@cleocode/cleo 2026.5.4 → 2026.5.5

package/dist/cli/commands/brain.d.ts

@@ -1,37 +0,0 @@
-/**
- * CLI command group: cleo brain
- *
- * Subcommands:
- *   cleo brain maintenance   — run temporal decay + consolidation + embedding backfill
- *   cleo brain backfill      — back-fill brain graph nodes/edges from typed tables
- *   cleo brain purge         — purge noise entries from brain.db
- *   cleo brain plasticity    — STDP plasticity operations
- *   cleo brain quality       — memory quality metrics
- *   cleo brain export        — export brain graph as GEXF or JSON
- *
- * @task T143
- * @epic T134
- * @why Provide a single CLI entry point for brain optimization operations
- * @what Parent command group with subcommands and progress reporting
- */
-/**
- * Root brain command group — registers all brain optimization subcommands.
- *
- * Provides maintenance, backfill, purge, plasticity, quality, and export
- * subcommands for brain.db operations.
- *
- * @task T143
- * @epic T134
- *
- * @example
- * ```ts
- * // Adds: cleo brain maintenance [--skip-decay] [--skip-consolidation] ...
- * //       cleo brain backfill [--json]
- * //       cleo brain purge [--json]
- * //       cleo brain plasticity stats [--limit <n>] [--json]
- * //       cleo brain quality [--json]
- * //       cleo brain export [--format gexf|json] [--output <file>]
- * ```
- */
-export declare const brainCommand: import("citty").CommandDef<import("citty").ArgsDef>;
-//# sourceMappingURL=brain.d.ts.map

package/dist/cli/commands/brain.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"brain.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/brain.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAsdH;;;;;;;;;;;;;;;;;;GAkBG;AACH,eAAO,MAAM,YAAY,qDAevB,CAAC"}

package/dist/cli/commands/brain.js

@@ -1,445 +0,0 @@
-/**
- * CLI command group: cleo brain
- *
- * Subcommands:
- *   cleo brain maintenance   — run temporal decay + consolidation + embedding backfill
- *   cleo brain backfill      — back-fill brain graph nodes/edges from typed tables
- *   cleo brain purge         — purge noise entries from brain.db
- *   cleo brain plasticity    — STDP plasticity operations
- *   cleo brain quality       — memory quality metrics
- *   cleo brain export        — export brain graph as GEXF or JSON
- *
- * @task T143
- * @epic T134
- * @why Provide a single CLI entry point for brain optimization operations
- * @what Parent command group with subcommands and progress reporting
- */
-import { backfillBrainGraph, exportBrainAsGexf, exportBrainAsJson, getMemoryQualityReport, getPlasticityStats, getProjectRoot, purgeBrainNoise, runBrainMaintenance, } from '@cleocode/core/internal';
-import { defineCommand, showUsage } from 'citty';
-/** cleo brain maintenance — temporal decay, consolidation, and embedding backfill */
-const maintenanceCommand = defineCommand({
-    meta: {
-        name: 'maintenance',
-        description: 'Run brain maintenance: temporal decay, consolidation, and embedding backfill',
-    },
-    args: {
-        'skip-decay': {
-            type: 'boolean',
-            description: 'Skip the temporal decay step (confidence reduction on stale learnings)',
-        },
-        'skip-consolidation': {
-            type: 'boolean',
-            description: 'Skip the memory consolidation step (merging old observations)',
-        },
-        'skip-reconciliation': {
-            type: 'boolean',
-            description: 'Skip the cross-DB orphaned reference reconciliation step',
-        },
-        'skip-tier-promotion': {
-            type: 'boolean',
-            description: 'Skip the tier promotion step (short\u2192medium, medium\u2192long promotion)',
-        },
-        'skip-embeddings': {
-            type: 'boolean',
-            description: 'Skip the embedding backfill step (vector generation for observations)',
-        },
-        json: { type: 'boolean', description: 'Output results as JSON' },
-    },
-    async run({ args }) {
-        const root = getProjectRoot();
-        const isJson = !!args.json;
-        if (!isJson) {
-            console.log('Running brain maintenance...');
-        }
-        try {
-            const result = await runBrainMaintenance(root, {
-                skipDecay: !!args['skip-decay'],
-                skipConsolidation: !!args['skip-consolidation'],
-                skipReconciliation: !!args['skip-reconciliation'],
-                skipTierPromotion: !!args['skip-tier-promotion'],
-                skipEmbeddings: !!args['skip-embeddings'],
-                onProgress: isJson
-                    ? undefined
-                    : (step, current, total) => {
-                        if (step === 'embeddings' && total > 0) {
-                            if (process.stdout.isTTY) {
-                                process.stdout.clearLine(0);
-                                process.stdout.cursorTo(0);
-                                process.stdout.write(`  [embeddings] ${current}/${total}...`);
-                            }
-                            else if (current === 1 || current === total) {
-                                console.log(`  [embeddings] ${current}/${total}...`);
-                            }
-                        }
-                        else if (current === 0) {
-                            console.log(`  [${step}] starting...`);
-                        }
-                        else if (current === total && total > 0) {
-                            if (step === 'embeddings' && process.stdout.isTTY) {
-                                process.stdout.write('\n');
-                            }
-                            console.log(`  [${step}] done`);
-                        }
-                    },
-            });
-            if (isJson) {
-                console.log(JSON.stringify(result, null, 2));
-                return;
-            }
-            console.log('\nMaintenance complete.');
-            console.log(`  Duration: ${result.duration}ms`);
-            if (!args['skip-decay']) {
-                console.log(`  Decay:         ${result.decay.affected} learning(s) updated`);
-            }
-            if (!args['skip-consolidation']) {
-                console.log(`  Consolidation: ${result.consolidation.merged} merged, ${result.consolidation.removed} archived`);
-            }
-            if (!args['skip-tier-promotion']) {
-                console.log(`  Tier promotion: ${result.tierPromotion.promoted} promoted, ${result.tierPromotion.evicted} evicted`);
-            }
-            if (!args['skip-reconciliation']) {
-                console.log(`  Reconcile:     ${result.reconciliation.decisionsFixed} decisions, ${result.reconciliation.observationsFixed} observations, ${result.reconciliation.linksRemoved} links`);
-            }
-            if (!args['skip-embeddings']) {
-                console.log(`  Embeddings:    ${result.embeddings.processed} processed, ${result.embeddings.skipped} skipped, ${result.embeddings.errors} errors`);
-            }
-        }
-        catch (err) {
-            const message = err instanceof Error ? err.message : String(err);
-            if (isJson) {
-                console.log(JSON.stringify({ error: message }));
-            }
-            else {
-                console.error(`Brain maintenance failed: ${message}`);
-            }
-            process.exit(1);
-        }
-    },
-});
-/** cleo brain backfill — back-fill brain graph from surviving typed table rows */
-const backfillCommand = defineCommand({
-    meta: {
-        name: 'backfill',
-        description: 'Back-fill brain_page_nodes and brain_page_edges from all surviving typed table rows (decisions, patterns, learnings, observations, sticky notes). Safe to re-run — duplicates are silently skipped.',
-    },
-    args: {
-        json: { type: 'boolean', description: 'Output results as JSON' },
-    },
-    async run({ args }) {
-        const root = getProjectRoot();
-        const isJson = !!args.json;
-        if (!isJson) {
-            console.log('Running brain graph back-fill...');
-        }
-        try {
-            const result = await backfillBrainGraph(root);
-            if (isJson) {
-                console.log(JSON.stringify({
-                    success: true,
-                    data: result,
-                    meta: { operation: 'brain.backfill', timestamp: new Date().toISOString() },
-                }, null, 2));
-                return;
-            }
-            console.log('\nBack-fill complete.');
-            console.log(`  Before: ${result.before.nodes} nodes, ${result.before.edges} edges`);
-            console.log(`  Source: ${result.before.decisions} decisions, ${result.before.patterns} patterns, ${result.before.learnings} learnings, ${result.before.observations} observations, ${result.before.stickyNotes} stickies`);
-            console.log(`  Nodes inserted: ${result.nodesInserted} (including ${result.stubsCreated} stub nodes)`);
-            console.log(`  Edges inserted: ${result.edgesInserted}`);
-            console.log(`  After:  ${result.after.nodes} nodes, ${result.after.edges} edges`);
-            console.log('\n  By type:');
-            for (const [type, count] of Object.entries(result.byType)) {
-                console.log(`    ${type}: ${count}`);
-            }
-        }
-        catch (err) {
-            const message = err instanceof Error ? err.message : String(err);
-            if (isJson) {
-                console.log(JSON.stringify({ success: false, error: message }));
-            }
-            else {
-                console.error(`Brain backfill failed: ${message}`);
-            }
-            process.exit(1);
-        }
-    },
-});
-/** cleo brain purge — purge noise entries from brain.db */
-const purgeCommand = defineCommand({
-    meta: {
-        name: 'purge',
-        description: 'Purge noise entries from brain.db — removes duplicate patterns, all learnings, test decisions, and task-lifecycle observations. TAKE A BACKUP FIRST.',
-    },
-    args: {
-        json: { type: 'boolean', description: 'Output results as JSON' },
-    },
-    async run({ args }) {
-        const root = getProjectRoot();
-        const isJson = !!args.json;
-        if (!isJson) {
-            console.log('Running brain noise purge...');
-            console.log('Safety check: verifying D-mntpeeer exists before any deletes...');
-        }
-        try {
-            const result = await purgeBrainNoise(root);
-            if (isJson) {
-                console.log(JSON.stringify({
-                    success: true,
-                    data: result,
-                    meta: { operation: 'brain.purge', timestamp: new Date().toISOString() },
-                }, null, 2));
-                return;
-            }
-            console.log('\nPurge complete.');
-            console.log(`  Patterns deleted:     ${result.patternsDeleted}`);
-            console.log(`  Learnings deleted:    ${result.learningsDeleted}`);
-            console.log(`  Decisions deleted:    ${result.decisionsDeleted}`);
-            console.log(`  Observations deleted: ${result.observationsDeleted}`);
-            console.log('\nPost-purge counts:');
-            console.log(`  Patterns:     ${result.after.patterns}`);
-            console.log(`  Learnings:    ${result.after.learnings}`);
-            console.log(`  Decisions:    ${result.after.decisions}`);
-            console.log(`  Observations: ${result.after.observations}`);
-            console.log(`  FTS5 rebuilt: ${result.fts5Rebuilt}`);
-        }
-        catch (err) {
-            const message = err instanceof Error ? err.message : String(err);
-            if (isJson) {
-                console.log(JSON.stringify({ success: false, error: message }));
-            }
-            else {
-                console.error(`Brain purge failed: ${message}`);
-            }
-            process.exit(1);
-        }
-    },
-});
-/** cleo brain plasticity stats — show recent STDP plasticity events */
-const plasticityStatsCommand = defineCommand({
-    meta: {
-        name: 'stats',
-        description: 'Show recent STDP plasticity events: LTP/LTD counts, net weight delta, and most recent events.',
-    },
-    args: {
-        limit: {
-            type: 'string',
-            description: 'Maximum recent events to show (default 20)',
-            default: '20',
-        },
-        json: { type: 'boolean', description: 'Output results as JSON' },
-    },
-    async run({ args }) {
-        const root = getProjectRoot();
-        const isJson = !!args.json;
-        const limit = Number.parseInt(args.limit, 10) || 20;
-        try {
-            const stats = await getPlasticityStats(root, limit);
-            if (isJson) {
-                console.log(JSON.stringify({
-                    success: true,
-                    data: stats,
-                    meta: { operation: 'brain.plasticity.stats', timestamp: new Date().toISOString() },
-                }, null, 2));
-                return;
-            }
-            console.log('\nBrain Plasticity Stats (STDP)');
-            console.log('\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550');
-            console.log(`  Total events:       ${stats.totalEvents}`);
-            console.log(`  LTP (potentiation): ${stats.ltpCount}`);
-            console.log(`  LTD (depression):   ${stats.ltdCount}`);
-            const sign = stats.netDeltaW >= 0 ? '+' : '';
-            console.log(`  Net \u0394w:             ${sign}${stats.netDeltaW.toFixed(4)}`);
-            console.log(`  Last event:         ${stats.lastEventAt ?? '(none)'}`);
-            if (stats.recentEvents.length > 0) {
-                console.log(`\nRecent Events (newest first, limit=${limit})`);
-                for (const ev of stats.recentEvents) {
-                    const evSign = ev.deltaW >= 0 ? '+' : '';
-                    const src = ev.sourceNode.slice(0, 30).padEnd(30);
-                    const tgt = ev.targetNode.slice(0, 30).padEnd(30);
-                    console.log(`  [${ev.kind.toUpperCase()}] ${src} \u2192 ${tgt}  \u0394w=${evSign}${ev.deltaW.toFixed(4)}  ${ev.timestamp}`);
-                }
-            }
-            else {
-                console.log('\n  No plasticity events recorded yet.');
-                console.log('  Run `cleo brain maintenance` or `cleo session end` to trigger STDP.');
-            }
-        }
-        catch (err) {
-            const message = err instanceof Error ? err.message : String(err);
-            if (isJson) {
-                console.log(JSON.stringify({ success: false, error: message }));
-            }
-            else {
-                console.error(`Brain plasticity stats failed: ${message}`);
-            }
-            process.exit(1);
-        }
-    },
-});
-/** cleo brain plasticity — STDP timing-dependent plasticity operations */
-const plasticityCommand = defineCommand({
-    meta: {
-        name: 'plasticity',
-        description: 'STDP timing-dependent plasticity operations (T626 phase 5)',
-    },
-    subCommands: {
-        stats: plasticityStatsCommand,
-    },
-});
-/** cleo brain quality — memory quality metrics */
-const qualityCommand = defineCommand({
-    meta: {
-        name: 'quality',
-        description: 'Show memory quality metrics: retrieval rates, top/never-retrieved entries, quality distribution, and noise ratio.',
-    },
-    args: {
-        json: { type: 'boolean', description: 'Output results as JSON' },
-    },
-    async run({ args }) {
-        const root = getProjectRoot();
-        const isJson = !!args.json;
-        try {
-            const report = await getMemoryQualityReport(root);
-            if (isJson) {
-                console.log(JSON.stringify({
-                    success: true,
-                    data: report,
-                    meta: { operation: 'brain.quality', timestamp: new Date().toISOString() },
-                }, null, 2));
-                return;
-            }
-            console.log('\nBrain Memory Quality Report');
-            console.log('\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550');
-            console.log(`  Total retrievals:       ${report.totalRetrievals}`);
-            console.log(`  Unique entries hit:     ${report.uniqueEntriesRetrieved}`);
-            console.log(`  Usage rate:             ${(report.usageRate * 100).toFixed(1)}%`);
-            console.log(`  Noise ratio:            ${(report.noiseRatio * 100).toFixed(1)}%`);
-            console.log('\nQuality Distribution');
-            console.log(`  Low  (<0.3):    ${report.qualityDistribution.low}`);
-            console.log(`  Med  (0.3-0.6): ${report.qualityDistribution.medium}`);
-            console.log(`  High (>0.6):    ${report.qualityDistribution.high}`);
-            console.log('\nTier Distribution');
-            console.log(`  Short:   ${report.tierDistribution.short}`);
-            console.log(`  Medium:  ${report.tierDistribution.medium}`);
-            console.log(`  Long:    ${report.tierDistribution.long}`);
-            if (report.tierDistribution.unknown > 0) {
-                console.log(`  Unknown: ${report.tierDistribution.unknown}`);
-            }
-            if (report.topRetrieved.length > 0) {
-                console.log('\nTop 10 Most Retrieved');
-                for (const e of report.topRetrieved) {
-                    console.log(`  [${e.citationCount}x] ${e.id}  ${e.title.slice(0, 60)}`);
-                }
-            }
-            if (report.neverRetrieved.length > 0) {
-                console.log('\nNever Retrieved (pruning candidates)');
-                for (const e of report.neverRetrieved) {
-                    console.log(`  q=${e.qualityScore.toFixed(2)}  ${e.id}  ${e.title.slice(0, 60)}`);
-                }
-            }
-        }
-        catch (err) {
-            const message = err instanceof Error ? err.message : String(err);
-            if (isJson) {
-                console.log(JSON.stringify({ success: false, error: message }));
-            }
-            else {
-                console.error(`Brain quality report failed: ${message}`);
-            }
-            process.exit(1);
-        }
-    },
-});
-/** cleo brain export — export brain graph as GEXF or JSON */
-const exportCommand = defineCommand({
-    meta: {
-        name: 'export',
-        description: 'Export brain graph as GEXF (Gephi) or JSON format',
-    },
-    args: {
-        format: {
-            type: 'string',
-            description: 'Export format: gexf (Gephi standard) or json (flat arrays)',
-            default: 'gexf',
-        },
-        output: {
-            type: 'string',
-            description: 'Write to file instead of stdout (optional)',
-        },
-    },
-    async run({ args }) {
-        const root = getProjectRoot();
-        const format = args.format ?? 'gexf';
-        if (format !== 'gexf' && format !== 'json') {
-            console.error(`Invalid format: ${format}. Use 'gexf' or 'json'.`);
-            process.exit(1);
-        }
-        try {
-            let content;
-            let nodeCount;
-            let edgeCount;
-            if (format === 'gexf') {
-                const result = await exportBrainAsGexf(root);
-                content = result.content;
-                nodeCount = result.nodeCount;
-                edgeCount = result.edgeCount;
-            }
-            else {
-                const result = await exportBrainAsJson(root);
-                content = JSON.stringify(result, null, 2);
-                nodeCount = result.nodeCount;
-                edgeCount = result.edgeCount;
-            }
-            if (args.output) {
-                const fs = await import('node:fs');
-                fs.writeFileSync(args.output, content, 'utf-8');
-                console.log(`Exported to ${args.output}: ${nodeCount} nodes, ${edgeCount} edges (${format.toUpperCase()})`);
-            }
-            else {
-                console.log(content);
-            }
-        }
-        catch (err) {
-            const message = err instanceof Error ? err.message : String(err);
-            console.error(`Brain export failed: ${message}`);
-            process.exit(1);
-        }
-    },
-});
-/**
- * Root brain command group — registers all brain optimization subcommands.
- *
- * Provides maintenance, backfill, purge, plasticity, quality, and export
- * subcommands for brain.db operations.
- *
- * @task T143
- * @epic T134
- *
- * @example
- * ```ts
- * // Adds: cleo brain maintenance [--skip-decay] [--skip-consolidation] ...
- * //       cleo brain backfill [--json]
- * //       cleo brain purge [--json]
- * //       cleo brain plasticity stats [--limit <n>] [--json]
- * //       cleo brain quality [--json]
- * //       cleo brain export [--format gexf|json] [--output <file>]
- * ```
- */
-export const brainCommand = defineCommand({
-    meta: { name: 'brain', description: 'Brain memory optimization operations' },
-    subCommands: {
-        maintenance: maintenanceCommand,
-        backfill: backfillCommand,
-        purge: purgeCommand,
-        plasticity: plasticityCommand,
-        quality: qualityCommand,
-        export: exportCommand,
-    },
-    async run({ cmd, rawArgs }) {
-        const firstArg = rawArgs?.find((a) => !a.startsWith('-'));
-        if (firstArg && cmd.subCommands && firstArg in cmd.subCommands)
-            return;
-        await showUsage(cmd);
-    },
-});
-//# sourceMappingURL=brain.js.map

package/dist/cli/commands/brain.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/briefing.d.ts

@@ -1,52 +0,0 @@
-/**
- * CLI briefing command — show composite session-start context.
- *
- * Aggregates session-start context from multiple sources:
- * - Last session handoff
- * - Current focus
- * - Top-N next tasks
- * - Open bugs
- * - Blocked tasks
- * - Active epics
- * - Pipeline stage
- *
- * @task T4916
- * @epic T4914
- */
-/**
- * Root briefing command — show composite session-start context.
- *
- * Dispatches to `session.briefing.show` with optional scope and result-count
- * limits. Use at session start to restore context quickly.
- *
- * @task T4916
- * @epic T4914
- */
-export declare const briefingCommand: import("citty").CommandDef<{
-    readonly scope: {
-        readonly type: "string";
-        readonly description: "Scope filter (global or epic:T###)";
-        readonly alias: "s";
-    };
-    readonly 'max-next': {
-        readonly type: "string";
-        readonly description: "Maximum next tasks to show";
-        readonly default: "5";
-    };
-    readonly 'max-bugs': {
-        readonly type: "string";
-        readonly description: "Maximum bugs to show";
-        readonly default: "10";
-    };
-    readonly 'max-blocked': {
-        readonly type: "string";
-        readonly description: "Maximum blocked tasks to show";
-        readonly default: "10";
-    };
-    readonly 'max-epics': {
-        readonly type: "string";
-        readonly description: "Maximum active epics to show";
-        readonly default: "5";
-    };
-}>;
-//# sourceMappingURL=briefing.d.ts.map

package/dist/cli/commands/briefing.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"briefing.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/briefing.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH;;;;;;;;GAQG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;EAgD1B,CAAC"}

package/dist/cli/commands/briefing.js

@@ -1,69 +0,0 @@
-/**
- * CLI briefing command — show composite session-start context.
- *
- * Aggregates session-start context from multiple sources:
- * - Last session handoff
- * - Current focus
- * - Top-N next tasks
- * - Open bugs
- * - Blocked tasks
- * - Active epics
- * - Pipeline stage
- *
- * @task T4916
- * @epic T4914
- */
-import { defineCommand } from 'citty';
-import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
-/**
- * Root briefing command — show composite session-start context.
- *
- * Dispatches to `session.briefing.show` with optional scope and result-count
- * limits. Use at session start to restore context quickly.
- *
- * @task T4916
- * @epic T4914
- */
-export const briefingCommand = defineCommand({
-    meta: {
-        name: 'briefing',
-        description: 'Session resume context: last handoff, current task, next tasks, bugs, blockers, epics, and memory. Use at session start to restore context.',
-    },
-    args: {
-        scope: {
-            type: 'string',
-            description: 'Scope filter (global or epic:T###)',
-            alias: 's',
-        },
-        'max-next': {
-            type: 'string',
-            description: 'Maximum next tasks to show',
-            default: '5',
-        },
-        'max-bugs': {
-            type: 'string',
-            description: 'Maximum bugs to show',
-            default: '10',
-        },
-        'max-blocked': {
-            type: 'string',
-            description: 'Maximum blocked tasks to show',
-            default: '10',
-        },
-        'max-epics': {
-            type: 'string',
-            description: 'Maximum active epics to show',
-            default: '5',
-        },
-    },
-    async run({ args }) {
-        await dispatchFromCli('query', 'session', 'briefing.show', {
-            scope: args.scope,
-            maxNextTasks: parseInt(args['max-next'], 10),
-            maxBugs: parseInt(args['max-bugs'], 10),
-            maxBlocked: parseInt(args['max-blocked'], 10),
-            maxEpics: parseInt(args['max-epics'], 10),
-        }, { command: 'briefing' });
-    },
-});
-//# sourceMappingURL=briefing.js.map

package/dist/cli/commands/briefing.js.map

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