@cleocode/core 2026.10.9 → 2026.10.10-canary.2

package/dist/tasks/test-run-binding.js

@@ -16,7 +16,10 @@
  *     - the newest working-tree modification of any path the branch changed
  *       against origin's default branch (committed, uncommitted or untracked;
  *       the report itself excluded) — or, with no origin to diff against, any
- *       uncommitted tracked edit;
+ *       uncommitted tracked edit — except a path that a checkout or merge
+ *       after the run rewrote with identical bytes (HEAD moved and the file
+ *       equals its blob at both HEADs; T13567, T13569). A bare touch still
+ *       stales: without a run-time fingerprint it looks like a revert;
  *     - for each uncommitted deletion (a rename's old path included, since a
  *       move keeps the file's own mtime), the modification time of the
  *       nearest existing directory it was removed from.
@@ -196,6 +199,39 @@ function newestModified(root, paths) {
     }
     return newest;
 }
+/**
+ * The most recently modified of `paths` modified after the run, leaving out a
+ * path that a checkout or merge after the run rewrote with the same bytes
+ * (T13567, narrowed by T13569).
+ *
+ * A path is left out only when all hold: HEAD moved after the run (HEAD as of
+ * the run, {@link headAtRun}, is not HEAD now), and the file's current blob
+ * (`git hash-object`) equals its blob both at HEAD now and at HEAD as of the
+ * run — the move rewrote it without changing it. Nothing else is exempt: a
+ * bare `touch`, or a file that was dirty during the run and reverted to HEAD
+ * afterwards, cannot be told apart without a run-time content fingerprint, and
+ * a false pass is worse than a needless re-run, so its newer mtime still
+ * stales the report. When the reflog does not reach the run, every mtime after
+ * it counts.
+ */
+function modifiedAfterRun(root, paths, clock) {
+    const after = paths
+        .map((path) => ({ path, at: mtimeOf(resolve(root, path)) }))
+        .filter((p) => p.at !== null && clock.after(p.at))
+        .sort((a, b) => b.at - a.at);
+    if (after.length === 0)
+        return null;
+    const blob = (args) => git(root, args)?.trim() || null;
+    const atRun = headAtRun(root, clock.after);
+    const head = blob(['rev-parse', 'HEAD']);
+    if (atRun === null || head === null || head === atRun)
+        return after[0] ?? null;
+    return (after.find((p) => {
+        const now = blob(['hash-object', '--', p.path]);
+        const at = (commit) => blob(['rev-parse', '--verify', '--quiet', `${commit}:./${p.path}`]);
+        return now === null || now !== at(head) || now !== at(atRun);
+    }) ?? null);
+}
 /**
  * When each deletion against `base` (HEAD: the uncommitted ones) happened, as
  * far as the filesystem says: the mtime of the nearest existing directory it
@@ -337,7 +373,7 @@ export function reportFreshness(startTime, reportPath, root, atom) {
         }
     }
     const changes = scopedChangedPaths(root);
-    const newest = newestModified(root, (changes?.paths ?? dirtyTracked(root)).filter((p) => p !== clock.reportRel));
+    const newest = modifiedAfterRun(root, (changes?.paths ?? dirtyTracked(root)).filter((p) => p !== clock.reportRel), clock);
     if (newest !== null && clock.after(newest.at)) {
         return stale(staleRefusal(ranAt, `${newest.path} was modified`, newest.at, rerun));
     }

package/dist/tasks/test-run-binding.js.map

@@ -1 +1 @@
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package/dist/worktree/worktree-adopt.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"worktree-adopt.d.ts","sourceRoot":"","sources":["../../src/worktree/worktree-adopt.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoCG;AAIH,OAAO,KAAK,EACV,iBAAiB,EACjB,mBAAmB,EACnB,YAAY,EAEb,MAAM,qBAAqB,CAAC;AAU7B,YAAY,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,CAAC;AAEvD;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AACH,wBAAsB,aAAa,CACjC,IAAI,EAAE,iBAAiB,GACtB,OAAO,CAAC,YAAY,CAAC,mBAAmB,CAAC,CAAC,CAwE5C;AAMD,2DAA2D;AAC3D,UAAU,aAAa;IACrB,OAAO,EAAE,IAAI,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,2DAA2D;AAC3D,UAAU,aAAa;IACrB,OAAO,EAAE,KAAK,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,yBAAyB,CAAC,YAAY,EAAE,MAAM,GAAG,aAAa,GAAG,aAAa,CAkD7F;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAG9D"}
+{"version":3,"file":"worktree-adopt.d.ts","sourceRoot":"","sources":["../../src/worktree/worktree-adopt.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAoCG;AAIH,OAAO,KAAK,EACV,iBAAiB,EACjB,mBAAmB,EACnB,YAAY,EAEb,MAAM,qBAAqB,CAAC;AAU7B,YAAY,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,CAAC;AAEvD;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AACH,wBAAsB,aAAa,CACjC,IAAI,EAAE,iBAAiB,GACtB,OAAO,CAAC,YAAY,CAAC,mBAAmB,CAAC,CAAC,CAiF5C;AA6CD,2DAA2D;AAC3D,UAAU,aAAa;IACrB,OAAO,EAAE,IAAI,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;CAChB;AAED,2DAA2D;AAC3D,UAAU,aAAa;IACrB,OAAO,EAAE,KAAK,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,yBAAyB,CAAC,YAAY,EAAE,MAAM,GAAG,aAAa,GAAG,aAAa,CAkD7F;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAG9D"}

package/dist/worktree/worktree-adopt.js

@@ -35,7 +35,7 @@
  * @adr ADR-055 — worktree canonical paths
  * @adr ADR-062 — git merge --no-ff integration semantics
  */
-import { existsSync, readFileSync } from 'node:fs';
+import { copyFileSync, existsSync, mkdirSync, readFileSync } from 'node:fs';
 import { join, resolve } from 'node:path';
 import { engineError, engineSuccess } from '@cleocode/contracts/engine-result.js';
 import { getLogger } from '../logger.js';
@@ -92,6 +92,13 @@ export async function adoptWorktree(opts) {
         });
     }
     const branch = branchResult.branch;
+    // --- Seed and verify project-info.json (T13568 · T11035) ---
+    const seeded = seedProjectInfo(projectRoot, worktreePath);
+    if (typeof seeded !== 'string')
+        // @sync-invariant none:local-only adopting refuses a worktree whose local project-info names another project; nothing is written
+        return engineError('E_WORKTREE_IDENTITY_MISMATCH', seeded.mismatch, {
+            fix: 'Adopt the worktree from the project that owns it, or remove its stale .cleo/project-info.json.',
+        });
     // --- Resolve task ID ---
     const taskId = opts.taskId !== undefined ? opts.taskId : taskIdFromBranch(branch);
     // --- Upsert sentinel index ---
@@ -123,8 +130,45 @@ export async function adoptWorktree(opts) {
         source,
         isNew,
         adoptedAt,
+        projectInfo: seeded,
     });
 }
+/** A `projectId` field of a project-info file, or `''` when absent or unreadable. */
+function projectIdOf(infoPath) {
+    try {
+        const data = JSON.parse(readFileSync(infoPath, 'utf-8'));
+        return typeof data.projectId === 'string' ? data.projectId : '';
+    }
+    catch {
+        return '';
+    }
+}
+/**
+ * Give an adopted worktree the adopting project's `.cleo/project-info.json`
+ * (T13568), as `createWorktree` does at provision time (T11033), and verify the
+ * projectId matches (T11035). An existing file is kept when its projectId
+ * matches and refused when it names another project.
+ *
+ * @returns The outcome, or the mismatch to refuse with.
+ */
+function seedProjectInfo(projectRoot, worktreePath) {
+    const parentInfo = join(projectRoot, '.cleo', 'project-info.json');
+    if (!existsSync(parentInfo))
+        return 'skipped';
+    const parentId = projectIdOf(parentInfo);
+    const worktreeInfo = join(worktreePath, '.cleo', 'project-info.json');
+    const outcome = existsSync(worktreeInfo) ? 'present' : 'seeded';
+    if (outcome === 'seeded') {
+        mkdirSync(join(worktreePath, '.cleo'), { recursive: true });
+        copyFileSync(parentInfo, worktreeInfo);
+    }
+    const worktreeId = projectIdOf(worktreeInfo);
+    if (worktreeId !== parentId)
+        return {
+            mismatch: `Worktree ${worktreePath} has projectId ${worktreeId || '(none)'} in .cleo/project-info.json, but the adopting project is ${parentId || '(none)'}`,
+        };
+    return outcome;
+}
 /**
  * Read the branch name from a worktree directory.
  *

package/dist/worktree/worktree-adopt.js.map

@@ -1 +1 @@
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package/migrations/drizzle-cleo-project/20261011000000_t13354-conduit-history-rekey/migration.sql

@@ -0,0 +1,274 @@
+-- T13354 (saga T13339, epic T13340) — CleoDocs schema re-key: the conduit
+-- history tables key on the immutable doc row uid, not the mutable slug.
+--
+-- Spec: `cleo docs fetch cleodocs-rearch-design` §3 + §10 (team-sync verdict,
+-- T13365, incorporated); decision D11165.
+--
+-- What this file does:
+--
+--   1. `conduit_attachments` gains the Stage C row identity columns (`uid`,
+--      `birth_fp`) and a unique index on `uid` — ADD COLUMN only, no rebuild:
+--      the doc row is the FK parent of the whole history family, so nothing
+--      here touches its keys. Existing rows keep NULL until the open pass
+--      fills them deterministically (store/row-identity.ts, the T12341
+--      pattern); rows inserted by this build get theirs from the
+--      per-connection TEMP trigger and `defaultRowUid`.
+--
+--   2. `conduit_attachment_versions` is rebuilt (canonical recipe: create
+--      `__new_…`, INSERT … SELECT, DROP, RENAME — the T11649 pattern):
+--      - the `slug` FK (ON DELETE CASCADE) is gone; `slug` survives as a
+--        nullable display/legacy column (no key, no FK) so the
+--        signaldock→conduit column-intersection copy still carries it;
+--      - `attachment_uid` REFERENCES `conduit_attachments(uid)` with NO
+--        cascade — history survives the parent. `parent_version_uid` is a
+--        SOFT self-reference (indexed, accessor-enforced): the rebuild idiom
+--        cannot carry a self-FK — at the INSERT the old table still occupies
+--        the name, so its `uid` is not yet a unique parent key ("foreign key
+--        mismatch" when legacy rows exist);
+--      - the UNIQUE(slug, version_number) constraint is dropped:
+--        `version_number` is a locally minted display ordinal that collides
+--        across devices, never a key (identity = uid + parent_version_uid
+--        DAG);
+--      - the table gains `uid` / `birth_fp` (NULL until the open fill).
+--      The INSERT … SELECT carries every legacy row verbatim (new columns
+--      NULL); it calls no non-deterministic function.
+--
+--   3. `conduit_attachment_approvals` is rebuilt the same way: keyed by
+--      `version_uid` (+ nullable `section_id`); the UNIQUE(slug, reviewer)
+--      constraint is dropped because approvals are append-only now — a
+--      revoke is a new row (tombstone), never an UPDATE/DELETE. `updated_at`
+--      is carried for legacy rows; new rows leave it equal to `created_at`.
+--      `version_uid` stays NULL on legacy rows (the old key was the display
+--      ordinal, which cannot be resolved to a uid inside SQL).
+--
+--   4. `conduit_attachment_contributors` is rebuilt keyed
+--      (attachment_uid, agent_id) with the slug carried as a nullable legacy
+--      column. The table is DERIVED (rebuilt from versions after apply) and
+--      NOT synced (spec §10), so it gets no uid columns.
+--
+--   5. New tables: `conduit_doc_slug_aliases` (old slug → doc uid lookup,
+--      natural identity over (slug, doc_uid), uid is the primary key),
+--      `conduit_doc_heads` (current-version projection per doc: references
+--      `head_version_uid`, merge rule docs.head.max-hlc, conflicts recorded
+--      on losing concurrent heads) and `section_crdt_states` (LOCAL-ONLY
+--      Loro snapshot per doc section — deliberately no FK into a syncing
+--      table, T12778; an apply that lands a version resets/rebases this
+--      state instead of cascading).
+--
+-- Foreign keys are OFF for the rebuild window (the recipe requires it). No
+-- statement deletes from or re-keys an FK parent (gate 36 rule 6), no DML
+-- calls a non-deterministic function (gate 36 rule 5 — the `datetime('now')`
+-- occurrences below are DDL column defaults, which are exempt), and no
+-- trigger is created here (the owned-trigger clause rule does not apply).
+--
+-- @task T13354
+-- @epic T13340
+-- @saga T13339
+
+PRAGMA foreign_keys = OFF;
+--> statement-breakpoint
+
+-- --------------------------------------------------------------------------
+-- Step 1 — conduit_attachments: row identity columns (ADD COLUMN, no rebuild)
+-- --------------------------------------------------------------------------
+ALTER TABLE `conduit_attachments` ADD COLUMN `uid` text;
+--> statement-breakpoint
+ALTER TABLE `conduit_attachments` ADD COLUMN `birth_fp` text;
+--> statement-breakpoint
+CREATE UNIQUE INDEX IF NOT EXISTS `uq_conduit_attachments_uid` ON `conduit_attachments` (`uid`);
+--> statement-breakpoint
+
+-- --------------------------------------------------------------------------
+-- Step 2 — rebuild conduit_attachment_versions (re-keyed to the doc uid)
+-- --------------------------------------------------------------------------
+DROP INDEX IF EXISTS `idx_conduit_attachment_versions_slug`;
+--> statement-breakpoint
+DROP INDEX IF EXISTS `idx_conduit_attachment_versions_author`;
+--> statement-breakpoint
+CREATE TABLE `__new_conduit_attachment_versions` (
+	`id` text PRIMARY KEY,
+	`uid` text,
+	`birth_fp` text,
+	`attachment_uid` text,
+	`parent_version_uid` text,
+	`slug` text,
+	`version_number` integer NOT NULL,
+	`author_agent_id` text NOT NULL,
+	`change_type` text DEFAULT 'patch' NOT NULL,
+	`patch_text` text,
+	`storage_key` text NOT NULL,
+	`content_hash` text NOT NULL,
+	`original_size` integer NOT NULL,
+	`compressed_size` integer NOT NULL,
+	`tokens` integer NOT NULL,
+	`change_summary` text,
+	`sections_modified` text DEFAULT '[]' NOT NULL,
+	`tokens_added` integer DEFAULT 0 NOT NULL,
+	`tokens_removed` integer DEFAULT 0 NOT NULL,
+	`created_at` text DEFAULT (datetime('now')) NOT NULL,
+	CONSTRAINT `fk_conduit_attachment_versions_attachment_uid` FOREIGN KEY (`attachment_uid`) REFERENCES `conduit_attachments`(`uid`) ON DELETE NO ACTION,
+	CHECK ("created_at" IS NULL OR "created_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*')
+);
+--> statement-breakpoint
+INSERT INTO `__new_conduit_attachment_versions` (
+	`id`, `slug`, `version_number`, `author_agent_id`, `change_type`,
+	`patch_text`, `storage_key`, `content_hash`, `original_size`,
+	`compressed_size`, `tokens`, `change_summary`, `sections_modified`,
+	`tokens_added`, `tokens_removed`, `created_at`
+)
+SELECT
+	`id`, `slug`, `version_number`, `author_agent_id`, `change_type`,
+	`patch_text`, `storage_key`, `content_hash`, `original_size`,
+	`compressed_size`, `tokens`, `change_summary`, `sections_modified`,
+	`tokens_added`, `tokens_removed`, `created_at`
+FROM `conduit_attachment_versions`;
+--> statement-breakpoint
+DROP TABLE `conduit_attachment_versions`;
+--> statement-breakpoint
+ALTER TABLE `__new_conduit_attachment_versions` RENAME TO `conduit_attachment_versions`;
+--> statement-breakpoint
+CREATE UNIQUE INDEX `uq_conduit_attachment_versions_uid` ON `conduit_attachment_versions` (`uid`);
+--> statement-breakpoint
+CREATE INDEX `idx_conduit_attachment_versions_attachment` ON `conduit_attachment_versions` (`attachment_uid`);
+--> statement-breakpoint
+CREATE INDEX `idx_conduit_attachment_versions_parent` ON `conduit_attachment_versions` (`parent_version_uid`);
+--> statement-breakpoint
+CREATE INDEX `idx_conduit_attachment_versions_author` ON `conduit_attachment_versions` (`author_agent_id`);
+--> statement-breakpoint
+-- Rebuilt tables must recreate EVERY index the consolidation migration
+-- created: its apply-probe looks for them on journal-rebuilt stores, and a
+-- missing one re-runs the consolidation. The slug index now covers a legacy
+-- display column, but it must exist.
+CREATE INDEX `idx_conduit_attachment_versions_slug` ON `conduit_attachment_versions` (`slug`);
+--> statement-breakpoint
+
+-- --------------------------------------------------------------------------
+-- Step 3 — rebuild conduit_attachment_approvals (version-uid keyed,
+--          append-only with tombstone revokes)
+-- --------------------------------------------------------------------------
+DROP INDEX IF EXISTS `idx_conduit_attachment_approvals_slug`;
+--> statement-breakpoint
+CREATE TABLE `__new_conduit_attachment_approvals` (
+	`id` text PRIMARY KEY,
+	`uid` text,
+	`birth_fp` text,
+	`attachment_uid` text,
+	`version_uid` text,
+	`section_id` text,
+	`slug` text,
+	`reviewer_agent_id` text NOT NULL,
+	`status` text DEFAULT 'pending' NOT NULL,
+	`comment` text,
+	`version_reviewed` integer NOT NULL,
+	`created_at` text DEFAULT (datetime('now')) NOT NULL,
+	`updated_at` text DEFAULT (datetime('now')) NOT NULL,
+	CONSTRAINT `fk_conduit_attachment_approvals_attachment_uid` FOREIGN KEY (`attachment_uid`) REFERENCES `conduit_attachments`(`uid`) ON DELETE NO ACTION,
+	CONSTRAINT `fk_conduit_attachment_approvals_version_uid` FOREIGN KEY (`version_uid`) REFERENCES `conduit_attachment_versions`(`uid`) ON DELETE NO ACTION,
+	CHECK ("created_at" IS NULL OR "created_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*'),
+	CHECK ("updated_at" IS NULL OR "updated_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*')
+);
+--> statement-breakpoint
+INSERT INTO `__new_conduit_attachment_approvals` (
+	`id`, `slug`, `reviewer_agent_id`, `status`, `comment`,
+	`version_reviewed`, `created_at`, `updated_at`
+)
+SELECT
+	`id`, `slug`, `reviewer_agent_id`, `status`, `comment`,
+	`version_reviewed`, `created_at`, `updated_at`
+FROM `conduit_attachment_approvals`;
+--> statement-breakpoint
+DROP TABLE `conduit_attachment_approvals`;
+--> statement-breakpoint
+ALTER TABLE `__new_conduit_attachment_approvals` RENAME TO `conduit_attachment_approvals`;
+--> statement-breakpoint
+CREATE UNIQUE INDEX `uq_conduit_attachment_approvals_uid` ON `conduit_attachment_approvals` (`uid`);
+--> statement-breakpoint
+CREATE INDEX `idx_conduit_attachment_approvals_attachment` ON `conduit_attachment_approvals` (`attachment_uid`);
+--> statement-breakpoint
+CREATE INDEX `idx_conduit_attachment_approvals_version` ON `conduit_attachment_approvals` (`version_uid`);
+--> statement-breakpoint
+CREATE INDEX `idx_conduit_attachment_approvals_slug` ON `conduit_attachment_approvals` (`slug`);
+--> statement-breakpoint
+
+-- --------------------------------------------------------------------------
+-- Step 4 — rebuild conduit_attachment_contributors (derived rollup keyed on
+--          the doc uid; NOT synced — rebuilt from versions after apply)
+-- --------------------------------------------------------------------------
+CREATE TABLE `__new_conduit_attachment_contributors` (
+	`attachment_uid` text,
+	`slug` text,
+	`agent_id` text NOT NULL,
+	`version_count` integer DEFAULT 0 NOT NULL,
+	`total_tokens_added` integer DEFAULT 0 NOT NULL,
+	`total_tokens_removed` integer DEFAULT 0 NOT NULL,
+	`first_contribution_at` text NOT NULL,
+	`last_contribution_at` text NOT NULL,
+	CONSTRAINT `conduit_attachment_contributors_pk` PRIMARY KEY(`attachment_uid`, `agent_id`),
+	CONSTRAINT `fk_conduit_attachment_contributors_attachment_uid` FOREIGN KEY (`attachment_uid`) REFERENCES `conduit_attachments`(`uid`) ON DELETE NO ACTION,
+	CHECK ("first_contribution_at" IS NULL OR "first_contribution_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*'),
+	CHECK ("last_contribution_at" IS NULL OR "last_contribution_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*')
+);
+--> statement-breakpoint
+INSERT INTO `__new_conduit_attachment_contributors` (
+	`slug`, `agent_id`, `version_count`, `total_tokens_added`,
+	`total_tokens_removed`, `first_contribution_at`, `last_contribution_at`
+)
+SELECT
+	`slug`, `agent_id`, `version_count`, `total_tokens_added`,
+	`total_tokens_removed`, `first_contribution_at`, `last_contribution_at`
+FROM `conduit_attachment_contributors`;
+--> statement-breakpoint
+DROP TABLE `conduit_attachment_contributors`;
+--> statement-breakpoint
+ALTER TABLE `__new_conduit_attachment_contributors` RENAME TO `conduit_attachment_contributors`;
+--> statement-breakpoint
+
+-- --------------------------------------------------------------------------
+-- Step 5 — new tables: slug aliases, head projection, local CRDT state
+-- --------------------------------------------------------------------------
+CREATE TABLE IF NOT EXISTS `conduit_doc_slug_aliases` (
+	`slug` text NOT NULL,
+	`doc_uid` text NOT NULL,
+	`reason` text DEFAULT 'rename' NOT NULL,
+	`created_at` text DEFAULT (datetime('now')) NOT NULL,
+	`uid` text,
+	CONSTRAINT `conduit_doc_slug_aliases_pk` PRIMARY KEY(`slug`, `doc_uid`),
+	CONSTRAINT `fk_conduit_doc_slug_aliases_doc_uid` FOREIGN KEY (`doc_uid`) REFERENCES `conduit_attachments`(`uid`) ON DELETE NO ACTION,
+	CHECK ("created_at" IS NULL OR "created_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*')
+);
+--> statement-breakpoint
+CREATE INDEX IF NOT EXISTS `idx_conduit_doc_slug_aliases_slug` ON `conduit_doc_slug_aliases` (`slug`);
+--> statement-breakpoint
+CREATE TABLE IF NOT EXISTS `conduit_doc_heads` (
+	`attachment_uid` text PRIMARY KEY,
+	`head_version_uid` text NOT NULL,
+	`head_hlc` text NOT NULL,
+	`conflict_count` integer DEFAULT 0 NOT NULL,
+	`last_conflict_json` text,
+	`updated_at` text DEFAULT (datetime('now')) NOT NULL,
+	`uid` text,
+	CONSTRAINT `fk_conduit_doc_heads_attachment_uid` FOREIGN KEY (`attachment_uid`) REFERENCES `conduit_attachments`(`uid`) ON DELETE NO ACTION,
+	CONSTRAINT `fk_conduit_doc_heads_head_version_uid` FOREIGN KEY (`head_version_uid`) REFERENCES `conduit_attachment_versions`(`uid`) ON DELETE NO ACTION,
+	CHECK ("updated_at" IS NULL OR "updated_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*')
+);
+--> statement-breakpoint
+CREATE TABLE IF NOT EXISTS `section_crdt_states` (
+	`attachment_uid` text NOT NULL,
+	`section_id` text NOT NULL,
+	`snapshot` blob NOT NULL,
+	`base_version_uid` text,
+	`updated_at` text DEFAULT (datetime('now')) NOT NULL,
+	CONSTRAINT `section_crdt_states_pk` PRIMARY KEY(`attachment_uid`, `section_id`),
+	CHECK ("updated_at" IS NULL OR "updated_at" GLOB '[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]*')
+);
+--> statement-breakpoint
+
+-- Note: the uid unique indexes on the two new tables are deliberately NOT
+-- created here. The open-time identity heal (store/row-identity.ts,
+-- ensureRowIdentitySchema) owns them: in the Gate B replay a pre-identity
+-- copy drops the uid columns, and a migration-time CREATE INDEX would run
+-- before the heal re-adds them ("no such column"). The heal creates
+-- `uq_<table>_uid` for every declared table at every open, on every store,
+-- so fresh and existing stores alike get the index.
+
+PRAGMA foreign_keys = ON;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cleocode/core",
-  "version": "2026.10.9",
+  "version": "2026.10.10-canary.2",
   "description": "CLEO core business logic kernel — tasks, sessions, memory, orchestration, lifecycle, with bundled SQLite store",
   "type": "module",
   "main": "./dist/index.js",
@@ -496,16 +496,16 @@
     "write-file-atomic": "^7.0.1",
     "yaml": "^2.8.3",
     "zod": "^4.3.6",
-    "@cleocode/adapters": "2026.10.9",
-    "@cleocode/agents": "2026.10.9",
-    "@cleocode/caamp": "2026.10.9",
-    "@cleocode/contracts": "2026.10.9",
-    "@cleocode/git-shim": "2026.10.9",
-    "@cleocode/lafs": "2026.10.9",
-    "@cleocode/nexus": "2026.10.9",
-    "@cleocode/paths": "2026.10.9",
-    "@cleocode/skills": "2026.10.9",
-    "@cleocode/worktree": "2026.10.9"
+    "@cleocode/adapters": "2026.10.10-canary.2",
+    "@cleocode/agents": "2026.10.10-canary.2",
+    "@cleocode/caamp": "2026.10.10-canary.2",
+    "@cleocode/contracts": "2026.10.10-canary.2",
+    "@cleocode/git-shim": "2026.10.10-canary.2",
+    "@cleocode/lafs": "2026.10.10-canary.2",
+    "@cleocode/nexus": "2026.10.10-canary.2",
+    "@cleocode/paths": "2026.10.10-canary.2",
+    "@cleocode/skills": "2026.10.10-canary.2",
+    "@cleocode/worktree": "2026.10.10-canary.2"
   },
   "engines": {
     "node": ">=24.16.0"
@@ -531,7 +531,7 @@
     "@types/proper-lockfile": "^4.1.4",
     "@types/tar": "^6.1.13",
     "@types/write-file-atomic": "^4.0.3",
-    "@cleocode/utils": "2026.10.9"
+    "@cleocode/utils": "2026.10.10-canary.2"
   },
   "repository": {
     "type": "git",
@@ -540,7 +540,7 @@
   },
   "optionalDependencies": {
     "llmtxt": "^2026.5.15",
-    "@cleocode/studio": "^2026.10.9"
+    "@cleocode/studio": "^2026.10.10-canary.2"
   },
   "scripts": {
     "build": "tsc && node scripts/copy-selfimprove-fixtures.mjs && node scripts/write-build-provenance.mjs",

package/schemas/project-info.schema.json

@@ -79,8 +79,8 @@
     },
     "cleoVersion": {
       "type": "string",
-      "pattern": "^\\d+\\.\\d+\\.\\d+$",
-      "description": "CLEO version that last modified this file (semver)."
+      "pattern": "^\\d+\\.\\d+\\.\\d+(-[0-9A-Za-z.-]+)?(\\+[0-9A-Za-z.-]+)?$",
+      "description": "CLEO version that last modified this file (semver, including a prerelease such as -canary.1)."
     },
     "createdAt": {
       "type": "string",

package/templates/git-hooks/commit-msg

@@ -54,6 +54,8 @@ case "$SUBJECT" in
   'fixup! '*) exit 0 ;;
   'squash! '*) exit 0 ;;
   'amend! '*) exit 0 ;;
+  # T13577: the empty commit `cleo init` makes so HEAD resolves (exact subject).
+  'initial: cleo init') exit 0 ;;
 esac
 
 # Match `T` followed by 1+ digits anywhere in the subject.

package/templates/git-hooks/legacy-hashes.json

@@ -14,6 +14,7 @@
   ],
   "pre-push": [
     "8a48d9672f27ae1ea9ebc40d7181ab737a1889e32b451594ba30ac7c2558c07c",
+    "d4cfb6d3b19f3bed129f682fd7f5571b60c0f67433e5219e94c02dbb72007030",
     "eb78947e1aba2bd4e4d5aa010093aa5a927fde0acda7f7d704d41cd4851a3cfb",
     "f6e39d6fb79fed8c6e0bca0edb43fb9421e6a0cae52b0fe1163a8839caf50389"
   ]

package/templates/git-hooks/pre-push

@@ -43,6 +43,9 @@ check_subject() {
     'fixup! '*) return 0 ;;
     'squash! '*) return 0 ;;
     'amend! '*) return 0 ;;
+    # T13577: the empty commit `cleo init` makes so HEAD resolves. Exact
+    # subject only, never a prefix, so it opens no general bypass.
+    'initial: cleo init') return 0 ;;
   esac
   if printf '%s' "$subject" | grep -Eq 'T[0-9]+'; then
     return 0