
+);
+
 // === STATUS REGISTRY (ADR-018) ===
 
 export const statusRegistryTable = sqliteTable(
@@ -702,3 +752,5 @@ export type PipelineManifestRow = typeof pipelineManifest.$inferSelect;
 export type NewPipelineManifestRow = typeof pipelineManifest.$inferInsert;
 export type ReleaseManifestRow = typeof releaseManifests.$inferSelect;
 export type NewReleaseManifestRow = typeof releaseManifests.$inferInsert;
+export type ExternalTaskLinkRow = typeof externalTaskLinks.$inferSelect;
+export type NewExternalTaskLinkRow = typeof externalTaskLinks.$inferInsert;

package/src/store/validation-schemas.ts

@@ -16,8 +16,10 @@ import { z } from 'zod/v4';
 // the same z we use everywhere. The type assertion is needed because
 // drizzle-orm beta.18's CoerceOptions type doesn't match zod/v4's coerce
 // namespace shape (works correctly at runtime).
-// eslint-disable-next-line @typescript-eslint/no-explicit-any
-const { createInsertSchema, createSelectSchema } = createSchemaFactory(z as any);
+const { createInsertSchema, createSelectSchema } = createSchemaFactory(
+  z as unknown as Parameters<typeof createSchemaFactory>[0],
+);
+
 import {
   architectureDecisions,
   auditLog,

package/src/system/__tests__/cleanup.test.d.ts

@@ -1,2 +1,2 @@
 export {};
-//# sourceMappingURL=cleanup.test.d.ts.map
+//# sourceMappingURL=cleanup.test.d.ts.map

package/src/system/__tests__/health.test.d.ts

@@ -1,2 +1,2 @@
 export {};
-//# sourceMappingURL=health.test.d.ts.map
+//# sourceMappingURL=health.test.d.ts.map

package/src/system/archive-analytics.ts

@@ -8,9 +8,9 @@
  * @epic T4545
  */
 
+import type { Task } from '@cleocode/contracts';
 import type { DataAccessor } from '../store/data-accessor.js';
 import { getAccessor } from '../store/data-accessor.js';
-import type { Task } from '@cleocode/contracts';
 
 // ---------------------------------------------------------------------------
 // Types

package/src/system/health.ts

@@ -9,7 +9,6 @@ import { existsSync, readFileSync, statSync } from 'node:fs';
 import { createRequire } from 'node:module';
 import { join } from 'node:path';
 import { promisify } from 'node:util';
-import { getAccessor } from '../store/data-accessor.js';
 import { checkGitHooks, type HookCheckResult } from '../hooks.js';
 import { checkInjection } from '../injection.js';
 import { getAgentsHome, isProjectInitialized } from '../paths.js';
@@ -29,6 +28,7 @@ import {
   ensureGlobalScaffold,
 } from '../scaffold.js';
 import { checkGlobalSchemas, type CheckResult as SchemaCheckResult } from '../schema-management.js';
+import { getAccessor } from '../store/data-accessor.js';
 import {
   type CheckResult,
   checkCleoGitignore,
@@ -587,7 +587,7 @@ export async function coreDoctorReport(projectRoot: string): Promise<DoctorRepor
     try {
       const accessor = await getAccessor(projectRoot);
       const taskCount = await accessor.countTasks();
-      const schemaVersion = await accessor.getMetaValue<string>('schemaVersion') ?? 'unknown';
+      const schemaVersion = (await accessor.getMetaValue<string>('schemaVersion')) ?? 'unknown';
       checks.push({
         check: 'tasks_db_data',
         status: 'ok',
@@ -752,9 +752,7 @@ export async function coreDoctorReport(projectRoot: string): Promise<DoctorRepor
       message: existsSync(gitHubTemplatesDir)
         ? '.github/ISSUE_TEMPLATE/ present'
         : '.github/ISSUE_TEMPLATE/ not found — run: cleo init or cleo upgrade',
-      ...(existsSync(gitHubTemplatesDir)
-        ? {}
-        : { fix: 'cleo init' }),
+      ...(existsSync(gitHubTemplatesDir) ? {} : { fix: 'cleo init' }),
     });
   }
 

package/src/system/index.ts

@@ -4,8 +4,8 @@
  */
 
 export type {
-  AnalyzeArchiveOptions,
   AnalyticsTask,
+  AnalyzeArchiveOptions,
   ArchiveAnalyticsResult,
   ArchiveMetadata,
   ArchiveReportDataMap,

package/src/system/inject-generate.ts

@@ -5,9 +5,9 @@
 
 import { existsSync, readFileSync } from 'node:fs';
 import { join } from 'node:path';
+import { getSessionsPath } from '../paths.js';
 import type { DataAccessor } from '../store/data-accessor.js';
 import { getAccessor } from '../store/data-accessor.js';
-import { getSessionsPath } from '../paths.js';
 
 export interface InjectGenerateResult {
   injection: string;

package/src/system/labels.ts

@@ -3,10 +3,10 @@
  * @task T4783
  */
 
-import type { DataAccessor } from '../store/data-accessor.js';
-import { getAccessor } from '../store/data-accessor.js';
 import { ExitCode } from '@cleocode/contracts';
 import { CleoError } from '../errors.js';
+import type { DataAccessor } from '../store/data-accessor.js';
+import { getAccessor } from '../store/data-accessor.js';
 
 export interface LabelsResult {
   labels: Array<{ label: string; count: number; tasks: string[] }>;

package/src/system/metrics.ts

@@ -5,8 +5,8 @@
 
 import { existsSync, readFileSync } from 'node:fs';
 import { join } from 'node:path';
-import type { DataAccessor } from '../store/data-accessor.js';
 import { readComplianceJsonl } from '../compliance/store.js';
+import type { DataAccessor } from '../store/data-accessor.js';
 
 export interface SystemMetricsResult {
   tokens: {

package/src/system/migrate.ts

@@ -5,9 +5,9 @@
 
 import { existsSync } from 'node:fs';
 import { join } from 'node:path';
-import { getAccessor } from '../store/data-accessor.js';
 import { ExitCode } from '@cleocode/contracts';
 import { CleoError } from '../errors.js';
+import { getAccessor } from '../store/data-accessor.js';
 
 export interface MigrateResult {
   from: string;

package/src/system/safestop.ts

@@ -5,9 +5,9 @@
 
 import { existsSync, readFileSync, writeFileSync } from 'node:fs';
 import { join } from 'node:path';
-import { getAccessor } from '../store/data-accessor.js';
-import { ExitCode } from '@cleocode/contracts';
+import { ExitCode, type Task } from '@cleocode/contracts';
 import { CleoError } from '../errors.js';
+import { getAccessor } from '../store/data-accessor.js';
 
 export interface SafestopResult {
   stopped: boolean;
@@ -84,7 +84,7 @@ export async function uncancelTask(
   }
 
   const accessor = await getAccessor(projectRoot);
-  let task;
+  let task: Task | null;
   try {
     task = await accessor.loadSingleTask(params.taskId);
   } catch {
@@ -109,7 +109,10 @@ export async function uncancelTask(
     if (params.notes) {
       notes.push(`[${new Date().toISOString()}] ${params.notes}`);
     }
-    await accessor.updateTaskFields(params.taskId, { status: 'pending', notesJson: JSON.stringify(notes) });
+    await accessor.updateTaskFields(params.taskId, {
+      status: 'pending',
+      notesJson: JSON.stringify(notes),
+    });
     if (params.cascade) {
       const children = await accessor.getChildren(params.taskId);
       for (const child of children) {

package/src/task-work/__tests__/start-deps.test.d.ts

@@ -3,4 +3,4 @@
  * @task T5069
  */
 export {};
-//# sourceMappingURL=start-deps.test.d.ts.map
+//# sourceMappingURL=start-deps.test.d.ts.map

package/src/task-work/__tests__/start-deps.test.js

@@ -3,7 +3,7 @@
  * @task T5069
  */
 import { afterEach, beforeEach, describe, expect, it } from 'vitest';
-import { createTestDb, seedTasks, } from '../../store/__tests__/test-db-helper.js';
+import { createTestDb, seedTasks } from '../../store/__tests__/test-db-helper.js';
 import { startTask } from '../index.js';
 describe('startTask dependency enforcement', () => {
     let env;

package/src/task-work/__tests__/start-deps.test.js.map

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package/src/task-work/__tests__/start-deps.test.ts

@@ -4,11 +4,7 @@
  */
 
 import { afterEach, beforeEach, describe, expect, it } from 'vitest';
-import {
-  createTestDb,
-  seedTasks,
-  type TestDbEnv,
-} from '../../store/__tests__/test-db-helper.js';
+import { createTestDb, seedTasks, type TestDbEnv } from '../../store/__tests__/test-db-helper.js';
 import type { DataAccessor } from '../../store/data-accessor.js';
 import { startTask } from '../index.js';
 

package/src/task-work/index.ts

@@ -5,11 +5,11 @@
  * @epic T4454
  */
 
-import type { DataAccessor } from '../store/data-accessor.js';
-import { getAccessor } from '../store/data-accessor.js';
-import { ExitCode } from '@cleocode/contracts';
 import type { TaskWorkState } from '@cleocode/contracts';
+import { ExitCode } from '@cleocode/contracts';
 import { CleoError } from '../errors.js';
+import type { DataAccessor } from '../store/data-accessor.js';
+import { getAccessor } from '../store/data-accessor.js';
 import { logOperation } from '../tasks/add.js';
 import { getUnresolvedDeps } from '../tasks/dependency-check.js';
 
@@ -232,17 +232,3 @@ export async function getWorkHistory(
  * @task T5323
  */
 export const getTaskHistory = getWorkHistory;
-
-// TodoWrite merge
-export {
-  analyzeChanges as analyzeTodoWriteChanges,
-  mergeTodoWriteState,
-} from './todowrite-merge.js';
-export type {
-  ChangeSet as TodoWriteChangeSet,
-  SyncSessionState,
-  TodoWriteItem,
-  TodoWriteMergeOptions,
-  TodoWriteMergeResult,
-  TodoWriteState,
-} from './todowrite-merge.js';

package/src/tasks/__tests__/add.test.d.ts

@@ -4,4 +4,4 @@
  * @epic T4454
  */
 export {};
-//# sourceMappingURL=add.test.d.ts.map
+//# sourceMappingURL=add.test.d.ts.map

package/src/tasks/__tests__/add.test.js.map

@@ -1 +1 @@
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package/src/tasks/__tests__/add.test.ts

@@ -4,10 +4,10 @@
  * @epic T4454
  */
 
+import type { Task } from '@cleocode/contracts';
 import { afterEach, beforeEach, describe, expect, it } from 'vitest';
 import { createTestDb, type TestDbEnv } from '../../store/__tests__/test-db-helper.js';
 import type { DataAccessor } from '../../store/data-accessor.js';
-import type { Task } from '@cleocode/contracts';
 import {
   addTask,
   findRecentDuplicate,
@@ -201,7 +201,11 @@ describe('addTask (integration)', () => {
   });
 
   it('creates a task with default values', async () => {
-    const result = await addTask({ title: 'Test task', description: 'A test task for defaults' }, env.tempDir, accessor);
+    const result = await addTask(
+      { title: 'Test task', description: 'A test task for defaults' },
+      env.tempDir,
+      accessor,
+    );
     expect(result.task.id).toBe('T001');
     expect(result.task.title).toBe('Test task');
     expect(result.task.status).toBe('pending');
@@ -235,37 +239,65 @@ describe('addTask (integration)', () => {
 
   it('generates sequential IDs', async () => {
     const r1 = await addTask({ title: 'Task 1', description: 'First task' }, env.tempDir, accessor);
-    const r2 = await addTask({ title: 'Task 2', description: 'Second task' }, env.tempDir, accessor);
+    const r2 = await addTask(
+      { title: 'Task 2', description: 'Second task' },
+      env.tempDir,
+      accessor,
+    );
     expect(r1.task.id).toBe('T001');
     expect(r2.task.id).toBe('T002');
   });
 
   it('detects duplicates', async () => {
-    await addTask({ title: 'Duplicate me', description: 'Duplicate detection test' }, env.tempDir, accessor);
-    const r2 = await addTask({ title: 'Duplicate me', description: 'Duplicate detection test' }, env.tempDir, accessor);
+    await addTask(
+      { title: 'Duplicate me', description: 'Duplicate detection test' },
+      env.tempDir,
+      accessor,
+    );
+    const r2 = await addTask(
+      { title: 'Duplicate me', description: 'Duplicate detection test' },
+      env.tempDir,
+      accessor,
+    );
     expect(r2.duplicate).toBe(true);
     expect(r2.task.id).toBe('T001'); // Returns existing
   });
 
   it('handles dry run', async () => {
-    const result = await addTask({ title: 'Dry run task', description: 'Testing dry run mode', dryRun: true }, env.tempDir, accessor);
+    const result = await addTask(
+      { title: 'Dry run task', description: 'Testing dry run mode', dryRun: true },
+      env.tempDir,
+      accessor,
+    );
     expect(result.dryRun).toBe(true);
     expect(result.task.id).toBe('T001');
   });
 
   it('validates parent hierarchy', async () => {
     // Create parent
-    await addTask({ title: 'Parent', description: 'Parent epic task', type: 'epic' }, env.tempDir, accessor);
+    await addTask(
+      { title: 'Parent', description: 'Parent epic task', type: 'epic' },
+      env.tempDir,
+      accessor,
+    );
 
     // Create child
-    const child = await addTask({ title: 'Child', description: 'Child of parent epic', parentId: 'T001' }, env.tempDir, accessor);
+    const child = await addTask(
+      { title: 'Child', description: 'Child of parent epic', parentId: 'T001' },
+      env.tempDir,
+      accessor,
+    );
     expect(child.task.parentId).toBe('T001');
     expect(child.task.type).toBe('task');
   });
 
   it('rejects invalid parent', async () => {
     await expect(
-      addTask({ title: 'Child', description: 'Child with invalid parent', parentId: 'T999' }, env.tempDir, accessor),
+      addTask(
+        { title: 'Child', description: 'Child with invalid parent', parentId: 'T999' },
+        env.tempDir,
+        accessor,
+      ),
     ).rejects.toThrow('not found');
   });
 });

package/src/tasks/__tests__/archive.test.d.ts

@@ -4,4 +4,4 @@
  * @epic T4454
  */
 export {};
-//# sourceMappingURL=archive.test.d.ts.map
+//# sourceMappingURL=archive.test.d.ts.map

package/src/tasks/__tests__/archive.test.js

@@ -4,7 +4,7 @@
  * @epic T4454
  */
 import { afterEach, beforeEach, describe, expect, it } from 'vitest';
-import { createTestDb, seedTasks, } from '../../store/__tests__/test-db-helper.js';
+import { createTestDb, seedTasks } from '../../store/__tests__/test-db-helper.js';
 import { archiveTasks } from '../archive.js';
 describe('archiveTasks', () => {
     let env;

package/src/tasks/__tests__/archive.test.js.map

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package/src/tasks/__tests__/archive.test.ts

@@ -5,11 +5,7 @@
  */
 
 import { afterEach, beforeEach, describe, expect, it } from 'vitest';
-import {
-  createTestDb,
-  seedTasks,
-  type TestDbEnv,
-} from '../../store/__tests__/test-db-helper.js';
+import { createTestDb, seedTasks, type TestDbEnv } from '../../store/__tests__/test-db-helper.js';
 import type { DataAccessor } from '../../store/data-accessor.js';
 import { archiveTasks } from '../archive.js';
 
@@ -217,7 +213,7 @@ describe('archiveTasks', () => {
       status: 'done',
       priority: 'medium',
       createdAt: '2025-01-01T00:00:00Z',
-    } as import('../../../types/task.js').Task);
+    } as import('@cleocode/contracts').Task);
 
     await archiveTasks({ taskIds: ['T002'] }, env.tempDir, accessor);