@cleocode/core 2026.11.1-canary.2 → 2026.11.1-canary.4

package/dist/docs/docs-read-model.js

@@ -1,36 +1,3 @@
-/**
- * DocsReadModel — unified read-side query surface for the CLEO docs system.
- *
- * Abstracts the scattered document surfaces (the `attachments` doc registry,
- * manifest.db blobs, and the `docs_publications` store ledger) behind one
- * coherent read API. Agents and CLI command handlers query through this
- * model instead of navigating the individual stores directly.
- *
- * Lookup axes:
- *   - slug          → resolve by stable human-readable slug (from attachments.slug)
- *   - owner         → resolve all docs owned by a task/session/observation
- *   - attachmentId  → resolve by attachment UUID or SHA-256 content address
- *   - blobName      → resolve by blob name within an owner's manifest
- *   - latest        → resolve the latest version for a given slug
- *
- * The read model also surfaces publication status and drift classification
- * from the `docs_publications` store ledger, which is the canonical record
- * of which blobs have been published to git-tracked paths and whether those
- * published files are in-sync with the backing blob store.
- *
- * Content reads are blob-store ONLY (T13362): the legacy
- * `.cleo/attachments/sha256/` byte tree has no fallback path here — docs
- * whose bytes were never mirrored/consolidated into `.cleo/blobs/blobs/`
- * report `no-content` until migrated.
- *
- * @task T11049 (T10516-C2)
- * @epic T10519 (T10516-C)
- * @saga T10516 (SG-DOCS-CLI-SIMPLIFICATION)
- * @see packages/core/src/store/attachment-store.ts (doc registry)
- * @see packages/core/src/store/blob-ops.ts (manifest.db blobs via llmtxt)
- * @see packages/core/src/docs/docs-ops.ts (publications ledger + status)
- */
-import { createHash } from 'node:crypto';
 import { getProjectRoot } from '../paths.js';
 import { createAttachmentStore } from '../store/attachment-store.js';
 import { blobList, blobRead, blobReadBySha } from '../store/blob-ops.js';
@@ -346,73 +313,20 @@ export class DocsReadModel {
     /**
      * Check publication status for all published docs.
      *
-     * Compares the blob SHA in the store against the file SHA on disk
-     * for every row of the `docs_publications` store ledger.
-     * Returns the same shape as `statusDocs()` for backward compatibility.
+     * Delegates to {@link statusDocs} so `cleo docs status`, the doctor and
+     * every other caller share one drift classification (T14135), including the
+     * default-branch and unmerged-worktree cases.
+     *
+     * @param projectRootOverride - Store root (default: the model's project root).
+     * @param checkoutRoot - Where the mirror files are read (default: the store
+     *   root); the invoking CLEO worktree when run from one (T14188).
      */
-    async status(projectRootOverride) {
-        const root = projectRootOverride ?? this.projectRoot;
-        const publications = await this.loadPublications();
-        if (publications.length === 0) {
-            return { items: [], allInSync: true };
-        }
-        const { readFile, stat } = await import('node:fs/promises');
-        const { resolve: resolvePathFn, isAbsolute: isAbs } = await import('node:path');
-        // Build blob sha cache from the manifest
-        const ownerCache = new Map();
-        async function getBlobSha(ownerId, blobName, ledgerSha) {
-            let perOwner = ownerCache.get(ownerId);
-            if (!perOwner) {
-                perOwner = new Map();
-                const rows = await blobList(ownerId, root).catch(() => []);
-                for (const row of rows)
-                    perOwner.set(row.name, row.sha256);
-                ownerCache.set(ownerId, perOwner);
-            }
-            return perOwner.get(blobName) ?? ledgerSha;
-        }
-        const items = [];
-        for (const row of publications) {
-            const filePath = isAbs(row.publishedPath)
-                ? row.publishedPath
-                : resolvePathFn(root, row.publishedPath);
-            const blobSha = await getBlobSha(row.ownerId, row.blobName, row.lastBlobSha);
-            let fileSha = null;
-            let exists = false;
-            try {
-                await stat(filePath);
-                exists = true;
-            }
-            catch {
-                /* missing */
-            }
-            let drift;
-            if (exists) {
-                try {
-                    const data = await readFile(filePath);
-                    fileSha = createHash('sha256').update(data).digest('hex');
-                    drift = fileSha === blobSha ? 'in-sync' : 'modified';
-                }
-                catch {
-                    drift = 'deleted';
-                }
-            }
-            else {
-                drift = 'deleted';
-            }
-            items.push({
-                ownerId: row.ownerId,
-                blobName: row.blobName,
-                publishedPath: row.publishedPath,
-                blobSha,
-                fileSha,
-                drift,
-            });
-        }
-        return {
-            items,
-            allInSync: items.every((i) => i.drift === 'in-sync'),
-        };
+    async status(projectRootOverride, checkoutRoot) {
+        const { statusDocs } = await import('./docs-ops.js');
+        return statusDocs({
+            projectRoot: projectRootOverride ?? this.projectRoot,
+            ...(checkoutRoot !== undefined ? { checkoutRoot } : {}),
+        });
     }
     // -----------------------------------------------------------------------
     // Private: resolution helpers

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package/dist/docs/doctor.d.ts

@@ -152,6 +152,19 @@ export interface DocsDoctorDiagnostic {
     /** True when `count` exceeded the detail cap. */
     readonly truncated: boolean;
 }
+/**
+ * The diagnostic classes that carry a repair, accepted by
+ * {@link DocsDoctorOptions.only} to scope a run to some of them (T14174).
+ *
+ * @task T14174
+ */
+export declare const DOCS_DOCTOR_REPAIR_CLASSES: readonly ["dangling-pointers", "doc-version-skew", "empty-provenance", "wikilinks-drift", "legacy-blob-coverage", "conduit-history-gaps", "publication-ledger-drift"];
+/**
+ * A diagnostic class that carries a repair.
+ *
+ * @task T14174
+ */
+export type DocsDoctorRepairClass = (typeof DOCS_DOCTOR_REPAIR_CLASSES)[number];
 /**
  * One planned or executed repair step.
  *
@@ -187,6 +200,16 @@ export interface DocsDoctorReport {
     readonly diagnostics: readonly DocsDoctorDiagnostic[];
     /** Repair plan (dry run) or executed repairs (apply). */
     readonly repairs: readonly DocsDoctorRepairAction[];
+    /**
+     * Repairs per class: `planned` lists every repair entry of the class,
+     * `applied` the ones written (0 on a dry run) (T14174).
+     */
+    readonly repairCounts: Readonly<Partial<Record<DocsDoctorRepairClass, {
+        readonly planned: number;
+        readonly applied: number;
+    }>>>;
+    /** The classes this run was scoped to, or null for every class (T14174). */
+    readonly only: readonly DocsDoctorRepairClass[] | null;
     /** One-line human summary. */
     readonly summary: string;
 }
@@ -210,12 +233,28 @@ export interface DocsDoctorOptions {
     readonly repair?: boolean;
     /** Age threshold (days) for the `stale-drafts` diagnostic. Default 30. */
     readonly olderThanDays?: number;
+    /**
+     * Scope the run to these repair classes ({@link DOCS_DOCTOR_REPAIR_CLASSES})
+     * (T14174): only their repairs are planned and, under {@link apply},
+     * written; every other class is left untouched. Diagnostics still report
+     * every class. An unknown name is refused with `E_DOCS_DOCTOR_UNKNOWN_CLASS`.
+     * The wikilinks rebuild also runs for `empty-provenance`, since a provenance
+     * backfill changes the derived edges. Cannot be combined with {@link repair}.
+     */
+    readonly only?: readonly string[];
     /**
      * Path to a backup artifact created within the last
      * {@link DOCS_DOCTOR_BACKUP_MAX_AGE_MS} milliseconds (checked via mtime).
      * Required when {@link apply} is true.
      */
     readonly backupReceiptPath?: string;
+    /**
+     * Where the published mirrors are read and git is asked (T14188): the
+     * invoking checkout, so a run from a CLEO worktree compares the store
+     * against that worktree's docs/. The store, ledger and backups stay at the
+     * project root. Default: the project root.
+     */
+    readonly checkoutRoot?: string;
 }
 /**
  * Discriminated outcome of {@link runDocsDoctor}.

package/dist/docs/doctor.d.ts.map

@@ -1 +1 @@
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package/dist/docs/doctor.js

@@ -115,6 +115,7 @@ import { docsAttachments } from '../store/tasks-schema.js';
 import { applyConduitHistoryBackfill, planConduitHistoryBackfill, } from './conduit-history-backfill.js';
 import { deriveDocLinks, isScannableTextMime, linksJsonOrNull, } from './derive-links.js';
 import { DOCS_VERSIONING_AUDIT_FILE } from './docs-update.js';
+import { assertCheckoutOfProject } from './modernize/guard.js';
 import { deleteDocsPublication, readDocsPublications } from './publications-store.js';
 import { deriveWikilinkEdges, rebuildDocsWikilinks } from './wikilinks.js';
 /**
@@ -147,6 +148,25 @@ export const DOCS_DOCTOR_MAX_DETAIL_ITEMS = 50;
  * @task T14117
  */
 export const DOCS_DOCTOR_LEDGER_PRUNE_AUDIT_FILE = '.cleo/audit/docs-publications-prune.jsonl';
+/**
+ * The diagnostic classes that carry a repair, accepted by
+ * {@link DocsDoctorOptions.only} to scope a run to some of them (T14174).
+ *
+ * @task T14174
+ */
+export const DOCS_DOCTOR_REPAIR_CLASSES = [
+    'dangling-pointers',
+    'doc-version-skew',
+    'empty-provenance',
+    'wikilinks-drift',
+    'legacy-blob-coverage',
+    'conduit-history-gaps',
+    'publication-ledger-drift',
+];
+/** Whether a diagnostic kind carries a repair (T14174). @internal */
+function isRepairClass(kind) {
+    return DOCS_DOCTOR_REPAIR_CLASSES.includes(kind);
+}
 /**
  * Parse a row's `attachment_json` defensively. Malformed JSON yields null —
  * such rows are skipped by kind-scoped checks rather than failing the run.
@@ -435,12 +455,12 @@ function provePublicationGone(projectRoot, publishedPath, absPath) {
  *
  * @internal
  */
-async function scanPublicationLedger(projectRoot, rows) {
+async function scanPublicationLedger(projectRoot, rows, checkoutRoot) {
     const ledger = await readDocsPublications(projectRoot);
     if (ledger.length === 0)
         return [];
-    const { statusDocs } = await import('./docs-ops.js');
-    const status = await statusDocs({ projectRoot });
+    const { resolvePublishedMirror, statusDocs } = await import('./docs-ops.js');
+    const status = await statusDocs({ projectRoot, checkoutRoot });
     const key = (r) => `${r.ownerId}\u0000${r.blobName}\u0000${r.publishedPath}`;
     const recordByKey = new Map(ledger.map((r) => [key(r), r]));
     const attachmentShas = new Set(rows.map((r) => r.sha256));
@@ -459,10 +479,8 @@ async function scanPublicationLedger(projectRoot, rows) {
         const record = recordByKey.get(key(item));
         if (!record)
             continue;
-        const absPath = isAbsolute(record.publishedPath)
-            ? record.publishedPath
-            : resolve(projectRoot, record.publishedPath);
-        const rel = relative(projectRoot, absPath);
+        const absPath = resolvePublishedMirror(projectRoot, checkoutRoot, record.publishedPath);
+        const rel = relative(checkoutRoot, absPath);
         const outsideRoot = rel.startsWith('..') || isAbsolute(rel);
         if (item.drift === 'modified') {
             const storeMoved = item.fileSha === record.lastBlobSha;
@@ -480,7 +498,7 @@ async function scanPublicationLedger(projectRoot, rows) {
         }
         const shas = new Set([record.lastBlobSha, item.blobSha]);
         const protectedElsewhere = [...shas].every((sha) => attachmentShas.has(sha) || (liveLedgerShas.get(sha) ?? 0) > 0);
-        const proof = provePublicationGone(projectRoot, record.publishedPath, absPath);
+        const proof = provePublicationGone(checkoutRoot, record.publishedPath, absPath);
         const blob = record.lastBlobSha.slice(0, 12);
         let action;
         let detail;
@@ -516,7 +534,7 @@ async function scanPublicationLedger(projectRoot, rows) {
  *
  * @internal
  */
-async function scanStore(projectRoot, db, olderThanDays) {
+async function scanStore(projectRoot, db, olderThanDays, checkoutRoot) {
     const rows = await db.select().from(docsAttachments).all();
     const payloadById = new Map();
     for (const row of rows)
@@ -721,7 +739,7 @@ async function scanStore(projectRoot, db, olderThanDays) {
     // planner reads the audit file, the registry and (hash-verified) bytes,
     // and writes nothing.
     const conduitBackfill = await planConduitHistoryBackfill(projectRoot);
-    const ledger = await scanPublicationLedger(projectRoot, rows);
+    const ledger = await scanPublicationLedger(projectRoot, rows, checkoutRoot);
     const ledgerItems = ledger.slice(0, DOCS_DOCTOR_MAX_DETAIL_ITEMS).map((f) => ({
         ownerId: f.record.ownerId,
         blobName: f.record.blobName,
@@ -866,18 +884,63 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
             },
         };
     }
+    // T14174 — scope to some repair classes.
+    let only = null;
+    if (opts.only !== undefined) {
+        const valid = new Set(DOCS_DOCTOR_REPAIR_CLASSES);
+        const unknown = opts.only.filter((c) => !valid.has(c));
+        if (unknown.length > 0 || opts.only.length === 0) {
+            return {
+                ok: false,
+                error: {
+                    // @sync-invariant none:input-shape an argument refusal before any repair write; nothing was written
+                    code: 'E_DOCS_DOCTOR_UNKNOWN_CLASS',
+                    message: `docs doctor: --only ${unknown.length > 0 ? `names unknown class(es) ${unknown.join(', ')}` : 'names no class'}; ` +
+                        `valid classes: ${DOCS_DOCTOR_REPAIR_CLASSES.join(', ')}`,
+                },
+            };
+        }
+        if (repair) {
+            return {
+                ok: false,
+                error: {
+                    // @sync-invariant none:input-shape a flag-combination refusal before any repair write; nothing was written
+                    code: 'E_DOCS_DOCTOR_FLAG_CONFLICT',
+                    message: 'docs doctor: --only and --repair cannot be combined — --repair is already scoped to ' +
+                        'the legacy-blob backfill; use `--apply --only legacy-blob-coverage` instead.',
+                },
+            };
+        }
+        only = [...new Set(opts.only)].filter((c) => valid.has(c));
+    }
+    const inScope = (kind) => only === null || only.includes(kind);
+    const rebuildWikilinks = inScope('wikilinks-drift') || inScope('empty-provenance');
     if (mutate) {
         const refusal = checkBackupReceipt(opts.backupReceiptPath);
         if (refusal)
             return { ok: false, error: refusal };
     }
     const db = await getDb(projectRoot);
-    const pre = await scanStore(projectRoot, db, olderThanDays);
+    const checkoutRoot = opts.checkoutRoot ?? projectRoot;
+    try {
+        assertCheckoutOfProject(projectRoot, checkoutRoot);
+    }
+    catch (err) {
+        return {
+            ok: false,
+            error: {
+                // @sync-invariant none:input-shape a checkout of another repository is refused before any read or repair write
+                code: 'E_DOCS_DOCTOR_FOREIGN_CHECKOUT',
+                message: err instanceof Error ? err.message : String(err),
+            },
+        };
+    }
+    const pre = await scanStore(projectRoot, db, olderThanDays, checkoutRoot);
     const repairs = [];
     // T13653: in repair mode ONLY the blob backfill runs — apply mode plans it
     // alongside the other repairs.
     if (!repair) {
-        for (const { row, path } of pre.dangling.archivable) {
+        for (const { row, path } of inScope('dangling-pointers') ? pre.dangling.archivable : []) {
             repairs.push({
                 kind: 'dangling-pointers',
                 action: 'archive-dangling',
@@ -887,7 +950,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
                 detail: `marked-dangling: local-file target missing (${path}) → lifecycle_status = 'archived'`,
             });
         }
-        for (const { row, path } of pre.dangling.clearable) {
+        for (const { row, path } of inScope('dangling-pointers') ? pre.dangling.clearable : []) {
             repairs.push({
                 kind: 'dangling-pointers',
                 action: 'clear-stale-path',
@@ -898,7 +961,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
                     `(sha256 ${row.sha256.slice(0, 12)}…)`,
             });
         }
-        for (const { row, expected } of pre.skewed) {
+        for (const { row, expected } of inScope('doc-version-skew') ? pre.skewed : []) {
             repairs.push({
                 kind: 'doc-version-skew',
                 action: 'set-doc-version',
@@ -908,7 +971,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
                 detail: `audit-note: docVersion ${row.docVersion} → ${expected} (audit log revisions + 1)`,
             });
         }
-        for (const { row, derived } of pre.backfillable) {
+        for (const { row, derived } of inScope('empty-provenance') ? pre.backfillable : []) {
             const derivedCount = derived.topics.length + derived.relatedTasks.length;
             repairs.push({
                 kind: 'empty-provenance',
@@ -921,7 +984,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
                     : 'no derivable topics or task mentions — columns stay NULL',
             });
         }
-        if (pre.needsWikilinksRebuild) {
+        if (pre.needsWikilinksRebuild && rebuildWikilinks) {
             repairs.push({
                 kind: 'wikilinks-drift',
                 action: 'rebuild-wikilinks',
@@ -935,7 +998,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
         // dry-run/apply mode; executed only under --apply (the --repair mode
         // stays the T13653 blob-backfill-only fast path). A complete doc with
         // unrecoverable gaps still gets an entry so the gap stays explained.
-        for (const plan of pre.conduitBackfill) {
+        for (const plan of inScope('conduit-history-gaps') ? pre.conduitBackfill : []) {
             if (plan.complete && plan.gaps.length === 0)
                 continue;
             if (plan.conflict) {
@@ -975,7 +1038,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
         }
         // T14117 — publication-ledger drift: prune protected deleted rows; every
         // other finding is a plan-only proposal.
-        for (const finding of pre.ledger) {
+        for (const finding of inScope('publication-ledger-drift') ? pre.ledger : []) {
             repairs.push({
                 kind: 'publication-ledger-drift',
                 action: finding.action,
@@ -984,7 +1047,8 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
             });
         }
     }
-    for (const candidate of pre.blobBackfillable) {
+    const blobBackfillable = inScope('legacy-blob-coverage') ? pre.blobBackfillable : [];
+    for (const candidate of blobBackfillable) {
         repairs.push({
             kind: 'legacy-blob-coverage',
             action: 'backfill-blob-bytes',
@@ -1006,7 +1070,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
             .map((r, i) => ({ r, i }))
             .filter(({ r }) => r.kind === 'legacy-blob-coverage' && r.action === 'backfill-blob-bytes')
             .map(({ i }) => i);
-        for (const [n, candidate] of pre.blobBackfillable.entries()) {
+        for (const [n, candidate] of blobBackfillable.entries()) {
             if (candidate.sourcePath === null)
                 continue;
             const outcome = await backfillBlobStoreBytes(cleoDir, candidate.sha256, candidate.sourcePath);
@@ -1030,7 +1094,7 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
             // backfill above so the bytes the new rows address are mirrored first;
             // annotate each repair entry with its executed outcome (zip by slug).
             const conduitBySlug = new Map();
-            for (const plan of pre.conduitBackfill) {
+            for (const plan of inScope('conduit-history-gaps') ? pre.conduitBackfill : []) {
                 if (plan.toBackfill.length === 0 || plan.conflict)
                     continue;
                 const result = await applyConduitHistoryBackfill(projectRoot, plan);
@@ -1047,14 +1111,14 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
                     detail: `${repair.detail} → executed: ${outcome.inserted} row(s) inserted, ${outcome.gaps} gap(s)`,
                 };
             }
-            for (const { row, expected } of pre.skewed) {
+            for (const { row, expected } of inScope('doc-version-skew') ? pre.skewed : []) {
                 await db
                     .update(docsAttachments)
                     .set({ docVersion: expected })
                     .where(eq(docsAttachments.id, row.id))
                     .run();
             }
-            for (const { row, derived } of pre.backfillable) {
+            for (const { row, derived } of inScope('empty-provenance') ? pre.backfillable : []) {
                 if (derived.topics.length + derived.relatedTasks.length === 0)
                     continue;
                 await db
@@ -1066,14 +1130,14 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
                     .where(eq(docsAttachments.id, row.id))
                     .run();
             }
-            for (const { row } of pre.dangling.archivable) {
+            for (const { row } of inScope('dangling-pointers') ? pre.dangling.archivable : []) {
                 await db
                     .update(docsAttachments)
                     .set({ lifecycleStatus: 'archived' })
                     .where(eq(docsAttachments.id, row.id))
                     .run();
             }
-            for (const { row, payload } of pre.dangling.clearable) {
+            for (const { row, payload } of inScope('dangling-pointers') ? pre.dangling.clearable : []) {
                 const cleaned = { ...payload };
                 delete cleaned['path'];
                 await db
@@ -1082,10 +1146,12 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
                     .where(eq(docsAttachments.id, row.id))
                     .run();
             }
-            if (pre.needsWikilinksRebuild) {
+            if (pre.needsWikilinksRebuild && rebuildWikilinks) {
                 await rebuildDocsWikilinks({ projectRoot });
             }
-            const prunable = pre.ledger.filter((f) => f.prunable);
+            const prunable = inScope('publication-ledger-drift')
+                ? pre.ledger.filter((f) => f.prunable)
+                : [];
             if (prunable.length > 0) {
                 const auditPath = join(projectRoot, DOCS_DOCTOR_LEDGER_PRUNE_AUDIT_FILE);
                 mkdirSync(dirname(auditPath), { recursive: true });
@@ -1101,24 +1167,36 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
     // T13560: on a mutating run, re-scan so the envelope's diagnostics (and the
     // summary computed from them) describe POST-repair state, consistent with
     // a follow-up dry run. Dry runs keep the pre-repair scan.
-    const post = mutate ? await scanStore(projectRoot, db, olderThanDays) : pre;
+    const post = mutate ? await scanStore(projectRoot, db, olderThanDays, checkoutRoot) : pre;
     const findings = post.diagnostics.reduce((sum, d) => sum + d.count, 0);
     // T13727 — surface the conduit backfill counts in the one-line summary so
     // operators see backfilled/skipped/gap per run without reading the report.
     const conduitActionable = pre.conduitBackfill.filter((p) => !p.complete || p.gaps.length > 0 || p.conflict);
     const conduitGapTotal = conduitActionable.reduce((s, p) => s + p.gaps.length, 0);
     const conduitConflictTotal = conduitActionable.filter((p) => p.conflict).length;
-    const conduitBackfillNote = repair || conduitActionable.length === 0
+    const conduitBackfillNote = repair || !inScope('conduit-history-gaps') || conduitActionable.length === 0
         ? ''
         : apply
             ? `; conduit history: ${conduitActionable.reduce((s, p) => s + p.toBackfill.length, 0)} version(s) backfilled across ${conduitActionable.length} doc(s) (${conduitGapTotal} gap(s) unrecoverable, ${conduitConflictTotal} conflict(s))`
             : `; conduit history: ${conduitActionable.length} doc(s) need attention (${conduitActionable.reduce((s, p) => s + p.toBackfill.length, 0)} version(s) to backfill, ${conduitGapTotal} gap(s) unrecoverable, ${conduitConflictTotal} conflict(s))`;
+    const repairCounts = {};
+    for (const r of repairs) {
+        const kind = r.kind;
+        if (!isRepairClass(kind))
+            continue;
+        const entry = repairCounts[kind] ?? { planned: 0, applied: 0 };
+        entry.planned += 1;
+        if (r.applied)
+            entry.applied += 1;
+        repairCounts[kind] = entry;
+    }
+    const scopeNote = only === null ? '' : ` (only: ${only.join(', ')})`;
     const summary = repair
         ? `docs doctor repaired ${repairs.filter((r) => r.applied).length} blob backfill(s); ` +
             `${post.diagnostics.find((d) => d.kind === 'legacy-blob-coverage')?.count ?? 0} sha(s) still missing post-repair`
         : apply
-            ? `docs doctor applied ${repairs.filter((r) => r.applied).length} repair(s); ${findings} finding(s) remain post-repair${conduitBackfillNote}`
-            : `docs doctor found ${findings} finding(s); ${repairs.length} repair(s) planned (dry-run — pass --apply to execute)${conduitBackfillNote}`;
+            ? `docs doctor applied ${repairs.filter((r) => r.applied).length} repair(s)${scopeNote}; ${findings} finding(s) remain post-repair${conduitBackfillNote}`
+            : `docs doctor found ${findings} finding(s); ${repairs.length} repair(s) planned${scopeNote} (dry-run — pass --apply to execute)${conduitBackfillNote}`;
     return {
         ok: true,
         report: {
@@ -1127,6 +1205,8 @@ export async function runDocsDoctor(projectRoot, opts = {}) {
             backupReceiptPath: mutate ? (opts.backupReceiptPath ?? null) : null,
             diagnostics: post.diagnostics,
             repairs,
+            repairCounts,
+            only,
             summary,
         },
     };