@cleocode/core 2026.10.5 → 2026.10.6-rc.ci.673

package/dist/docs/docs-update.js

@@ -32,6 +32,7 @@ import { getCleoDirAbsolute } from '../paths.js';
 import { getDb, getNativeTasksDb } from '../store/sqlite.js';
 import { attachmentRefs, attachments } from '../store/tasks-schema.js';
 import { assertTwinCollapseWritable } from '../store/twin-collapse.js';
+import { deriveDocLinks, linksJsonOrNull } from './derive-links.js';
 import { validateDocBody } from './validate-body.js';
 import { getCanonicalCleoVersion } from './version-ssot.js';
 /**
@@ -376,7 +377,7 @@ export async function updateDocBySlug(projectRoot, params) {
                 squashed: false,
                 summary,
                 ownerVersion: getCanonicalCleoVersion(projectRoot),
-                docVersion: oldRow.doc_version ?? 1,
+                docVersion: oldRow.docVersion,
                 dryRun: true,
                 wouldWrite: false,
                 wouldChange,
@@ -429,7 +430,7 @@ export async function updateDocBySlug(projectRoot, params) {
                     ? `slug '${slug}' was left untouched (bytes and lifecycle status unchanged)`
                     : `slug '${slug}' bytes unchanged but lifecycle status changed from '${oldRow.lifecycleStatus}' to '${status}'`,
                 ownerVersion: getCanonicalCleoVersion(projectRoot),
-                docVersion: oldRow.doc_version ?? 1,
+                docVersion: oldRow.docVersion,
             },
         };
     }
@@ -439,6 +440,11 @@ export async function updateDocBySlug(projectRoot, params) {
     // future put of the same content will reuse the file rather than
     // creating a duplicate.
     const mime = hasContent ? 'text/plain' : 'application/octet-stream';
+    // T13357: re-derive mention links from the new body; topics carry over
+    // from the old row (labels do not flow through the update path).
+    const derivedRelatedTasks = buf !== null && hasContent
+        ? linksJsonOrNull(deriveDocLinks(buf.toString('utf-8')).relatedTasks)
+        : (oldRow.relatedTasks ?? null);
     // Contract-compliant BlobAttachment shape (T11262). Historic rows used
     // {name, blobId} which violated the canonical {sha256, storageKey} shape
     // defined in `@cleocode/contracts/attachment.ts` and broke read paths that
@@ -534,6 +540,9 @@ export async function updateDocBySlug(projectRoot, params) {
                 slug,
                 type: oldRow.type ?? null,
                 lifecycleStatus: status,
+                docVersion: oldRow.docVersion + 1,
+                topics: oldRow.topics ?? null,
+                relatedTasks: derivedRelatedTasks,
             })
                 .where(eq(attachments.id, existingNewRow.id))
                 .run();
@@ -552,7 +561,9 @@ export async function updateDocBySlug(projectRoot, params) {
                 ...(oldRow.type ? { type: oldRow.type } : {}),
                 lifecycleStatus: status,
                 ownerVersion: getCanonicalCleoVersion(projectRoot),
-                docVersion: (oldRow.doc_version ?? 0) + 1,
+                docVersion: oldRow.docVersion + 1,
+                topics: oldRow.topics ?? null,
+                relatedTasks: derivedRelatedTasks,
             })
                 .run();
         }
@@ -616,6 +627,15 @@ export async function updateDocBySlug(projectRoot, params) {
             attachedBy,
         },
     });
+    // T13357: refresh the wikilinks edge table after the write. Best-effort —
+    // a graph rebuild failure must not fail the completed update.
+    try {
+        const { rebuildDocsWikilinks } = await import('./wikilinks.js');
+        await rebuildDocsWikilinks({ projectRoot });
+    }
+    catch (rebuildErr) {
+        process.emitWarning(`docs wikilinks rebuild failed after update of slug '${slug}': ${rebuildErr instanceof Error ? rebuildErr.message : String(rebuildErr)}`);
+    }
     return {
         ok: true,
         result: {
@@ -632,7 +652,7 @@ export async function updateDocBySlug(projectRoot, params) {
             squashed,
             summary: `slug '${slug}' was changed — content replaced${params.message ? ` ("${params.message}")` : ''}`,
             ownerVersion: getCanonicalCleoVersion(projectRoot),
-            docVersion: (oldRow.doc_version ?? 1) + 1,
+            docVersion: oldRow.docVersion + 1,
         },
     };
 }

package/dist/docs/docs-update.js.map

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package/dist/docs/fetch-result.d.ts

@@ -0,0 +1,77 @@
+/**
+ * Shared `docs.fetch` / `docs view --json` result builder — T13352.
+ *
+ * Previously both call sites hand-built the envelope: they re-encoded the
+ * already-decoded UTF-8 body to base64, hard-coded `refCount: 0`, and
+ * reported a storage path inside the legacy `.cleo/attachments` tree even
+ * for docs whose bytes live in the blob manifest store (where the reported
+ * path does not exist).
+ *
+ * This builder is the single source of truth for the fetch envelope:
+ *
+ * - **Text docs carry `content`** (decoded UTF-8) directly in the envelope —
+ *   no base64 round-trip for the overwhelmingly common markdown case.
+ *   Binary docs keep `bytesBase64` (≤ 1 MB inline cap).
+ * - **`refCount` is the real value** from the read model
+ *   (`attachments.ref_count`; 0 for manifest-only blobs).
+ * - **`path` resolves against the doc's actual backing store**:
+ *   `manifest-db` → `.cleo/blobs/blobs/<sha256>`; anything else → the legacy
+ *   content-addressed attachment path (with the MIME-correct extension).
+ * - **mime/type come from the record**, never literals.
+ *
+ * @task T13352 (Epic T13340 / Saga T13339)
+ * @see ResolvedDoc — packages/core/src/docs/docs-read-model.ts
+ * @see readDoc — sibling read API with the same utf-8-vs-base64 body rule
+ */
+import type { DocsFetchResult } from '@cleocode/contracts/operations/docs.js';
+import type { ResolvedDoc } from './docs-read-model.js';
+/**
+ * Whether a MIME type denotes UTF-8 text. An absent MIME defaults to text:
+ * docs blobs are overwhelmingly markdown, and the read model has already
+ * decoded the body to a string by the time this predicate runs.
+ *
+ * @param mime - IANA MIME type, or null when unknown.
+ * @returns True when the body should be surfaced as decoded `content`.
+ * @task T13352
+ */
+export declare function isTextMime(mime: string | null): boolean;
+/**
+ * Resolve the on-disk storage path for a doc against its ACTUAL backing
+ * store. `manifest-db` docs live in the blob store
+ * (`.cleo/blobs/blobs/<sha256>`); everything else lives in the legacy
+ * content-addressed attachment tree. Returns undefined for docs without a
+ * content hash.
+ *
+ * @param doc - The resolved doc record.
+ * @param cleoDir - The project's `.cleo` directory.
+ * @returns Absolute storage path, or undefined.
+ * @task T13352
+ */
+export declare function docsStoragePath(doc: ResolvedDoc, cleoDir: string): string | undefined;
+/**
+ * Build the canonical `docs.fetch` result from a resolved doc and its
+ * decoded body. Used by both the dispatch `docs.fetch` handler and the
+ * `docs view --json` renderer, so the envelope shape can never drift
+ * between the two again.
+ *
+ * @param opts.doc - The resolved doc record (metadata source of truth).
+ * @param opts.content - The decoded UTF-8 body from `fetchContent`.
+ * @param opts.projectRoot - Project root (resolves `.cleo` for the path).
+ * @param opts.attachmentBackend - Current backend, echoed into the envelope.
+ * @returns The typed {@link DocsFetchResult}.
+ * @task T13352
+ */
+export declare function buildDocsFetchResult(opts: {
+    doc: ResolvedDoc;
+    content: string;
+    projectRoot: string;
+    /**
+     * Current backend label, echoed into the envelope. Typed as `string`
+     * because core-internal `AttachmentBackend` (`'llmtxt'`) and the contracts
+     * `AttachmentBackend` (`'legacy' | 'llmstxt-v2'`) are two divergent types
+     * (pre-existing debt) — the historical fetch handler passed the internal
+     * value through with a cast, and this builder preserves that behaviour.
+     */
+    attachmentBackend?: string;
+}): DocsFetchResult;
+//# sourceMappingURL=fetch-result.d.ts.map

package/dist/docs/fetch-result.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"fetch-result.d.ts","sourceRoot":"","sources":["../../src/docs/fetch-result.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAIH,OAAO,KAAK,EAAE,eAAe,EAAY,MAAM,wCAAwC,CAAC;AAGxF,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AAsBxD;;;;;;;;GAQG;AACH,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,GAAG,OAAO,CAKvD;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAMrF;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,oBAAoB,CAAC,IAAI,EAAE;IACzC,GAAG,EAAE,WAAW,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,EAAE,MAAM,CAAC;IACpB;;;;;;OAMG;IACH,iBAAiB,CAAC,EAAE,MAAM,CAAC;CAC5B,GAAG,eAAe,CAmClB"}

package/dist/docs/fetch-result.js

@@ -0,0 +1,132 @@
+/**
+ * Shared `docs.fetch` / `docs view --json` result builder — T13352.
+ *
+ * Previously both call sites hand-built the envelope: they re-encoded the
+ * already-decoded UTF-8 body to base64, hard-coded `refCount: 0`, and
+ * reported a storage path inside the legacy `.cleo/attachments` tree even
+ * for docs whose bytes live in the blob manifest store (where the reported
+ * path does not exist).
+ *
+ * This builder is the single source of truth for the fetch envelope:
+ *
+ * - **Text docs carry `content`** (decoded UTF-8) directly in the envelope —
+ *   no base64 round-trip for the overwhelmingly common markdown case.
+ *   Binary docs keep `bytesBase64` (≤ 1 MB inline cap).
+ * - **`refCount` is the real value** from the read model
+ *   (`attachments.ref_count`; 0 for manifest-only blobs).
+ * - **`path` resolves against the doc's actual backing store**:
+ *   `manifest-db` → `.cleo/blobs/blobs/<sha256>`; anything else → the legacy
+ *   content-addressed attachment path (with the MIME-correct extension).
+ * - **mime/type come from the record**, never literals.
+ *
+ * @task T13352 (Epic T13340 / Saga T13339)
+ * @see ResolvedDoc — packages/core/src/docs/docs-read-model.ts
+ * @see readDoc — sibling read API with the same utf-8-vs-base64 body rule
+ */
+import { Buffer } from 'node:buffer';
+import { join } from 'node:path';
+import { resolveCleoDir } from '../paths.js';
+import { blobFilePath } from '../store/blob-keep.js';
+/** Largest body inlined into the envelope (matches the historical cap). */
+const MAX_INLINE_BYTES = 1024 * 1024;
+/**
+ * `application/*` MIME types that are UTF-8 text on the wire. Anything
+ * `text/*` is text by definition; binary `application/*` types (pdf,
+ * octet-stream, zip, wasm, …) are not listed here.
+ */
+const TEXT_APPLICATION_MIMES = new Set([
+    'application/json',
+    'application/xml',
+    'application/yaml',
+    'application/x-yaml',
+    'application/javascript',
+    'application/typescript',
+    'application/toml',
+    'application/x-sh',
+    'application/ld+json',
+]);
+/**
+ * Whether a MIME type denotes UTF-8 text. An absent MIME defaults to text:
+ * docs blobs are overwhelmingly markdown, and the read model has already
+ * decoded the body to a string by the time this predicate runs.
+ *
+ * @param mime - IANA MIME type, or null when unknown.
+ * @returns True when the body should be surfaced as decoded `content`.
+ * @task T13352
+ */
+export function isTextMime(mime) {
+    if (!mime)
+        return true;
+    const base = mime.split(';')[0]?.trim().toLowerCase() ?? '';
+    if (base === 'application/octet-stream')
+        return false;
+    return base.startsWith('text/') || TEXT_APPLICATION_MIMES.has(base);
+}
+/**
+ * Resolve the on-disk storage path for a doc against its ACTUAL backing
+ * store. `manifest-db` docs live in the blob store
+ * (`.cleo/blobs/blobs/<sha256>`); everything else lives in the legacy
+ * content-addressed attachment tree. Returns undefined for docs without a
+ * content hash.
+ *
+ * @param doc - The resolved doc record.
+ * @param cleoDir - The project's `.cleo` directory.
+ * @returns Absolute storage path, or undefined.
+ * @task T13352
+ */
+export function docsStoragePath(doc, cleoDir) {
+    if (!doc.sha256)
+        return undefined;
+    if (doc.source === 'manifest-db') {
+        return join(cleoDir, 'blobs', 'blobs', doc.sha256);
+    }
+    return blobFilePath(cleoDir, doc.sha256, doc.mimeType ?? 'text/markdown');
+}
+/**
+ * Build the canonical `docs.fetch` result from a resolved doc and its
+ * decoded body. Used by both the dispatch `docs.fetch` handler and the
+ * `docs view --json` renderer, so the envelope shape can never drift
+ * between the two again.
+ *
+ * @param opts.doc - The resolved doc record (metadata source of truth).
+ * @param opts.content - The decoded UTF-8 body from `fetchContent`.
+ * @param opts.projectRoot - Project root (resolves `.cleo` for the path).
+ * @param opts.attachmentBackend - Current backend, echoed into the envelope.
+ * @returns The typed {@link DocsFetchResult}.
+ * @task T13352
+ */
+export function buildDocsFetchResult(opts) {
+    const { doc, content, projectRoot, attachmentBackend } = opts;
+    const cleoDir = resolveCleoDir(projectRoot);
+    const contentBytes = Buffer.from(content, 'utf-8');
+    const inline = contentBytes.length <= MAX_INLINE_BYTES;
+    const text = isTextMime(doc.mimeType);
+    const contentField = inline && text ? content : undefined;
+    const bytesBase64 = inline && !text ? contentBytes.toString('base64') : undefined;
+    return {
+        metadata: {
+            id: doc.id,
+            sha256: doc.sha256,
+            kind: 'blob',
+            mime: doc.mimeType ?? 'text/plain',
+            size: doc.sizeBytes,
+            description: doc.summary ?? undefined,
+            createdAt: doc.createdAt,
+            refCount: doc.refCount,
+            ...(doc.slug ? { slug: doc.slug } : {}),
+            ...(doc.kind ? { type: doc.kind } : {}),
+            ...(doc.displayNumber !== null ? { displayNumber: doc.displayNumber } : {}),
+            ...(doc.title ? { title: doc.title } : {}),
+            ...(doc.blobName ? { blobName: doc.blobName } : {}),
+        },
+        path: docsStoragePath(doc, cleoDir),
+        sizeBytes: contentBytes.length,
+        ...(contentField !== undefined ? { content: contentField } : {}),
+        ...(bytesBase64 !== undefined ? { bytesBase64 } : {}),
+        inlined: contentField !== undefined || bytesBase64 !== undefined,
+        ...(attachmentBackend !== undefined
+            ? { attachmentBackend: attachmentBackend }
+            : {}),
+    };
+}
+//# sourceMappingURL=fetch-result.js.map

package/dist/docs/fetch-result.js.map

@@ -0,0 +1 @@
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package/dist/docs/supersede.d.ts.map

@@ -1 +1 @@
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package/dist/docs/supersede.js

@@ -121,6 +121,15 @@ export async function supersedeDoc(projectRoot, params) {
             }
             throw txErr;
         }
+        // T13357: refresh the wikilinks edge table so the new supersedes pair
+        // shows up as graph edges. Best-effort — the supersede itself committed.
+        try {
+            const { rebuildDocsWikilinks } = await import('./wikilinks.js');
+            await rebuildDocsWikilinks({ projectRoot });
+        }
+        catch (rebuildErr) {
+            process.emitWarning(`docs wikilinks rebuild failed after supersede ${oldSlug} -> ${newSlug}: ${rebuildErr instanceof Error ? rebuildErr.message : String(rebuildErr)}`);
+        }
         const edgeId = makeEdgeId(newRow.id, oldRow.id);
         const result = {
             oldSlug,

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package/dist/doctor/db-substrate.d.ts.map

@@ -1 +1 @@
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package/dist/doctor/db-substrate.js

@@ -469,7 +469,10 @@ export function computeMigrationCoverage(snapshotDb, migrationsFolderPath) {
  */
 export function inspectDbFile(entry, filePath, options = {}) {
     const timeoutMs = options.integrityCheckTimeoutMs ?? DEFAULT_INTEGRITY_CHECK_TIMEOUT_MS;
-    const autoQuarantine = options.autoQuarantine ?? true;
+    // A role living in a consolidated store (it has a legacy file) resolves to
+    // the LIVE store: doctor never moves it (a slow integrity_check alone would),
+    // and suggests the guarded `cleo backup recover <role>` instead (T13245).
+    const autoQuarantine = (options.autoQuarantine ?? true) && entry.legacyFilePathTemplate === undefined;
     if (!existsSync(filePath)) {
         return {
             filePath,
@@ -710,6 +713,21 @@ function buildSkippedReport(invariant, description, suggestedFix, reason) {
         skipReason: reason,
     };
 }
+/**
+ * The table holding a tasks-domain concept in a snapshot: the consolidated
+ * prefixed name (`tasks_tasks`, `tasks_sessions`) in the live `cleo.db`,
+ * else the bare name of a pre-consolidation `tasks.db` (T13245). `null`
+ * when neither exists.
+ *
+ * @param snapshot - Open snapshot.
+ * @param bare - The pre-consolidation table name (`tasks`, `sessions`).
+ */
+function tasksDomainTable(snapshot, bare) {
+    const prefixed = `tasks_${bare}`;
+    if (snapshotHasTable(snapshot, prefixed))
+        return prefixed;
+    return snapshotHasTable(snapshot, bare) ? bare : null;
+}
 /**
  * Helper: check whether a SQLite snapshot has a given table.
  *
@@ -768,13 +786,14 @@ export function checkInvariantI1(tasksSnap, brainSnap) {
         return buildSkippedReport('I1', description, I1_FIX, 'brain.db missing or unreadable');
     }
     if (tasksSnap === null) {
-        return buildSkippedReport('I1', description, I1_FIX, 'tasks.db missing or unreadable');
+        return buildSkippedReport('I1', description, I1_FIX, 'the project store is missing or unreadable');
     }
     if (!snapshotHasTable(brainSnap, 'brain_memory_links')) {
         return buildSkippedReport('I1', description, I1_FIX, 'brain.db has no brain_memory_links table');
     }
-    if (!snapshotHasTable(tasksSnap, 'tasks')) {
-        return buildSkippedReport('I1', description, I1_FIX, 'tasks.db has no tasks table');
+    const i1Tasks = tasksDomainTable(tasksSnap, 'tasks');
+    if (i1Tasks === null) {
+        return buildSkippedReport('I1', description, I1_FIX, 'the project store has no tasks table');
     }
     let candidateIds;
     try {
@@ -787,7 +806,7 @@ export function checkInvariantI1(tasksSnap, brainSnap) {
         return buildSkippedReport('I1', description, I1_FIX, `brain.db query threw: ${err instanceof Error ? err.message : String(err)}`);
     }
     const orphans = [];
-    const lookup = tasksSnap.db.prepare('SELECT id FROM tasks WHERE id = ? LIMIT 1');
+    const lookup = tasksSnap.db.prepare(`SELECT id FROM "${i1Tasks}" WHERE id = ? LIMIT 1`);
     for (const taskId of candidateIds) {
         try {
             const row = lookup.get(taskId);
@@ -830,13 +849,14 @@ export function checkInvariantI2(tasksSnap, manifestSnap) {
         return buildSkippedReport('I2', description, I2_FIX, 'manifest.db missing or unreadable');
     }
     if (tasksSnap === null) {
-        return buildSkippedReport('I2', description, I2_FIX, 'tasks.db missing or unreadable');
+        return buildSkippedReport('I2', description, I2_FIX, 'the project store is missing or unreadable');
     }
     if (!snapshotHasTable(manifestSnap, 'blob_attachments')) {
         return buildSkippedReport('I2', description, I2_FIX, 'manifest.db has no blob_attachments table');
     }
-    if (!snapshotHasTable(tasksSnap, 'tasks')) {
-        return buildSkippedReport('I2', description, I2_FIX, 'tasks.db has no tasks table');
+    const i2Tasks = tasksDomainTable(tasksSnap, 'tasks');
+    if (i2Tasks === null) {
+        return buildSkippedReport('I2', description, I2_FIX, 'the project store has no tasks table');
     }
     let candidates;
     try {
@@ -850,7 +870,7 @@ export function checkInvariantI2(tasksSnap, manifestSnap) {
         return buildSkippedReport('I2', description, I2_FIX, `manifest.db query threw: ${err instanceof Error ? err.message : String(err)}`);
     }
     const orphans = [];
-    const lookup = tasksSnap.db.prepare('SELECT id FROM tasks WHERE id = ? LIMIT 1');
+    const lookup = tasksSnap.db.prepare(`SELECT id FROM "${i2Tasks}" WHERE id = ? LIMIT 1`);
     for (const slug of candidates) {
         try {
             const row = lookup.get(slug);
@@ -959,10 +979,11 @@ export function checkInvariantI4(tasksSnap, llmtxtSnap) {
         return buildSkippedReport('I4', description, I4_FIX, 'llmtxt.db missing or unreadable');
     }
     if (tasksSnap === null) {
-        return buildSkippedReport('I4', description, I4_FIX, 'tasks.db missing or unreadable');
+        return buildSkippedReport('I4', description, I4_FIX, 'the project store is missing or unreadable');
     }
-    if (!snapshotHasTable(tasksSnap, 'sessions')) {
-        return buildSkippedReport('I4', description, I4_FIX, 'tasks.db has no sessions table');
+    const i4Sessions = tasksDomainTable(tasksSnap, 'sessions');
+    if (i4Sessions === null) {
+        return buildSkippedReport('I4', description, I4_FIX, 'the project store has no sessions table');
     }
     let userTables;
     try {
@@ -1005,7 +1026,7 @@ export function checkInvariantI4(tasksSnap, llmtxtSnap) {
         }
     }
     const orphans = [];
-    const lookup = tasksSnap.db.prepare('SELECT id FROM sessions WHERE id = ? LIMIT 1');
+    const lookup = tasksSnap.db.prepare(`SELECT id FROM "${i4Sessions}" WHERE id = ? LIMIT 1`);
     for (const sessionId of allCandidates) {
         try {
             const row = lookup.get(sessionId);
@@ -1064,8 +1085,9 @@ export function checkInvariantI5(tasksSnap, brainSnap, conduitSnap) {
     catch (err) {
         return buildSkippedReport('I5', description, I5_FIX, `conduit.db query threw: ${err instanceof Error ? err.message : String(err)}`);
     }
-    const tasksLookup = tasksSnap !== null && snapshotHasTable(tasksSnap, 'tasks')
-        ? tasksSnap.db.prepare('SELECT id FROM tasks WHERE id = ? LIMIT 1')
+    const i5Tasks = tasksSnap !== null ? tasksDomainTable(tasksSnap, 'tasks') : null;
+    const tasksLookup = tasksSnap !== null && i5Tasks !== null
+        ? tasksSnap.db.prepare(`SELECT id FROM "${i5Tasks}" WHERE id = ? LIMIT 1`)
         : null;
     const brainPageLookup = brainSnap !== null && snapshotHasTable(brainSnap, 'brain_page_nodes')
         ? brainSnap.db.prepare('SELECT id FROM brain_page_nodes WHERE id = ? LIMIT 1')
@@ -1157,12 +1179,21 @@ export function walkCrossDbInvariants(projectRoot) {
     const manifestPath = resolveByRole('manifest');
     const llmtxtPath = resolveByRole('llmtxt');
     const nexusPath = resolveByRole('nexus');
-    const tasksSnap = tasksPath ? tryOpenSnapshot(tasksPath) : null;
-    const brainSnap = brainPath ? tryOpenSnapshot(brainPath) : null;
-    const conduitSnap = conduitPath ? tryOpenSnapshot(conduitPath) : null;
-    const manifestSnap = manifestPath ? tryOpenSnapshot(manifestPath) : null;
-    const llmtxtSnap = llmtxtPath ? tryOpenSnapshot(llmtxtPath) : null;
-    const nexusSnap = nexusPath ? tryOpenSnapshot(nexusPath) : null;
+    // One snapshot per file: tasks, brain and conduit share the project cleo.db (T13245).
+    const opened = new Map();
+    const snapOf = (path) => {
+        if (path === null)
+            return null;
+        if (!opened.has(path))
+            opened.set(path, tryOpenSnapshot(path));
+        return opened.get(path) ?? null;
+    };
+    const tasksSnap = snapOf(tasksPath);
+    const brainSnap = snapOf(brainPath);
+    const conduitSnap = snapOf(conduitPath);
+    const manifestSnap = snapOf(manifestPath);
+    const llmtxtSnap = snapOf(llmtxtPath);
+    const nexusSnap = snapOf(nexusPath);
     try {
         const reports = [
             checkInvariantI1(tasksSnap, brainSnap),
@@ -1175,12 +1206,8 @@ export function walkCrossDbInvariants(projectRoot) {
     }
     finally {
         // Close every snapshot we opened, regardless of which checks ran.
-        tasksSnap?.close();
-        brainSnap?.close();
-        conduitSnap?.close();
-        manifestSnap?.close();
-        llmtxtSnap?.close();
-        nexusSnap?.close();
+        for (const snap of opened.values())
+            snap?.close();
     }
 }
 /**
@@ -1199,9 +1226,15 @@ export function walkCrossDbInvariants(projectRoot) {
  */
 export function surveyProjectDbSubstrate(projectRoot, options = {}) {
     const dbs = {};
+    // Roles sharing a file (tasks, brain and conduit: the project cleo.db) are
+    // inspected once (T13245).
+    const byPath = new Map();
     for (const entry of DB_INVENTORY) {
         const filePath = resolveInventoryFilePath(entry, projectRoot);
-        dbs[entry.role] = inspectDbFile(entry, filePath, options);
+        const seen = byPath.get(filePath);
+        const inspected = seen ?? inspectDbFile(entry, filePath, options);
+        byPath.set(filePath, inspected);
+        dbs[entry.role] = inspected;
     }
     return {
         projectRoot,
@@ -1233,7 +1266,9 @@ export function surveyProjectDbSubstrate(projectRoot, options = {}) {
  * @task T10308
  */
 export function isLegitimateCleoProjectRoot(cleoDirPath) {
-    return (existsSync(join(cleoDirPath, 'project-info.json')) && existsSync(join(cleoDirPath, 'tasks.db')));
+    return (existsSync(join(cleoDirPath, 'project-info.json')) &&
+        // The consolidated store, or a pre-consolidation one (T13245).
+        (existsSync(join(cleoDirPath, 'cleo.db')) || existsSync(join(cleoDirPath, 'tasks.db'))));
 }
 /**
  * Best-effort read of the `workspace` field from