@cleocode/cleo 2026.4.59 → 2026.4.62

package/dist/cli/commands/backup.js

@@ -1,479 +0,0 @@
-/**
- * CLI backup command - add, list, export, and import backups.
- *
- * @task T4454
- * @task T4903
- * @task T306 — added --global flag to backup add; --scope filter to backup list (epic T299)
- * @task T359 — added `cleo backup export` subcommand (epic T311)
- * @task T361 — added `cleo backup import` subcommand with A/B restore and conflict report (epic T311)
- * @task T363 — added `backup inspect` subcommand (epic T311)
- */
-import crypto from 'node:crypto';
-import fs from 'node:fs';
-import path from 'node:path';
-import readline from 'node:readline';
-import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
-import { registerBackupInspectSubcommand } from './backup-inspect.js';
-// ---------------------------------------------------------------------------
-// Internal helper — passphrase prompt (TTY only; agents use env var)
-// ---------------------------------------------------------------------------
-/**
- * Prompt for a passphrase on stdin (TTY) without echoing input.
- *
- * Agents MUST set `CLEO_BACKUP_PASSPHRASE` instead of relying on this prompt
- * because they typically run without a TTY.
- *
- * @returns The trimmed passphrase string entered by the user.
- * @throws {Error} When stdin is not a TTY (non-interactive / agent context).
- *
- * @task T359
- * @epic T311
- */
-async function promptPassphrase() {
-    if (!process.stdin.isTTY) {
-        throw new Error('Cannot prompt for passphrase: stdin is not a TTY. ' +
-            'Set the CLEO_BACKUP_PASSPHRASE environment variable for non-interactive use.');
-    }
-    return new Promise((resolve) => {
-        process.stdout.write('Passphrase: ');
-        const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
-        rl.question('', (answer) => {
-            rl.close();
-            resolve(answer.trim());
-        });
-    });
-}
-export function registerBackupCommand(program) {
-    const backup = program
-        .command('backup')
-        .description('Add backup of todo files or list available backups');
-    backup
-        .command('add')
-        .alias('create')
-        .description('Add a new backup of all CLEO data files (backup create is an alias for backup add)')
-        .option('--destination <dir>', 'Backup destination directory')
-        .option('--global', 'Also snapshot global-tier databases (nexus.db)')
-        .action(async (opts) => {
-        await dispatchFromCli('mutate', 'admin', 'backup', {
-            type: 'snapshot',
-            note: opts['destination'] ? `destination:${opts['destination']}` : undefined,
-            includeGlobal: opts['global'] === true,
-        }, { command: 'backup' });
-    });
-    backup
-        .command('list')
-        .description('List available backups')
-        .option('--scope <scope>', 'Filter by backup scope: project, global, or all (default: all)', 'all')
-        .action(async (opts) => {
-        const scope = opts['scope'] || 'all';
-        await dispatchFromCli('query', 'admin', 'backup', {
-            type: 'list',
-            scope,
-        }, { command: 'backup' });
-    });
-    // ---------------------------------------------------------------------------
-    // cleo backup export <name> [--scope project|global|all] [--encrypt] [--out <path>]
-    // ---------------------------------------------------------------------------
-    /**
-     * Export project + global state to a portable .cleobundle.tar.gz archive.
-     *
-     * Delegates to {@link packBundle} from `@cleocode/core/internal`. When
-     * `--encrypt` is requested, the passphrase is read from the
-     * `CLEO_BACKUP_PASSPHRASE` environment variable (agent-friendly) or prompted
-     * interactively on a TTY.
-     *
-     * @task T359
-     * @epic T311
-     */
-    backup
-        .command('export <name>')
-        .description('Export project + global state to a portable .cleobundle.tar.gz')
-        .option('--scope <scope>', 'project | global | all', 'project')
-        .option('--encrypt', 'Encrypt bundle with passphrase (AES-256-GCM via scrypt)')
-        .option('--out <path>', 'Output bundle path (default: ./<name>[.enc].cleobundle.tar.gz)')
-        .action(async (name, opts) => {
-        const scope = opts.scope;
-        const { packBundle, getProjectRoot } = await import('@cleocode/core/internal');
-        const includesProject = scope === 'project' || scope === 'all';
-        const projectRoot = includesProject ? getProjectRoot() : undefined;
-        let passphrase;
-        if (opts.encrypt === true) {
-            passphrase = process.env['CLEO_BACKUP_PASSPHRASE'];
-            if (!passphrase) {
-                try {
-                    passphrase = await promptPassphrase();
-                }
-                catch (promptErr) {
-                    const msg = promptErr instanceof Error ? promptErr.message : String(promptErr);
-                    process.stderr.write(JSON.stringify({ success: false, error: { code: 6, message: msg } }) + '\n');
-                    process.exitCode = 6;
-                    return;
-                }
-            }
-            if (!passphrase) {
-                process.stderr.write(JSON.stringify({
-                    success: false,
-                    error: { code: 6, message: '--encrypt requires a passphrase' },
-                }) + '\n');
-                process.exitCode = 6;
-                return;
-            }
-        }
-        const encSuffix = opts.encrypt === true ? 'enc.' : '';
-        const outputPath = opts.out ?? `./${name}.${encSuffix}cleobundle.tar.gz`;
-        try {
-            const result = await packBundle({
-                scope,
-                projectRoot,
-                outputPath,
-                encrypt: opts.encrypt === true,
-                passphrase,
-                projectName: name,
-            });
-            process.stdout.write(JSON.stringify({
-                ok: true,
-                r: {
-                    bundlePath: result.bundlePath,
-                    size: result.size,
-                    fileCount: result.fileCount,
-                    scope,
-                    encrypted: opts.encrypt === true,
-                },
-            }) + '\n');
-            process.stderr.write(`Bundle written to ${result.bundlePath} (${result.size} bytes, ${result.fileCount} files)\n`);
-        }
-        catch (err) {
-            const message = err instanceof Error ? err.message : String(err);
-            process.stderr.write(JSON.stringify({ success: false, error: { code: 1, message } }) + '\n');
-            process.exitCode = 1;
-        }
-    });
-    // ---------------------------------------------------------------------------
-    // cleo backup import <bundle> [--force]
-    // ---------------------------------------------------------------------------
-    /**
-     * Import a .cleobundle.tar.gz into the current project (and/or global tier).
-     *
-     * Flow (spec §5.2):
-     *   1. Pre-check for existing live data files (unless --force).
-     *   2. Detect encryption from bundle header bytes.
-     *   3. Unpack + verify all 6 integrity layers via {@link unpackBundle}.
-     *   4. Copy DBs atomically to target paths; clear WAL sidecars.
-     *   5. Run A/B regenerate-and-compare for each JSON file.
-     *   6. Write .cleo/restore-conflicts.md.
-     *   7. Move raw imported JSON files to .cleo/restore-imported/.
-     *   8. Log completion.
-     *
-     * @task T361
-     * @epic T311
-     */
-    backup
-        .command('import <bundle>')
-        .description('Import a .cleobundle.tar.gz into the current project (and/or global tier)')
-        .option('--force', 'Overwrite existing live data at target without aborting')
-        .action(async (bundlePath, opts) => {
-        const core = await import('@cleocode/core/internal');
-        const projectRoot = core.getProjectRoot();
-        // -----------------------------------------------------------------------
-        // Step 1: Pre-check existing data (skip when --force)
-        // -----------------------------------------------------------------------
-        if (opts.force !== true) {
-            const existing = checkForExistingData(projectRoot, core.getCleoHome());
-            if (existing.length > 0) {
-                process.stderr.write(JSON.stringify({
-                    success: false,
-                    error: {
-                        code: 78,
-                        codeName: 'E_DATA_EXISTS',
-                        message: `Target has existing data: ${existing.join(', ')}. Use --force to overwrite.`,
-                    },
-                }) + '\n');
-                process.exitCode = 78;
-                return;
-            }
-        }
-        // -----------------------------------------------------------------------
-        // Step 2: Detect encryption from bundle header
-        // -----------------------------------------------------------------------
-        let passphrase;
-        if (isBundleEncrypted(bundlePath)) {
-            passphrase = process.env['CLEO_BACKUP_PASSPHRASE'];
-            if (!passphrase) {
-                try {
-                    passphrase = await promptPassphrase();
-                }
-                catch (promptErr) {
-                    const msg = promptErr instanceof Error ? promptErr.message : String(promptErr);
-                    process.stderr.write(JSON.stringify({ success: false, error: { code: 6, message: msg } }) + '\n');
-                    process.exitCode = 6;
-                    return;
-                }
-            }
-        }
-        // -----------------------------------------------------------------------
-        // Step 3: Unpack + verify (layers 1–6 delegated to unpackBundle)
-        // -----------------------------------------------------------------------
-        let result;
-        try {
-            result = await core.unpackBundle({ bundlePath, passphrase });
-        }
-        catch (err) {
-            if (err instanceof core.BundleError) {
-                process.stderr.write(JSON.stringify({
-                    success: false,
-                    error: { code: err.code, codeName: err.codeName, message: err.message },
-                }) + '\n');
-                process.exitCode = err.code;
-                return;
-            }
-            const message = err instanceof Error ? err.message : String(err);
-            process.stderr.write(JSON.stringify({ success: false, error: { code: 1, message } }) + '\n');
-            process.exitCode = 1;
-            return;
-        }
-        const { stagingDir, manifest, warnings } = result;
-        try {
-            // -----------------------------------------------------------------------
-            // Step 4: Atomic DB restore — copy + clear WAL sidecars
-            // -----------------------------------------------------------------------
-            for (const dbEntry of manifest.databases) {
-                const src = path.join(stagingDir, dbEntry.filename);
-                if (!fs.existsSync(src))
-                    continue;
-                const dst = resolveDbTarget(projectRoot, dbEntry.name, core.getCleoHome());
-                fs.mkdirSync(path.dirname(dst), { recursive: true });
-                // Atomic: write to tmp then rename
-                const tmpDst = `${dst}.import-tmp-${Date.now()}`;
-                fs.copyFileSync(src, tmpDst);
-                fs.renameSync(tmpDst, dst);
-                // Clear stale WAL sidecars
-                for (const sidecar of [`${dst}-wal`, `${dst}-shm`]) {
-                    if (fs.existsSync(sidecar)) {
-                        try {
-                            fs.unlinkSync(sidecar);
-                        }
-                        catch {
-                            // best-effort
-                        }
-                    }
-                }
-            }
-            // -----------------------------------------------------------------------
-            // Step 5: A/B regenerate-and-compare for JSON files
-            // -----------------------------------------------------------------------
-            const jsonReports = [];
-            for (const jsonEntry of manifest.json) {
-                const importedPath = path.join(stagingDir, jsonEntry.filename);
-                if (!fs.existsSync(importedPath))
-                    continue;
-                const imported = JSON.parse(fs.readFileSync(importedPath, 'utf-8'));
-                // manifest json filenames may include a path prefix (e.g. "json/config.json").
-                // Extract only the basename to match the FilenameForRestore constraint.
-                const basename = path.basename(jsonEntry.filename);
-                let localGenerated;
-                if (basename === 'config.json') {
-                    localGenerated = core.regenerateConfigJson(projectRoot).content;
-                }
-                else if (basename === 'project-info.json') {
-                    localGenerated = core.regenerateProjectInfoJson(projectRoot).content;
-                }
-                else {
-                    localGenerated = core.regenerateProjectContextJson(projectRoot).content;
-                }
-                const report = core.regenerateAndCompare({
-                    filename: basename,
-                    imported,
-                    localGenerated,
-                });
-                jsonReports.push(report);
-                // Write the applied merge to disk (always to .cleo/<basename>)
-                const targetPath = path.join(projectRoot, '.cleo', basename);
-                fs.mkdirSync(path.dirname(targetPath), { recursive: true });
-                fs.writeFileSync(targetPath, JSON.stringify(report.applied, null, 2), 'utf-8');
-            }
-            // -----------------------------------------------------------------------
-            // Step 6: Write .cleo/restore-conflicts.md
-            // -----------------------------------------------------------------------
-            const cleoVersion = core.getCleoVersion();
-            const conflictMd = core.buildConflictReport({
-                reports: jsonReports,
-                bundlePath,
-                sourceMachineFingerprint: manifest.backup.machineFingerprint,
-                targetMachineFingerprint: sha256OfMachineKey(core.getCleoHome()),
-                cleoVersion,
-                schemaWarnings: warnings.map((w) => ({
-                    db: w.db,
-                    bundleVersion: w.bundleVersion,
-                    localVersion: w.localVersion,
-                    severity: w.severity,
-                })),
-            });
-            core.writeConflictReport(projectRoot, conflictMd);
-            // -----------------------------------------------------------------------
-            // Step 7: Move raw imported JSON files to .cleo/restore-imported/
-            // -----------------------------------------------------------------------
-            const importedDir = path.join(projectRoot, '.cleo', 'restore-imported');
-            fs.mkdirSync(importedDir, { recursive: true });
-            for (const jsonEntry of manifest.json) {
-                const src = path.join(stagingDir, jsonEntry.filename);
-                if (!fs.existsSync(src))
-                    continue;
-                // Preserve the bundle-relative path inside restore-imported/ so that
-                // multiple imports with different prefixes do not collide.
-                const dst = path.join(importedDir, jsonEntry.filename);
-                fs.mkdirSync(path.dirname(dst), { recursive: true });
-                fs.copyFileSync(src, dst);
-            }
-            // -----------------------------------------------------------------------
-            // Step 8: Log completion
-            // -----------------------------------------------------------------------
-            const totalConflicts = jsonReports.reduce((sum, r) => sum + r.conflictCount, 0);
-            const conflictReportPath = path.join(projectRoot, '.cleo', 'restore-conflicts.md');
-            process.stdout.write(JSON.stringify({
-                ok: true,
-                r: {
-                    imported: bundlePath,
-                    dbsRestored: manifest.databases.length,
-                    jsonReports: jsonReports.map((r) => ({
-                        filename: r.filename,
-                        conflicts: r.conflictCount,
-                    })),
-                    totalConflicts,
-                    conflictReportPath,
-                },
-            }) + '\n');
-            if (totalConflicts > 0) {
-                process.stderr.write(`Restore complete with ${totalConflicts} unresolved conflict(s). ` +
-                    `Run 'cleo restore finalize' after resolving ${conflictReportPath}\n`);
-            }
-            else {
-                process.stderr.write(`Restore complete. Review ${conflictReportPath} for details.\n`);
-            }
-        }
-        catch (restoreErr) {
-            // Surface mid-restore errors with exit code 79 (E_RESTORE_PARTIAL)
-            const message = restoreErr instanceof Error ? restoreErr.message : String(restoreErr);
-            process.stderr.write(JSON.stringify({
-                success: false,
-                error: { code: 79, codeName: 'E_RESTORE_PARTIAL', message },
-            }) + '\n');
-            process.exitCode = 79;
-        }
-        finally {
-            // Always clean up staging dir regardless of success or failure
-            core.cleanupStaging(stagingDir);
-        }
-    });
-    // Inspect subcommand: stream-extract manifest.json only (T363)
-    registerBackupInspectSubcommand(backup);
-    // Default action: add backup
-    backup.action(async () => {
-        await dispatchFromCli('mutate', 'admin', 'backup', {}, { command: 'backup' });
-    });
-}
-// ---------------------------------------------------------------------------
-// T361 private helpers
-// ---------------------------------------------------------------------------
-/**
- * Returns the list of live CLEO data files that already exist at the target.
- *
- * Checks both project-tier files (`.cleo/<name>`) and global-tier databases
- * (`$XDG_DATA_HOME/cleo/<name>.db`). An empty array means the target is fresh.
- *
- * @param projectRoot - Absolute path to the current project root.
- * @param cleoHome    - Absolute path to the global CLEO home directory.
- * @returns Array of relative (project) or absolute (global) paths that exist.
- *
- * @task T361
- * @epic T311
- */
-function checkForExistingData(projectRoot, cleoHome) {
-    const projectFiles = [
-        '.cleo/tasks.db',
-        '.cleo/brain.db',
-        '.cleo/conduit.db',
-        '.cleo/config.json',
-        '.cleo/project-info.json',
-        '.cleo/project-context.json',
-    ];
-    const globalFiles = ['nexus.db', 'signaldock.db'];
-    const found = [];
-    for (const f of projectFiles) {
-        if (fs.existsSync(path.join(projectRoot, f)))
-            found.push(f);
-    }
-    for (const f of globalFiles) {
-        const abs = path.join(cleoHome, f);
-        if (fs.existsSync(abs))
-            found.push(abs);
-    }
-    return found;
-}
-/**
- * Resolve the absolute destination path for a named database.
- *
- * Global-tier databases (`nexus`, `signaldock`) are stored under `cleoHome`.
- * All other databases are stored under `<projectRoot>/.cleo/`.
- *
- * @param projectRoot - Absolute path to the current project root.
- * @param name        - Logical database name from the manifest (e.g. `"tasks"`).
- * @param cleoHome    - Absolute path to the global CLEO home directory.
- * @returns Absolute path for the destination `.db` file.
- *
- * @task T361
- * @epic T311
- */
-function resolveDbTarget(projectRoot, name, cleoHome) {
-    if (name === 'nexus' || name === 'signaldock') {
-        return path.join(cleoHome, `${name}.db`);
-    }
-    return path.join(projectRoot, '.cleo', `${name}.db`);
-}
-/**
- * Detect whether a bundle file is encrypted by inspecting its first 8 bytes.
- *
- * Reads the 8-byte magic header from the bundle file on disk and delegates to
- * the same detection logic used inside {@link unpackBundle}.
- *
- * Magic: `CLEOENC1` (ASCII) at offset 0 indicates an encrypted bundle.
- *
- * @param bundlePath - Absolute path to the bundle file.
- * @returns `true` when the bundle header matches the CLEOENC1 magic string.
- *
- * @task T361
- * @epic T311
- */
-function isBundleEncrypted(bundlePath) {
-    try {
-        const header = Buffer.alloc(8);
-        const fd = fs.openSync(bundlePath, 'r');
-        fs.readSync(fd, header, 0, 8, 0);
-        fs.closeSync(fd);
-        return header.toString('utf8') === 'CLEOENC1';
-    }
-    catch {
-        // If the file cannot be read, treat as unencrypted — unpackBundle will
-        // surface any real errors during the full verification pass.
-        return false;
-    }
-}
-/**
- * Compute SHA-256 of the local machine-key file at `<cleoHome>/machine-key`.
- *
- * Returns a placeholder hash of all zeros when the machine-key file does not
- * yet exist (fresh installation, no key generated).
- *
- * @param cleoHome - Absolute path to the global CLEO home directory.
- * @returns 64-character lowercase hex SHA-256 string.
- *
- * @task T361
- * @epic T311
- */
-function sha256OfMachineKey(cleoHome) {
-    const keyPath = path.join(cleoHome, 'machine-key');
-    if (!fs.existsSync(keyPath)) {
-        return '0'.repeat(64);
-    }
-    return crypto.createHash('sha256').update(fs.readFileSync(keyPath)).digest('hex');
-}
-//# sourceMappingURL=backup.js.map

package/dist/cli/commands/backup.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/blockers.d.ts

@@ -1,7 +0,0 @@
-/**
- * CLI blockers command - show blocked tasks and analyze blocking chains.
- * @task T4454
- */
-import type { ShimCommand as Command } from '../commander-shim.js';
-export declare function registerBlockersCommand(program: Command): void;
-//# sourceMappingURL=blockers.d.ts.map

package/dist/cli/commands/blockers.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"blockers.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/blockers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,KAAK,EAAE,WAAW,IAAI,OAAO,EAAE,MAAM,sBAAsB,CAAC;AAEnE,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAS9D"}

package/dist/cli/commands/blockers.js

@@ -1,16 +0,0 @@
-/**
- * CLI blockers command - show blocked tasks and analyze blocking chains.
- * @task T4454
- */
-import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
-export function registerBlockersCommand(program) {
-    program
-        .command('blockers')
-        .description('Show blocked tasks and analyze blocking chains')
-        .option('--analyze', 'Show full blocking chain analysis')
-        .action(async (opts) => {
-        const analyze = !!opts['analyze'];
-        await dispatchFromCli('query', 'tasks', 'blockers', { analyze }, { command: 'blockers' });
-    });
-}
-//# sourceMappingURL=blockers.js.map

package/dist/cli/commands/blockers.js.map

@@ -1 +0,0 @@
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package/dist/cli/commands/brain.d.ts

@@ -1,29 +0,0 @@
-/**
- * CLI command group: cleo brain
- *
- * Subcommands:
- *   cleo brain maintenance   — run temporal decay + consolidation + embedding backfill
- *
- * @task T143
- * @epic T134
- * @why Provide a single CLI entry point for brain optimization operations
- * @what Parent command group with maintenance subcommand and progress reporting
- */
-import type { ShimCommand as Command } from '../commander-shim.js';
-/**
- * Register the `cleo brain` command group.
- *
- * Registers a `brain` parent command and a `maintenance` subcommand that
- * combines temporal decay, memory consolidation, and embedding backfill
- * into one idempotent pass.
- *
- * @param program - The root CLI command to attach to
- *
- * @example
- * ```ts
- * registerBrainCommand(rootCommand);
- * // Adds: cleo brain maintenance [--skip-decay] [--skip-consolidation] [--skip-embeddings] [--json]
- * ```
- */
-export declare function registerBrainCommand(program: Command): void;
-//# sourceMappingURL=brain.d.ts.map

package/dist/cli/commands/brain.d.ts.map

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