@cleocode/core 2.0.0

package/dist/store/data-safety.d.ts.map

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package/dist/store/data-safety.js

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+/**
+ * Data Safety Module - Critical protection layer for CLEO data operations.
+ *
+ * Implements:
+ * - Write verification (verify data was actually persisted)
+ * - Collision detection (prevent duplicate task IDs)
+ * - Sequence validation (ensure sequence counter matches database)
+ * - Auto-checkpoint integration (git commit after writes)
+ *
+ * @task T4739
+ * @epic T4732
+ */
+import { eq } from 'drizzle-orm';
+import { getLogger } from '../logger.js';
+import { checkSequence, repairSequence } from '../sequence/index.js';
+import { gitCheckpoint } from './git-checkpoint.js';
+import { getDb } from './sqlite.js';
+import { vacuumIntoBackup } from './sqlite-backup.js';
+import * as schema from './tasks-schema.js';
+const log = getLogger('data-safety');
+const DEFAULT_CONFIG = {
+    verifyWrites: true,
+    detectCollisions: true,
+    validateSequence: true,
+    autoCheckpoint: true,
+    strictMode: true,
+};
+/** Safety violation error. */
+export class SafetyError extends Error {
+    code;
+    details;
+    constructor(message, code, details) {
+        super(message);
+        this.code = code;
+        this.details = details;
+        this.name = 'SafetyError';
+    }
+}
+/**
+ * Check if a task ID already exists (collision detection).
+ * @throws SafetyError if task exists and strict mode is enabled
+ */
+export async function checkTaskExists(taskId, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    if (!cfg.detectCollisions)
+        return false;
+    const db = await getDb(cwd);
+    const existing = await db.select().from(schema.tasks).where(eq(schema.tasks.id, taskId)).all();
+    const exists = existing.length > 0;
+    if (exists && cfg.strictMode) {
+        throw new SafetyError(`Task ID collision detected: ${taskId} already exists`, 'COLLISION_DETECTED', { taskId, existingTask: existing[0] });
+    }
+    return exists;
+}
+/**
+ * Verify a task was actually written to the database.
+ * @throws SafetyError if verification fails
+ */
+export async function verifyTaskWrite(taskId, expectedData, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    if (!cfg.verifyWrites)
+        return true;
+    const db = await getDb(cwd);
+    const rows = await db.select().from(schema.tasks).where(eq(schema.tasks.id, taskId)).all();
+    if (rows.length === 0) {
+        if (cfg.strictMode) {
+            throw new SafetyError(`Write verification failed: Task ${taskId} not found after write`, 'WRITE_VERIFICATION_FAILED', { taskId });
+        }
+        return false;
+    }
+    // Verify expected data if provided
+    if (expectedData) {
+        const row = rows[0];
+        for (const [key, value] of Object.entries(expectedData)) {
+            if (value !== undefined && row[key] !== value) {
+                if (cfg.strictMode) {
+                    throw new SafetyError(`Write verification failed: Task ${taskId} field ${key} mismatch`, 'WRITE_VERIFICATION_MISMATCH', { taskId, field: key, expected: value, actual: row[key] });
+                }
+                return false;
+            }
+        }
+    }
+    return true;
+}
+/**
+ * Validate and repair sequence if necessary.
+ * @returns true if sequence was valid or successfully repaired
+ */
+export async function validateAndRepairSequence(cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    if (!cfg.validateSequence)
+        return { valid: true, repaired: false };
+    try {
+        const check = await checkSequence(cwd);
+        if (check.valid) {
+            return { valid: true, repaired: false };
+        }
+        // Sequence is behind, repair it
+        const repair = await repairSequence(cwd);
+        if (repair.repaired) {
+            log.warn({ oldCounter: repair.oldCounter, newCounter: repair.newCounter }, 'Sequence repaired');
+            return {
+                valid: true,
+                repaired: true,
+                oldCounter: repair.oldCounter,
+                newCounter: repair.newCounter,
+            };
+        }
+        // repairSequence returning repaired:false means "already valid, nothing to do"
+        return { valid: true, repaired: false };
+    }
+    catch (err) {
+        if (cfg.strictMode) {
+            throw new SafetyError(`Sequence validation failed: ${String(err)}`, 'SEQUENCE_VALIDATION_FAILED', { error: String(err) });
+        }
+        return { valid: false, repaired: false };
+    }
+}
+/**
+ * Trigger auto-checkpoint after successful write.
+ */
+export async function triggerCheckpoint(context, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    if (!cfg.autoCheckpoint)
+        return;
+    try {
+        await gitCheckpoint('auto', context, cwd);
+    }
+    catch (err) {
+        // Checkpoint failures are non-fatal but should be logged
+        log.warn({ err }, 'Checkpoint failed (non-fatal)');
+    }
+    vacuumIntoBackup({ cwd }).catch(() => { }); // non-fatal SQLite snapshot
+}
+/**
+ * Safely create a task with all safety mechanisms.
+ * Wraps the actual createTask operation.
+ */
+export async function safeCreateTask(createFn, task, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    // 1. Validate sequence before creation
+    if (cfg.validateSequence) {
+        await validateAndRepairSequence(cwd, config);
+    }
+    // 2. Check for collisions
+    if (cfg.detectCollisions) {
+        await checkTaskExists(task.id, cwd, config);
+    }
+    // 3. Perform the actual creation
+    const result = await createFn();
+    // 4. Trigger checkpoint
+    if (cfg.autoCheckpoint) {
+        await triggerCheckpoint(`created ${task.id}`, cwd, config);
+    }
+    return result;
+}
+/**
+ * Safely update a task with all safety mechanisms.
+ */
+export async function safeUpdateTask(updateFn, taskId, _updates, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    // 1. Perform the actual update
+    const result = await updateFn();
+    if (!result)
+        return null;
+    // 2. Trigger checkpoint
+    if (cfg.autoCheckpoint) {
+        await triggerCheckpoint(`updated ${taskId}`, cwd, config);
+    }
+    return result;
+}
+/**
+ * Safely delete a task with all safety mechanisms.
+ */
+export async function safeDeleteTask(deleteFn, taskId, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    // 1. Perform the actual deletion
+    const result = await deleteFn();
+    if (!result)
+        return false;
+    // 2. Trigger checkpoint
+    if (cfg.autoCheckpoint) {
+        await triggerCheckpoint(`deleted ${taskId}`, cwd, config);
+    }
+    return result;
+}
+/**
+ * Verify session write.
+ */
+export async function verifySessionWrite(sessionId, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    if (!cfg.verifyWrites)
+        return true;
+    const db = await getDb(cwd);
+    const rows = await db
+        .select()
+        .from(schema.sessions)
+        .where(eq(schema.sessions.id, sessionId))
+        .all();
+    if (rows.length === 0) {
+        if (cfg.strictMode) {
+            throw new SafetyError(`Write verification failed: Session ${sessionId} not found after write`, 'SESSION_WRITE_VERIFICATION_FAILED', { sessionId });
+        }
+        return false;
+    }
+    return true;
+}
+/**
+ * Safely create a session with all safety mechanisms.
+ */
+export async function safeCreateSession(createFn, session, cwd, config = {}) {
+    const cfg = { ...DEFAULT_CONFIG, ...config };
+    // 1. Perform the actual creation
+    const result = await createFn();
+    // 2. Verify the write
+    if (cfg.verifyWrites) {
+        await verifySessionWrite(session.id, cwd, config);
+    }
+    // 3. Trigger checkpoint
+    if (cfg.autoCheckpoint) {
+        await triggerCheckpoint(`session ${session.id} started`, cwd, config);
+    }
+    return result;
+}
+/**
+ * Force a checkpoint before destructive operations.
+ * Use this before migrations, bulk updates, etc.
+ */
+export async function forceCheckpointBeforeOperation(operation, cwd) {
+    log.info({ operation }, 'Forcing checkpoint before operation');
+    try {
+        await gitCheckpoint('manual', `pre-${operation}`, cwd);
+    }
+    catch (err) {
+        log.error({ err }, 'Failed to create pre-operation checkpoint');
+        // Don't throw - checkpoint failures shouldn't block operations
+    }
+    vacuumIntoBackup({ cwd, force: true }).catch(() => { }); // non-fatal SQLite snapshot
+}
+/**
+ * Run comprehensive data integrity check.
+ * Reports all issues found.
+ */
+export async function runDataIntegrityCheck(cwd) {
+    const issues = [];
+    const repairs = [];
+    // 1. Check sequence
+    try {
+        const seqCheck = await checkSequence(cwd);
+        if (!seqCheck.valid) {
+            issues.push(`Sequence invalid: counter ${seqCheck.counter} < max ID T${seqCheck.maxIdInData}`);
+            // Auto-repair
+            const repair = await repairSequence(cwd);
+            if (repair.repaired) {
+                repairs.push(`Sequence repaired: ${repair.oldCounter} -> ${repair.newCounter}`);
+            }
+            else {
+                issues.push('Sequence repair failed');
+            }
+        }
+    }
+    catch (err) {
+        issues.push(`Sequence check failed: ${String(err)}`);
+    }
+    // 2. Check for ghost entries (would need to compare structured audit log with database)
+    // This is a complex check that would require loading the entire log
+    // For now, we skip this but document it as needed
+    return {
+        passed: issues.length === repairs.length,
+        issues,
+        repairs,
+    };
+}
+//# sourceMappingURL=data-safety.js.map

package/dist/store/data-safety.js.map

@@ -0,0 +1 @@
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package/dist/store/db-helpers.d.ts

@@ -0,0 +1,62 @@
+/**
+ * Shared database helper functions for SQLite store modules.
+ *
+ * Consolidates upsert and dependency patterns used across
+ * sqlite-data-accessor.ts, task-store.ts, and session-store.ts.
+ *
+ * @epic T4454
+ */
+import type { NodeSQLiteDatabase } from 'drizzle-orm/node-sqlite';
+import type { Task } from '@cleocode/contracts';
+import type { NewTaskRow } from './tasks-schema.js';
+import * as schema from './tasks-schema.js';
+import type { Session } from './validation-schemas.js';
+/** Drizzle database instance type. */
+type DrizzleDb = NodeSQLiteDatabase<typeof schema>;
+/** Archive-specific fields for task upsert. */
+export interface ArchiveFields {
+    archivedAt?: string;
+    archiveReason?: string;
+    cycleTimeDays?: number | null;
+}
+/**
+ * Upsert a single task row into the tasks table.
+ * Handles both active task upsert and archived task upsert via optional archiveFields.
+ *
+ * Defensively nulls out parentId if it references a non-existent task,
+ * preventing orphaned FK violations from blocking bulk operations (T5034).
+ */
+export declare function upsertTask(db: DrizzleDb, row: NewTaskRow, archiveFields?: ArchiveFields): Promise<void>;
+/**
+ * Upsert a single session row into the sessions table.
+ */
+export declare function upsertSession(db: DrizzleDb, session: Session): Promise<void>;
+/**
+ * Update dependencies for a task: delete existing, then re-insert.
+ * Optionally filters by a set of valid IDs.
+ */
+export declare function updateDependencies(db: DrizzleDb, taskId: string, depends: string[], validIds?: Set<string>): Promise<void>;
+/**
+ * Batch-update dependencies for multiple tasks in two bulk SQL operations.
+ * Replaces per-task updateDependencies() loops with:
+ * 1. Single DELETE for all task IDs
+ * 2. Single INSERT for all dependency rows
+ *
+ * Callers are responsible for wrapping this in a transaction if needed.
+ */
+export declare function batchUpdateDependencies(db: DrizzleDb, tasks: Array<{
+    taskId: string;
+    deps: string[];
+}>, validIds?: Set<string>): Promise<void>;
+/**
+ * Batch-load dependencies for a list of tasks and apply them in-place.
+ * Uses inArray for efficient querying. Optionally filters by a set of valid IDs.
+ */
+export declare function loadDependenciesForTasks(db: DrizzleDb, tasks: Task[], validationIds?: Set<string>): Promise<void>;
+/**
+ * Batch-load relations for a list of tasks and apply them in-place.
+ * Mirrors loadDependenciesForTasks pattern for task_relations table (T5168).
+ */
+export declare function loadRelationsForTasks(db: DrizzleDb, tasks: Task[]): Promise<void>;
+export {};
+//# sourceMappingURL=db-helpers.d.ts.map

package/dist/store/db-helpers.d.ts.map

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package/dist/store/db-helpers.js

@@ -0,0 +1,221 @@
+/**
+ * Shared database helper functions for SQLite store modules.
+ *
+ * Consolidates upsert and dependency patterns used across
+ * sqlite-data-accessor.ts, task-store.ts, and session-store.ts.
+ *
+ * @epic T4454
+ */
+import { eq, inArray } from 'drizzle-orm';
+import * as schema from './tasks-schema.js';
+/**
+ * Upsert a single task row into the tasks table.
+ * Handles both active task upsert and archived task upsert via optional archiveFields.
+ *
+ * Defensively nulls out parentId if it references a non-existent task,
+ * preventing orphaned FK violations from blocking bulk operations (T5034).
+ */
+export async function upsertTask(db, row, archiveFields) {
+    // Defensive: null out parentId if it references a non-existent task (T5034)
+    if (row.parentId) {
+        const parent = await db
+            .select({ id: schema.tasks.id })
+            .from(schema.tasks)
+            .where(eq(schema.tasks.id, row.parentId))
+            .limit(1)
+            .all();
+        if (parent.length === 0) {
+            row = { ...row, parentId: null };
+        }
+    }
+    const values = archiveFields ? { ...row, ...archiveFields, status: 'archived' } : row;
+    const set = {
+        title: row.title,
+        description: row.description,
+        status: archiveFields ? 'archived' : row.status,
+        priority: row.priority,
+        type: row.type,
+        parentId: row.parentId,
+        phase: row.phase,
+        size: row.size,
+        position: row.position,
+        positionVersion: row.positionVersion,
+        labelsJson: row.labelsJson,
+        notesJson: row.notesJson,
+        acceptanceJson: row.acceptanceJson,
+        filesJson: row.filesJson,
+        origin: row.origin,
+        blockedBy: row.blockedBy,
+        epicLifecycle: row.epicLifecycle,
+        noAutoComplete: row.noAutoComplete,
+        createdAt: row.createdAt,
+        updatedAt: row.updatedAt,
+        completedAt: row.completedAt,
+        cancelledAt: row.cancelledAt,
+        cancellationReason: row.cancellationReason,
+        verificationJson: row.verificationJson,
+        createdBy: row.createdBy,
+        modifiedBy: row.modifiedBy,
+        sessionId: row.sessionId,
+        // Always include archive metadata so unarchive clears stale values (T5034)
+        archivedAt: archiveFields?.archivedAt ?? null,
+        archiveReason: archiveFields?.archiveReason ?? null,
+        cycleTimeDays: archiveFields?.cycleTimeDays ?? null,
+    };
+    await db
+        .insert(schema.tasks)
+        .values(values)
+        .onConflictDoUpdate({ target: schema.tasks.id, set })
+        .run();
+}
+/**
+ * Upsert a single session row into the sessions table.
+ */
+export async function upsertSession(db, session) {
+    const sessionName = session.name || `session-${session.id}`;
+    const values = {
+        id: session.id,
+        name: sessionName,
+        status: session.status,
+        scopeJson: JSON.stringify(session.scope ?? { type: 'global' }),
+        currentTask: session.taskWork?.taskId ?? null,
+        taskStartedAt: session.taskWork?.setAt ?? null,
+        agent: session.agent ?? null,
+        notesJson: session.notes ? JSON.stringify(session.notes) : '[]',
+        tasksCompletedJson: session.tasksCompleted ? JSON.stringify(session.tasksCompleted) : '[]',
+        tasksCreatedJson: session.tasksCreated ? JSON.stringify(session.tasksCreated) : '[]',
+        handoffJson: session.handoffJson ?? null,
+        startedAt: session.startedAt,
+        endedAt: session.endedAt ?? null,
+        // Session chain fields (T4959)
+        previousSessionId: session.previousSessionId ?? null,
+        nextSessionId: session.nextSessionId ?? null,
+        agentIdentifier: session.agentIdentifier ?? null,
+        handoffConsumedAt: session.handoffConsumedAt ?? null,
+        handoffConsumedBy: session.handoffConsumedBy ?? null,
+        debriefJson: session.debriefJson ?? null,
+        // Session stats fields
+        statsJson: session.stats ? JSON.stringify(session.stats) : null,
+        resumeCount: session.resumeCount ?? null,
+        gradeMode: session.gradeMode ? 1 : null,
+    };
+    const { id: _id, ...setFields } = values;
+    await db
+        .insert(schema.sessions)
+        .values(values)
+        .onConflictDoUpdate({ target: schema.sessions.id, set: setFields })
+        .run();
+}
+/**
+ * Update dependencies for a task: delete existing, then re-insert.
+ * Optionally filters by a set of valid IDs.
+ */
+export async function updateDependencies(db, taskId, depends, validIds) {
+    await db.delete(schema.taskDependencies).where(eq(schema.taskDependencies.taskId, taskId)).run();
+    for (const depId of depends) {
+        if (!validIds || validIds.has(depId)) {
+            await db
+                .insert(schema.taskDependencies)
+                .values({ taskId, dependsOn: depId })
+                .onConflictDoNothing()
+                .run();
+        }
+    }
+}
+/**
+ * Batch-update dependencies for multiple tasks in two bulk SQL operations.
+ * Replaces per-task updateDependencies() loops with:
+ * 1. Single DELETE for all task IDs
+ * 2. Single INSERT for all dependency rows
+ *
+ * Callers are responsible for wrapping this in a transaction if needed.
+ */
+export async function batchUpdateDependencies(db, tasks, validIds) {
+    if (tasks.length === 0)
+        return;
+    const allTaskIds = tasks.map((t) => t.taskId);
+    // Single DELETE: remove all existing dependencies for these tasks
+    await db
+        .delete(schema.taskDependencies)
+        .where(inArray(schema.taskDependencies.taskId, allTaskIds))
+        .run();
+    // Collect all valid dependency rows
+    const allDepRows = [];
+    for (const { taskId, deps } of tasks) {
+        for (const depId of deps) {
+            if (!validIds || validIds.has(depId)) {
+                allDepRows.push({ taskId, dependsOn: depId });
+            }
+        }
+    }
+    // Single INSERT for all dependency rows
+    if (allDepRows.length > 0) {
+        await db.insert(schema.taskDependencies).values(allDepRows).onConflictDoNothing().run();
+    }
+}
+/**
+ * Batch-load dependencies for a list of tasks and apply them in-place.
+ * Uses inArray for efficient querying. Optionally filters by a set of valid IDs.
+ */
+export async function loadDependenciesForTasks(db, tasks, validationIds) {
+    if (tasks.length === 0)
+        return;
+    const taskIds = tasks.map((t) => t.id);
+    const taskIdSet = validationIds ?? new Set(taskIds);
+    const allDeps = await db
+        .select()
+        .from(schema.taskDependencies)
+        .where(inArray(schema.taskDependencies.taskId, taskIds))
+        .all();
+    const depMap = new Map();
+    for (const dep of allDeps) {
+        if (taskIdSet.has(dep.dependsOn)) {
+            let arr = depMap.get(dep.taskId);
+            if (!arr) {
+                arr = [];
+                depMap.set(dep.taskId, arr);
+            }
+            arr.push(dep.dependsOn);
+        }
+    }
+    for (const task of tasks) {
+        const deps = depMap.get(task.id);
+        if (deps && deps.length > 0) {
+            task.depends = deps;
+        }
+    }
+}
+/**
+ * Batch-load relations for a list of tasks and apply them in-place.
+ * Mirrors loadDependenciesForTasks pattern for task_relations table (T5168).
+ */
+export async function loadRelationsForTasks(db, tasks) {
+    if (tasks.length === 0)
+        return;
+    const taskIds = tasks.map((t) => t.id);
+    const allRels = await db
+        .select()
+        .from(schema.taskRelations)
+        .where(inArray(schema.taskRelations.taskId, taskIds))
+        .all();
+    const relMap = new Map();
+    for (const rel of allRels) {
+        let arr = relMap.get(rel.taskId);
+        if (!arr) {
+            arr = [];
+            relMap.set(rel.taskId, arr);
+        }
+        arr.push({
+            taskId: rel.relatedTo,
+            type: rel.relationType,
+            reason: rel.reason ?? undefined,
+        });
+    }
+    for (const task of tasks) {
+        const relations = relMap.get(task.id);
+        if (relations && relations.length > 0) {
+            task.relates = relations;
+        }
+    }
+}
+//# sourceMappingURL=db-helpers.js.map

package/dist/store/db-helpers.js.map

@@ -0,0 +1 @@
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