@cleocode/cleo 2026.4.58 → 2026.4.59

package/dist/cli/commands/backup.js

@@ -0,0 +1,479 @@
+/**
+ * CLI backup command - add, list, export, and import backups.
+ *
+ * @task T4454
+ * @task T4903
+ * @task T306 — added --global flag to backup add; --scope filter to backup list (epic T299)
+ * @task T359 — added `cleo backup export` subcommand (epic T311)
+ * @task T361 — added `cleo backup import` subcommand with A/B restore and conflict report (epic T311)
+ * @task T363 — added `backup inspect` subcommand (epic T311)
+ */
+import crypto from 'node:crypto';
+import fs from 'node:fs';
+import path from 'node:path';
+import readline from 'node:readline';
+import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
+import { registerBackupInspectSubcommand } from './backup-inspect.js';
+// ---------------------------------------------------------------------------
+// Internal helper — passphrase prompt (TTY only; agents use env var)
+// ---------------------------------------------------------------------------
+/**
+ * Prompt for a passphrase on stdin (TTY) without echoing input.
+ *
+ * Agents MUST set `CLEO_BACKUP_PASSPHRASE` instead of relying on this prompt
+ * because they typically run without a TTY.
+ *
+ * @returns The trimmed passphrase string entered by the user.
+ * @throws {Error} When stdin is not a TTY (non-interactive / agent context).
+ *
+ * @task T359
+ * @epic T311
+ */
+async function promptPassphrase() {
+    if (!process.stdin.isTTY) {
+        throw new Error('Cannot prompt for passphrase: stdin is not a TTY. ' +
+            'Set the CLEO_BACKUP_PASSPHRASE environment variable for non-interactive use.');
+    }
+    return new Promise((resolve) => {
+        process.stdout.write('Passphrase: ');
+        const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+        rl.question('', (answer) => {
+            rl.close();
+            resolve(answer.trim());
+        });
+    });
+}
+export function registerBackupCommand(program) {
+    const backup = program
+        .command('backup')
+        .description('Add backup of todo files or list available backups');
+    backup
+        .command('add')
+        .alias('create')
+        .description('Add a new backup of all CLEO data files (backup create is an alias for backup add)')
+        .option('--destination <dir>', 'Backup destination directory')
+        .option('--global', 'Also snapshot global-tier databases (nexus.db)')
+        .action(async (opts) => {
+        await dispatchFromCli('mutate', 'admin', 'backup', {
+            type: 'snapshot',
+            note: opts['destination'] ? `destination:${opts['destination']}` : undefined,
+            includeGlobal: opts['global'] === true,
+        }, { command: 'backup' });
+    });
+    backup
+        .command('list')
+        .description('List available backups')
+        .option('--scope <scope>', 'Filter by backup scope: project, global, or all (default: all)', 'all')
+        .action(async (opts) => {
+        const scope = opts['scope'] || 'all';
+        await dispatchFromCli('query', 'admin', 'backup', {
+            type: 'list',
+            scope,
+        }, { command: 'backup' });
+    });
+    // ---------------------------------------------------------------------------
+    // cleo backup export <name> [--scope project|global|all] [--encrypt] [--out <path>]
+    // ---------------------------------------------------------------------------
+    /**
+     * Export project + global state to a portable .cleobundle.tar.gz archive.
+     *
+     * Delegates to {@link packBundle} from `@cleocode/core/internal`. When
+     * `--encrypt` is requested, the passphrase is read from the
+     * `CLEO_BACKUP_PASSPHRASE` environment variable (agent-friendly) or prompted
+     * interactively on a TTY.
+     *
+     * @task T359
+     * @epic T311
+     */
+    backup
+        .command('export <name>')
+        .description('Export project + global state to a portable .cleobundle.tar.gz')
+        .option('--scope <scope>', 'project | global | all', 'project')
+        .option('--encrypt', 'Encrypt bundle with passphrase (AES-256-GCM via scrypt)')
+        .option('--out <path>', 'Output bundle path (default: ./<name>[.enc].cleobundle.tar.gz)')
+        .action(async (name, opts) => {
+        const scope = opts.scope;
+        const { packBundle, getProjectRoot } = await import('@cleocode/core/internal');
+        const includesProject = scope === 'project' || scope === 'all';
+        const projectRoot = includesProject ? getProjectRoot() : undefined;
+        let passphrase;
+        if (opts.encrypt === true) {
+            passphrase = process.env['CLEO_BACKUP_PASSPHRASE'];
+            if (!passphrase) {
+                try {
+                    passphrase = await promptPassphrase();
+                }
+                catch (promptErr) {
+                    const msg = promptErr instanceof Error ? promptErr.message : String(promptErr);
+                    process.stderr.write(JSON.stringify({ success: false, error: { code: 6, message: msg } }) + '\n');
+                    process.exitCode = 6;
+                    return;
+                }
+            }
+            if (!passphrase) {
+                process.stderr.write(JSON.stringify({
+                    success: false,
+                    error: { code: 6, message: '--encrypt requires a passphrase' },
+                }) + '\n');
+                process.exitCode = 6;
+                return;
+            }
+        }
+        const encSuffix = opts.encrypt === true ? 'enc.' : '';
+        const outputPath = opts.out ?? `./${name}.${encSuffix}cleobundle.tar.gz`;
+        try {
+            const result = await packBundle({
+                scope,
+                projectRoot,
+                outputPath,
+                encrypt: opts.encrypt === true,
+                passphrase,
+                projectName: name,
+            });
+            process.stdout.write(JSON.stringify({
+                ok: true,
+                r: {
+                    bundlePath: result.bundlePath,
+                    size: result.size,
+                    fileCount: result.fileCount,
+                    scope,
+                    encrypted: opts.encrypt === true,
+                },
+            }) + '\n');
+            process.stderr.write(`Bundle written to ${result.bundlePath} (${result.size} bytes, ${result.fileCount} files)\n`);
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            process.stderr.write(JSON.stringify({ success: false, error: { code: 1, message } }) + '\n');
+            process.exitCode = 1;
+        }
+    });
+    // ---------------------------------------------------------------------------
+    // cleo backup import <bundle> [--force]
+    // ---------------------------------------------------------------------------
+    /**
+     * Import a .cleobundle.tar.gz into the current project (and/or global tier).
+     *
+     * Flow (spec §5.2):
+     *   1. Pre-check for existing live data files (unless --force).
+     *   2. Detect encryption from bundle header bytes.
+     *   3. Unpack + verify all 6 integrity layers via {@link unpackBundle}.
+     *   4. Copy DBs atomically to target paths; clear WAL sidecars.
+     *   5. Run A/B regenerate-and-compare for each JSON file.
+     *   6. Write .cleo/restore-conflicts.md.
+     *   7. Move raw imported JSON files to .cleo/restore-imported/.
+     *   8. Log completion.
+     *
+     * @task T361
+     * @epic T311
+     */
+    backup
+        .command('import <bundle>')
+        .description('Import a .cleobundle.tar.gz into the current project (and/or global tier)')
+        .option('--force', 'Overwrite existing live data at target without aborting')
+        .action(async (bundlePath, opts) => {
+        const core = await import('@cleocode/core/internal');
+        const projectRoot = core.getProjectRoot();
+        // -----------------------------------------------------------------------
+        // Step 1: Pre-check existing data (skip when --force)
+        // -----------------------------------------------------------------------
+        if (opts.force !== true) {
+            const existing = checkForExistingData(projectRoot, core.getCleoHome());
+            if (existing.length > 0) {
+                process.stderr.write(JSON.stringify({
+                    success: false,
+                    error: {
+                        code: 78,
+                        codeName: 'E_DATA_EXISTS',
+                        message: `Target has existing data: ${existing.join(', ')}. Use --force to overwrite.`,
+                    },
+                }) + '\n');
+                process.exitCode = 78;
+                return;
+            }
+        }
+        // -----------------------------------------------------------------------
+        // Step 2: Detect encryption from bundle header
+        // -----------------------------------------------------------------------
+        let passphrase;
+        if (isBundleEncrypted(bundlePath)) {
+            passphrase = process.env['CLEO_BACKUP_PASSPHRASE'];
+            if (!passphrase) {
+                try {
+                    passphrase = await promptPassphrase();
+                }
+                catch (promptErr) {
+                    const msg = promptErr instanceof Error ? promptErr.message : String(promptErr);
+                    process.stderr.write(JSON.stringify({ success: false, error: { code: 6, message: msg } }) + '\n');
+                    process.exitCode = 6;
+                    return;
+                }
+            }
+        }
+        // -----------------------------------------------------------------------
+        // Step 3: Unpack + verify (layers 1–6 delegated to unpackBundle)
+        // -----------------------------------------------------------------------
+        let result;
+        try {
+            result = await core.unpackBundle({ bundlePath, passphrase });
+        }
+        catch (err) {
+            if (err instanceof core.BundleError) {
+                process.stderr.write(JSON.stringify({
+                    success: false,
+                    error: { code: err.code, codeName: err.codeName, message: err.message },
+                }) + '\n');
+                process.exitCode = err.code;
+                return;
+            }
+            const message = err instanceof Error ? err.message : String(err);
+            process.stderr.write(JSON.stringify({ success: false, error: { code: 1, message } }) + '\n');
+            process.exitCode = 1;
+            return;
+        }
+        const { stagingDir, manifest, warnings } = result;
+        try {
+            // -----------------------------------------------------------------------
+            // Step 4: Atomic DB restore — copy + clear WAL sidecars
+            // -----------------------------------------------------------------------
+            for (const dbEntry of manifest.databases) {
+                const src = path.join(stagingDir, dbEntry.filename);
+                if (!fs.existsSync(src))
+                    continue;
+                const dst = resolveDbTarget(projectRoot, dbEntry.name, core.getCleoHome());
+                fs.mkdirSync(path.dirname(dst), { recursive: true });
+                // Atomic: write to tmp then rename
+                const tmpDst = `${dst}.import-tmp-${Date.now()}`;
+                fs.copyFileSync(src, tmpDst);
+                fs.renameSync(tmpDst, dst);
+                // Clear stale WAL sidecars
+                for (const sidecar of [`${dst}-wal`, `${dst}-shm`]) {
+                    if (fs.existsSync(sidecar)) {
+                        try {
+                            fs.unlinkSync(sidecar);
+                        }
+                        catch {
+                            // best-effort
+                        }
+                    }
+                }
+            }
+            // -----------------------------------------------------------------------
+            // Step 5: A/B regenerate-and-compare for JSON files
+            // -----------------------------------------------------------------------
+            const jsonReports = [];
+            for (const jsonEntry of manifest.json) {
+                const importedPath = path.join(stagingDir, jsonEntry.filename);
+                if (!fs.existsSync(importedPath))
+                    continue;
+                const imported = JSON.parse(fs.readFileSync(importedPath, 'utf-8'));
+                // manifest json filenames may include a path prefix (e.g. "json/config.json").
+                // Extract only the basename to match the FilenameForRestore constraint.
+                const basename = path.basename(jsonEntry.filename);
+                let localGenerated;
+                if (basename === 'config.json') {
+                    localGenerated = core.regenerateConfigJson(projectRoot).content;
+                }
+                else if (basename === 'project-info.json') {
+                    localGenerated = core.regenerateProjectInfoJson(projectRoot).content;
+                }
+                else {
+                    localGenerated = core.regenerateProjectContextJson(projectRoot).content;
+                }
+                const report = core.regenerateAndCompare({
+                    filename: basename,
+                    imported,
+                    localGenerated,
+                });
+                jsonReports.push(report);
+                // Write the applied merge to disk (always to .cleo/<basename>)
+                const targetPath = path.join(projectRoot, '.cleo', basename);
+                fs.mkdirSync(path.dirname(targetPath), { recursive: true });
+                fs.writeFileSync(targetPath, JSON.stringify(report.applied, null, 2), 'utf-8');
+            }
+            // -----------------------------------------------------------------------
+            // Step 6: Write .cleo/restore-conflicts.md
+            // -----------------------------------------------------------------------
+            const cleoVersion = core.getCleoVersion();
+            const conflictMd = core.buildConflictReport({
+                reports: jsonReports,
+                bundlePath,
+                sourceMachineFingerprint: manifest.backup.machineFingerprint,
+                targetMachineFingerprint: sha256OfMachineKey(core.getCleoHome()),
+                cleoVersion,
+                schemaWarnings: warnings.map((w) => ({
+                    db: w.db,
+                    bundleVersion: w.bundleVersion,
+                    localVersion: w.localVersion,
+                    severity: w.severity,
+                })),
+            });
+            core.writeConflictReport(projectRoot, conflictMd);
+            // -----------------------------------------------------------------------
+            // Step 7: Move raw imported JSON files to .cleo/restore-imported/
+            // -----------------------------------------------------------------------
+            const importedDir = path.join(projectRoot, '.cleo', 'restore-imported');
+            fs.mkdirSync(importedDir, { recursive: true });
+            for (const jsonEntry of manifest.json) {
+                const src = path.join(stagingDir, jsonEntry.filename);
+                if (!fs.existsSync(src))
+                    continue;
+                // Preserve the bundle-relative path inside restore-imported/ so that
+                // multiple imports with different prefixes do not collide.
+                const dst = path.join(importedDir, jsonEntry.filename);
+                fs.mkdirSync(path.dirname(dst), { recursive: true });
+                fs.copyFileSync(src, dst);
+            }
+            // -----------------------------------------------------------------------
+            // Step 8: Log completion
+            // -----------------------------------------------------------------------
+            const totalConflicts = jsonReports.reduce((sum, r) => sum + r.conflictCount, 0);
+            const conflictReportPath = path.join(projectRoot, '.cleo', 'restore-conflicts.md');
+            process.stdout.write(JSON.stringify({
+                ok: true,
+                r: {
+                    imported: bundlePath,
+                    dbsRestored: manifest.databases.length,
+                    jsonReports: jsonReports.map((r) => ({
+                        filename: r.filename,
+                        conflicts: r.conflictCount,
+                    })),
+                    totalConflicts,
+                    conflictReportPath,
+                },
+            }) + '\n');
+            if (totalConflicts > 0) {
+                process.stderr.write(`Restore complete with ${totalConflicts} unresolved conflict(s). ` +
+                    `Run 'cleo restore finalize' after resolving ${conflictReportPath}\n`);
+            }
+            else {
+                process.stderr.write(`Restore complete. Review ${conflictReportPath} for details.\n`);
+            }
+        }
+        catch (restoreErr) {
+            // Surface mid-restore errors with exit code 79 (E_RESTORE_PARTIAL)
+            const message = restoreErr instanceof Error ? restoreErr.message : String(restoreErr);
+            process.stderr.write(JSON.stringify({
+                success: false,
+                error: { code: 79, codeName: 'E_RESTORE_PARTIAL', message },
+            }) + '\n');
+            process.exitCode = 79;
+        }
+        finally {
+            // Always clean up staging dir regardless of success or failure
+            core.cleanupStaging(stagingDir);
+        }
+    });
+    // Inspect subcommand: stream-extract manifest.json only (T363)
+    registerBackupInspectSubcommand(backup);
+    // Default action: add backup
+    backup.action(async () => {
+        await dispatchFromCli('mutate', 'admin', 'backup', {}, { command: 'backup' });
+    });
+}
+// ---------------------------------------------------------------------------
+// T361 private helpers
+// ---------------------------------------------------------------------------
+/**
+ * Returns the list of live CLEO data files that already exist at the target.
+ *
+ * Checks both project-tier files (`.cleo/<name>`) and global-tier databases
+ * (`$XDG_DATA_HOME/cleo/<name>.db`). An empty array means the target is fresh.
+ *
+ * @param projectRoot - Absolute path to the current project root.
+ * @param cleoHome    - Absolute path to the global CLEO home directory.
+ * @returns Array of relative (project) or absolute (global) paths that exist.
+ *
+ * @task T361
+ * @epic T311
+ */
+function checkForExistingData(projectRoot, cleoHome) {
+    const projectFiles = [
+        '.cleo/tasks.db',
+        '.cleo/brain.db',
+        '.cleo/conduit.db',
+        '.cleo/config.json',
+        '.cleo/project-info.json',
+        '.cleo/project-context.json',
+    ];
+    const globalFiles = ['nexus.db', 'signaldock.db'];
+    const found = [];
+    for (const f of projectFiles) {
+        if (fs.existsSync(path.join(projectRoot, f)))
+            found.push(f);
+    }
+    for (const f of globalFiles) {
+        const abs = path.join(cleoHome, f);
+        if (fs.existsSync(abs))
+            found.push(abs);
+    }
+    return found;
+}
+/**
+ * Resolve the absolute destination path for a named database.
+ *
+ * Global-tier databases (`nexus`, `signaldock`) are stored under `cleoHome`.
+ * All other databases are stored under `<projectRoot>/.cleo/`.
+ *
+ * @param projectRoot - Absolute path to the current project root.
+ * @param name        - Logical database name from the manifest (e.g. `"tasks"`).
+ * @param cleoHome    - Absolute path to the global CLEO home directory.
+ * @returns Absolute path for the destination `.db` file.
+ *
+ * @task T361
+ * @epic T311
+ */
+function resolveDbTarget(projectRoot, name, cleoHome) {
+    if (name === 'nexus' || name === 'signaldock') {
+        return path.join(cleoHome, `${name}.db`);
+    }
+    return path.join(projectRoot, '.cleo', `${name}.db`);
+}
+/**
+ * Detect whether a bundle file is encrypted by inspecting its first 8 bytes.
+ *
+ * Reads the 8-byte magic header from the bundle file on disk and delegates to
+ * the same detection logic used inside {@link unpackBundle}.
+ *
+ * Magic: `CLEOENC1` (ASCII) at offset 0 indicates an encrypted bundle.
+ *
+ * @param bundlePath - Absolute path to the bundle file.
+ * @returns `true` when the bundle header matches the CLEOENC1 magic string.
+ *
+ * @task T361
+ * @epic T311
+ */
+function isBundleEncrypted(bundlePath) {
+    try {
+        const header = Buffer.alloc(8);
+        const fd = fs.openSync(bundlePath, 'r');
+        fs.readSync(fd, header, 0, 8, 0);
+        fs.closeSync(fd);
+        return header.toString('utf8') === 'CLEOENC1';
+    }
+    catch {
+        // If the file cannot be read, treat as unencrypted — unpackBundle will
+        // surface any real errors during the full verification pass.
+        return false;
+    }
+}
+/**
+ * Compute SHA-256 of the local machine-key file at `<cleoHome>/machine-key`.
+ *
+ * Returns a placeholder hash of all zeros when the machine-key file does not
+ * yet exist (fresh installation, no key generated).
+ *
+ * @param cleoHome - Absolute path to the global CLEO home directory.
+ * @returns 64-character lowercase hex SHA-256 string.
+ *
+ * @task T361
+ * @epic T311
+ */
+function sha256OfMachineKey(cleoHome) {
+    const keyPath = path.join(cleoHome, 'machine-key');
+    if (!fs.existsSync(keyPath)) {
+        return '0'.repeat(64);
+    }
+    return crypto.createHash('sha256').update(fs.readFileSync(keyPath)).digest('hex');
+}
+//# sourceMappingURL=backup.js.map

package/dist/cli/commands/backup.js.map

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package/dist/cli/commands/blockers.d.ts

@@ -0,0 +1,7 @@
+/**
+ * CLI blockers command - show blocked tasks and analyze blocking chains.
+ * @task T4454
+ */
+import type { ShimCommand as Command } from '../commander-shim.js';
+export declare function registerBlockersCommand(program: Command): void;
+//# sourceMappingURL=blockers.d.ts.map

package/dist/cli/commands/blockers.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"blockers.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/blockers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,KAAK,EAAE,WAAW,IAAI,OAAO,EAAE,MAAM,sBAAsB,CAAC;AAEnE,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAS9D"}

package/dist/cli/commands/blockers.js

@@ -0,0 +1,16 @@
+/**
+ * CLI blockers command - show blocked tasks and analyze blocking chains.
+ * @task T4454
+ */
+import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
+export function registerBlockersCommand(program) {
+    program
+        .command('blockers')
+        .description('Show blocked tasks and analyze blocking chains')
+        .option('--analyze', 'Show full blocking chain analysis')
+        .action(async (opts) => {
+        const analyze = !!opts['analyze'];
+        await dispatchFromCli('query', 'tasks', 'blockers', { analyze }, { command: 'blockers' });
+    });
+}
+//# sourceMappingURL=blockers.js.map

package/dist/cli/commands/blockers.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"blockers.js","sourceRoot":"","sources":["../../../src/cli/commands/blockers.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,eAAe,EAAE,MAAM,gCAAgC,CAAC;AAGjE,MAAM,UAAU,uBAAuB,CAAC,OAAgB;IACtD,OAAO;SACJ,OAAO,CAAC,UAAU,CAAC;SACnB,WAAW,CAAC,gDAAgD,CAAC;SAC7D,MAAM,CAAC,WAAW,EAAE,mCAAmC,CAAC;SACxD,MAAM,CAAC,KAAK,EAAE,IAA6B,EAAE,EAAE;QAC9C,MAAM,OAAO,GAAG,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAClC,MAAM,eAAe,CAAC,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE,OAAO,EAAE,UAAU,EAAE,CAAC,CAAC;IAC5F,CAAC,CAAC,CAAC;AACP,CAAC"}

package/dist/cli/commands/brain.d.ts

@@ -0,0 +1,29 @@
+/**
+ * CLI command group: cleo brain
+ *
+ * Subcommands:
+ *   cleo brain maintenance   — run temporal decay + consolidation + embedding backfill
+ *
+ * @task T143
+ * @epic T134
+ * @why Provide a single CLI entry point for brain optimization operations
+ * @what Parent command group with maintenance subcommand and progress reporting
+ */
+import type { ShimCommand as Command } from '../commander-shim.js';
+/**
+ * Register the `cleo brain` command group.
+ *
+ * Registers a `brain` parent command and a `maintenance` subcommand that
+ * combines temporal decay, memory consolidation, and embedding backfill
+ * into one idempotent pass.
+ *
+ * @param program - The root CLI command to attach to
+ *
+ * @example
+ * ```ts
+ * registerBrainCommand(rootCommand);
+ * // Adds: cleo brain maintenance [--skip-decay] [--skip-consolidation] [--skip-embeddings] [--json]
+ * ```
+ */
+export declare function registerBrainCommand(program: Command): void;
+//# sourceMappingURL=brain.d.ts.map

package/dist/cli/commands/brain.d.ts.map

@@ -0,0 +1 @@
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