@cleocode/cleo 2026.5.3 → 2026.5.5

package/dist/cli/commands/manifest.js

@@ -1,334 +0,0 @@
-/**
- * CLI manifest command group for pipeline_manifest table operations.
- *
- * Subcommands:
- *   cleo manifest show <id>                  — show a single manifest entry by ID
- *   cleo manifest list [options]             — list manifest entries with filters
- *   cleo manifest find <query>               — full-text search manifest entries
- *   cleo manifest stats [options]            — aggregate statistics
- *   cleo manifest append [options]           — append a new manifest entry
- *   cleo manifest archive <id|--before>     — archive manifest entries
- *
- * Per spec: T1096 — Unified Manifest CLI Surface
- */
-import { buildManifestEntryFromShorthand } from '@cleocode/core/memory/manifest-builder.js';
-import { defineCommand, showUsage } from 'citty';
-import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
-import { isSubCommandDispatch } from '../lib/subcommand-guard.js';
-// ---------------------------------------------------------------------------
-// Subcommands
-// ---------------------------------------------------------------------------
-/** cleo manifest show <id> — show a single manifest entry */
-const showCommand = defineCommand({
-    meta: {
-        name: 'show',
-        description: 'Show a manifest entry by ID',
-    },
-    args: {
-        id: {
-            type: 'positional',
-            description: 'Pipeline manifest entry ID',
-            required: true,
-        },
-    },
-    async run({ args }) {
-        await dispatchFromCli('query', 'pipeline', 'manifest.show', { entryId: args.id }, { command: 'manifest show' });
-    },
-});
-/** cleo manifest list — list manifest entries with optional filters */
-const listCommand = defineCommand({
-    meta: {
-        name: 'list',
-        description: 'List manifest entries with optional filters',
-    },
-    args: {
-        filter: {
-            type: 'string',
-            description: 'Filter by status: active|archived|distilled|pending',
-        },
-        task: {
-            type: 'string',
-            description: 'Filter by task_id',
-        },
-        epic: {
-            type: 'string',
-            description: 'Filter by epic_id',
-        },
-        type: {
-            type: 'string',
-            description: 'Filter by entry type',
-        },
-        limit: {
-            type: 'string',
-            description: 'Maximum rows to return (default: 50, max: 500)',
-        },
-        offset: {
-            type: 'string',
-            description: 'Pagination offset (default: 0)',
-        },
-        json: {
-            type: 'boolean',
-            description: 'Output as JSON array (default: table)',
-            default: false,
-        },
-    },
-    async run({ args }) {
-        const limit = args.limit ? Number.parseInt(args.limit, 10) : 50;
-        const offset = args.offset ? Number.parseInt(args.offset, 10) : 0;
-        await dispatchFromCli('query', 'pipeline', 'manifest.list', {
-            filter: args.filter,
-            taskId: args.task,
-            epicId: args.epic,
-            type: args.type,
-            limit,
-            offset,
-            json: args.json,
-        }, { command: 'manifest list' });
-    },
-});
-/** cleo manifest find <query> — full-text search manifest entries */
-const findCommand = defineCommand({
-    meta: {
-        name: 'find',
-        description: 'Full-text search manifest entries',
-    },
-    args: {
-        query: {
-            type: 'positional',
-            description: 'Full-text search string',
-            required: true,
-        },
-        limit: {
-            type: 'string',
-            description: 'Maximum rows to return (default: 20)',
-        },
-        json: {
-            type: 'boolean',
-            description: 'Output as JSON array',
-            default: false,
-        },
-    },
-    async run({ args }) {
-        const limit = args.limit ? Number.parseInt(args.limit, 10) : 20;
-        await dispatchFromCli('query', 'pipeline', 'manifest.find', {
-            query: args.query,
-            limit,
-            json: args.json,
-        }, { command: 'manifest find' });
-    },
-});
-/** cleo manifest stats — aggregate statistics */
-const statsCommand = defineCommand({
-    meta: {
-        name: 'stats',
-        description: 'Aggregate manifest statistics',
-    },
-    args: {
-        json: {
-            type: 'boolean',
-            description: 'Output as JSON object',
-            default: false,
-        },
-    },
-    async run({ args }) {
-        await dispatchFromCli('query', 'pipeline', 'manifest.stats', {
-            json: args.json,
-        }, { command: 'manifest stats' });
-    },
-});
-/** cleo manifest append — append a new manifest entry */
-const appendCommand = defineCommand({
-    meta: {
-        name: 'append',
-        description: 'Append a new manifest entry (pipeline_manifest table). Accepts either a full ' +
-            '--entry JSON blob / --file / stdin, OR the shorthand --task + --type + --content ' +
-            'flags which build a valid entry with sensible defaults for id/file/title/date/etc.',
-    },
-    args: {
-        entry: {
-            type: 'string',
-            description: 'JSON string of entry fields (full ManifestEntry shape)',
-        },
-        task: {
-            type: 'string',
-            description: 'Task ID to associate — becomes linked_tasks[0] + id prefix (shorthand)',
-        },
-        type: {
-            type: 'string',
-            description: 'Entry type — becomes agent_type (e.g. research, implementation, decomposition) (shorthand)',
-        },
-        content: {
-            type: 'string',
-            description: 'One-paragraph summary — becomes key_findings[0] and title (first line) (shorthand)',
-        },
-        title: {
-            type: 'string',
-            description: 'Explicit title override for shorthand mode',
-        },
-        status: {
-            type: 'string',
-            description: 'Entry status: completed (default) | partial | blocked (shorthand)',
-        },
-        file: {
-            type: 'string',
-            description: 'Path to JSON file containing entry',
-        },
-    },
-    async run({ args }) {
-        let entry;
-        const hasShorthand = Boolean(args.task || args.type || args.content);
-        if (args.entry) {
-            // Full entry JSON — parse, then allow shorthand to override individual fields.
-            try {
-                entry = JSON.parse(args.entry);
-            }
-            catch (_err) {
-                console.error('Error: --entry must be valid JSON');
-                process.exit(1);
-            }
-        }
-        else if (args.file) {
-            // Load entry from file
-            try {
-                const fs = await import('node:fs');
-                const fileContent = fs.readFileSync(args.file, 'utf-8');
-                entry = JSON.parse(fileContent);
-            }
-            catch (_err) {
-                console.error(`Error: failed to read or parse ${args.file}`);
-                process.exit(1);
-            }
-        }
-        else if (hasShorthand) {
-            // Shorthand-only: defer to the core SDK helper so the CLI stays a thin
-            // adapter (AGENTS.md package boundary / T1096). Keeps the defaulting
-            // logic reusable by Studio, VS Code extension, API server, and direct
-            // SDK callers.
-            entry = {
-                ...buildManifestEntryFromShorthand({
-                    task: args.task,
-                    type: args.type,
-                    content: args.content,
-                    title: args.title,
-                    status: args.status,
-                }),
-            };
-        }
-        else {
-            // Try to read from stdin
-            const stdinData = await readStdin();
-            if (!stdinData) {
-                console.error('Error: must provide --entry JSON, --file path, stdin, or shorthand ' +
-                    '(--task + --type + --content)');
-                process.exit(1);
-            }
-            try {
-                entry = JSON.parse(stdinData);
-            }
-            catch (_err) {
-                console.error('Error: stdin must be valid JSON');
-                process.exit(1);
-            }
-        }
-        // Shorthand overrides applied ONLY when user provided --entry / --file /
-        // stdin — let individual fields be surgically updated. (For pure shorthand
-        // mode the entry is already fully built above.)
-        if ((args.entry || args.file) && hasShorthand) {
-            if (args.task) {
-                entry.linked_tasks = Array.isArray(entry.linked_tasks)
-                    ? [args.task, ...entry.linked_tasks.filter((t) => t !== args.task)]
-                    : [args.task];
-            }
-            if (args.type) {
-                entry.agent_type = args.type;
-            }
-            if (args.content && !entry.key_findings) {
-                entry.key_findings = [args.content];
-            }
-            if (args.title) {
-                entry.title = args.title;
-            }
-            if (args.status) {
-                entry.status = args.status;
-            }
-        }
-        await dispatchFromCli('mutate', 'pipeline', 'manifest.append', { entry }, { command: 'manifest append' });
-    },
-});
-/** cleo manifest archive — archive manifest entries */
-const archiveCommand = defineCommand({
-    meta: {
-        name: 'archive',
-        description: 'Archive manifest entries',
-    },
-    args: {
-        id: {
-            type: 'positional',
-            description: 'Entry ID to archive',
-        },
-        'before-date': {
-            type: 'string',
-            description: 'Archive all active entries created before ISO date (YYYY-MM-DD)',
-        },
-    },
-    async run({ args }) {
-        // Ensure either id or before-date is provided
-        if (!args.id && !args['before-date']) {
-            console.error('Error: must provide either <id> positional argument or --before-date flag');
-            process.exit(1);
-        }
-        // Ensure id and before-date are not both provided
-        if (args.id && args['before-date']) {
-            console.error('Error: --before-date is mutually exclusive with <id> positional argument');
-            process.exit(1);
-        }
-        const dispatchPayload = args.id ? { id: args.id } : { beforeDate: args['before-date'] };
-        await dispatchFromCli('mutate', 'pipeline', 'manifest.archive', dispatchPayload, {
-            command: 'manifest archive',
-        });
-    },
-});
-// ---------------------------------------------------------------------------
-// Helper: read stdin
-// ---------------------------------------------------------------------------
-async function readStdin() {
-    if (process.stdin.isTTY) {
-        return '';
-    }
-    return new Promise((resolve, reject) => {
-        let data = '';
-        process.stdin.setEncoding('utf-8');
-        process.stdin.on('data', (chunk) => {
-            data += chunk;
-        });
-        process.stdin.on('end', () => {
-            resolve(data.trim());
-        });
-        process.stdin.on('error', reject);
-    });
-}
-// ---------------------------------------------------------------------------
-// Main manifest command group
-// ---------------------------------------------------------------------------
-export const manifestCommand = defineCommand({
-    meta: {
-        name: 'manifest',
-        description: 'Manifest operations (pipeline_manifest table)',
-    },
-    subCommands: {
-        show: showCommand,
-        list: listCommand,
-        find: findCommand,
-        stats: statsCommand,
-        append: appendCommand,
-        archive: archiveCommand,
-    },
-    async run({ cmd, rawArgs }) {
-        // Citty's `runCommand` runs the parent's `run()` AFTER the subcommand.
-        // Early-return when a subcommand has matched so stdout stays clean (T1187-followup).
-        if (isSubCommandDispatch(rawArgs, cmd.subCommands))
-            return;
-        await showUsage(cmd);
-    },
-});
-//# sourceMappingURL=manifest.js.map

package/dist/cli/commands/manifest.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/map.d.ts

@@ -1,25 +0,0 @@
-/**
- * CLI map command - codebase analysis and mapping.
- *
- * Analyzes codebase structure and returns a structured mapping. Optionally
- * stores findings to brain.db when `--store` is given.
- *
- * @epic cognitive-cleo
- * @task T487
- */
-/**
- * cleo map — analyze codebase structure and return structured mapping.
- *
- * Dispatches to `admin.map` via the query (or mutate when `--store`) gateway.
- */
-export declare const mapCommand: import("citty").CommandDef<{
-    readonly store: {
-        readonly type: "boolean";
-        readonly description: "Store findings to brain.db";
-    };
-    readonly focus: {
-        readonly type: "string";
-        readonly description: "Focus on one area: stack, architecture, structure, conventions, testing, integrations, concerns";
-    };
-}>;
-//# sourceMappingURL=map.d.ts.map

package/dist/cli/commands/map.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"map.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/map.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAKH;;;;GAIG;AACH,eAAO,MAAM,UAAU;;;;;;;;;EAmBrB,CAAC"}

package/dist/cli/commands/map.js

@@ -1,37 +0,0 @@
-/**
- * CLI map command - codebase analysis and mapping.
- *
- * Analyzes codebase structure and returns a structured mapping. Optionally
- * stores findings to brain.db when `--store` is given.
- *
- * @epic cognitive-cleo
- * @task T487
- */
-import { defineCommand } from 'citty';
-import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
-/**
- * cleo map — analyze codebase structure and return structured mapping.
- *
- * Dispatches to `admin.map` via the query (or mutate when `--store`) gateway.
- */
-export const mapCommand = defineCommand({
-    meta: { name: 'map', description: 'Analyze codebase structure and return structured mapping' },
-    args: {
-        store: {
-            type: 'boolean',
-            description: 'Store findings to brain.db',
-        },
-        focus: {
-            type: 'string',
-            description: 'Focus on one area: stack, architecture, structure, conventions, testing, integrations, concerns',
-        },
-    },
-    async run({ args }) {
-        const gateway = args.store ? 'mutate' : 'query';
-        const params = {};
-        if (args.focus)
-            params.focus = args.focus;
-        await dispatchFromCli(gateway, 'admin', 'map', params, { command: 'map' });
-    },
-});
-//# sourceMappingURL=map.js.map

package/dist/cli/commands/map.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"map.js","sourceRoot":"","sources":["../../../src/cli/commands/map.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,OAAO,CAAC;AACtC,OAAO,EAAE,eAAe,EAAE,MAAM,gCAAgC,CAAC;AAEjE;;;;GAIG;AACH,MAAM,CAAC,MAAM,UAAU,GAAG,aAAa,CAAC;IACtC,IAAI,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,WAAW,EAAE,0DAA0D,EAAE;IAC9F,IAAI,EAAE;QACJ,KAAK,EAAE;YACL,IAAI,EAAE,SAAS;YACf,WAAW,EAAE,4BAA4B;SAC1C;QACD,KAAK,EAAE;YACL,IAAI,EAAE,QAAQ;YACd,WAAW,EACT,iGAAiG;SACpG;KACF;IACD,KAAK,CAAC,GAAG,CAAC,EAAE,IAAI,EAAE;QAChB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,OAAO,CAAC;QAChD,MAAM,MAAM,GAA4B,EAAE,CAAC;QAC3C,IAAI,IAAI,CAAC,KAAK;YAAE,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC;QAC1C,MAAM,eAAe,CAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC;IAC7E,CAAC;CACF,CAAC,CAAC"}

package/dist/cli/commands/memory.d.ts

@@ -1,48 +0,0 @@
-/**
- * CLI memory commands for BRAIN pattern and learning memory.
- *
- * Subcommands:
- *   cleo memory store       — store a pattern or learning
- *   cleo memory find        — cross-table FTS5 search
- *   cleo memory stats       — pattern + learning statistics
- *   cleo memory observe     — save observation to brain.db
- *   cleo memory timeline    — chronological context around anchor
- *   cleo memory fetch       — full details for observation IDs
- *   cleo memory decision-find   — search decisions
- *   cleo memory decision-store  — store a decision
- *   cleo memory link        — link a brain entry to a task
- *   cleo memory trace       — BFS graph traversal
- *   cleo memory related     — 1-hop graph neighbours
- *   cleo memory context     — 360-degree node view
- *   cleo memory graph-stats — graph aggregate counts
- *   cleo memory graph-show  — get graph node + edges
- *   cleo memory graph-neighbors — get neighbour nodes
- *   cleo memory graph-add   — add node or edge
- *   cleo memory graph-remove — remove node or edge
- *   cleo memory reason-why  — causal trace through task deps
- *   cleo memory reason-similar — semantically similar entries
- *   cleo memory search-hybrid — hybrid FTS5/vector/graph search
- *   cleo memory code-links  — code ↔ memory connections
- *   cleo memory code-auto-link — auto-link brain to nexus
- *   cleo memory code-memories-for-code — memories referencing symbol
- *   cleo memory code-for-memory — code nodes for memory entry
- *   cleo memory consolidate — full consolidation pipeline
- *   cleo memory dream       — full dream cycle (STDP)
- *   cleo memory reflect     — LLM Observer + Reflector pipeline
- *   cleo memory dedup-scan  — report/merge duplicate entries
- *   cleo memory import      — migrate MEMORY.md files to brain.db
- *   cleo memory llm-status  — LLM backend resolution status
- *   cleo memory verify      — promote entry to verified=true
- *   cleo memory pending-verify — list unverified high-citation entries
- *   cleo memory tier        — tier management (stats|promote|demote)
- *
- * @task T4770 T614 T629
- * @epic T4763 T627
- */
-/**
- * Root memory command group — registers all BRAIN memory subcommands.
- *
- * Dispatches to `memory.*` registry operations.
- */
-export declare const memoryCommand: import("citty").CommandDef<import("citty").ArgsDef>;
-//# sourceMappingURL=memory.d.ts.map

package/dist/cli/commands/memory.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"memory.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/memory.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAwCG;AA2vFH;;;;GAIG;AACH,eAAO,MAAM,aAAa,qDAoDxB,CAAC"}