@cleocode/cleo 2026.4.40 → 2026.4.42

package/dist/cli/commands/self-update.js

@@ -317,6 +317,40 @@ async function runPostUpdateDiagnostics(opts) {
         }
     }
     else {
+        // No storage migration needed, but still run structural upgrade to ensure
+        // all databases (brain.db, signaldock.db, conduit.db), adapters, schemas,
+        // memory-bridge.md, and other scaffold items are up to date.
+        if (!opts?.skipUpgrade) {
+            const result = await runUpgrade({ autoMigrate: false });
+            if (result.applied > 0 || result.errors.length > 0) {
+                // Show structured output of each action taken
+                if (result.actions.length > 0) {
+                    process.stderr.write('Post-update maintenance:\n');
+                    for (const action of result.actions) {
+                        if (action.status === 'skipped')
+                            continue;
+                        const icon = action.status === 'applied' ? '  ✓' : action.status === 'error' ? '  ✗' : '  -';
+                        process.stderr.write(`${icon} ${action.action}: ${action.details}\n`);
+                    }
+                    process.stderr.write('\n');
+                }
+                cliOutput({
+                    postUpdate: true,
+                    upgrade: {
+                        success: result.success,
+                        applied: result.applied,
+                        actions: result.actions,
+                        errors: result.errors.length > 0 ? result.errors : undefined,
+                    },
+                }, {
+                    command: 'self-update',
+                    message: result.success
+                        ? `Post-update maintenance complete (${result.applied} action(s) applied).`
+                        : 'Post-update maintenance had errors.',
+                });
+                return;
+            }
+        }
         cliOutput({
             postUpdate: true,
             storagePreflight: {

package/dist/cli/commands/self-update.js.map

@@ -1 +1 @@
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package/dist/cli/index.js

@@ -86280,7 +86280,12 @@ async function deployStarterBundle(cleoDir, created, warnings) {
       }
     }
   }
-  created.push("starter-bundle: team + agent .cant files deployed to .cleo/cant/");
+  const identitySrc = join106(starterBundleSrc, "CLEOOS-IDENTITY.md");
+  const identityDst = join106(cleoDir, "CLEOOS-IDENTITY.md");
+  if (existsSync107(identitySrc) && !existsSync107(identityDst)) {
+    await copyFile4(identitySrc, identityDst);
+  }
+  created.push("starter-bundle: team + agent .cant files + identity deployed to .cleo/");
 }
 var DIR_SYMLINK_TYPE2;
 var init_init = __esm({
@@ -100134,6 +100139,18 @@ async function runUpgrade(options = {}) {
       });
     } catch {
     }
+    try {
+      const { ensureConduitDb: ensureConduitDb2 } = await Promise.resolve().then(() => (init_conduit_sqlite(), conduit_sqlite_exports));
+      const cdResult = ensureConduitDb2(projectRootForMaint);
+      if (cdResult.action === "created") {
+        actions.push({
+          action: "ensure_conduit_db",
+          status: "applied",
+          details: "conduit.db created with full schema"
+        });
+      }
+    } catch {
+    }
     try {
       const { writeMemoryBridge: writeMemoryBridge2 } = await Promise.resolve().then(() => (init_memory_bridge(), memory_bridge_exports));
       const bridgeResult = await writeMemoryBridge2(projectRootForMaint);
@@ -100267,6 +100284,43 @@ async function runUpgrade(options = {}) {
       }
     } catch {
     }
+    try {
+      const { AdapterManager: AdapterManager2 } = await Promise.resolve().then(() => (init_adapters(), adapters_exports));
+      const mgr = AdapterManager2.getInstance(projectRootForMaint);
+      const manifests = mgr.discover();
+      if (manifests.length > 0) {
+        const detected = mgr.detectActive();
+        for (const adapterId of detected) {
+          try {
+            const adapter = await mgr.activate(adapterId);
+            const installResult = await adapter.install.install({
+              projectDir: projectRootForMaint
+            });
+            if (installResult.success) {
+              actions.push({
+                action: "adapter_install",
+                status: "applied",
+                details: `Adapter ${adapterId}: installed/updated`
+              });
+            }
+          } catch {
+          }
+        }
+      }
+    } catch {
+    }
+    try {
+      const { ensureCleoOsHub: ensureCleoOsHub2 } = await Promise.resolve().then(() => (init_scaffold(), scaffold_exports));
+      const hubResult = await ensureCleoOsHub2();
+      if (hubResult.action === "created") {
+        actions.push({
+          action: "cleoos_hub",
+          status: "applied",
+          details: hubResult.details ?? "CleoOS hub scaffolded"
+        });
+      }
+    } catch {
+    }
   } else {
     const { existsSync: fsExistsSync } = await import("node:fs");
     const { join: pathJoin } = await import("node:path");
@@ -100473,6 +100527,57 @@ async function diagnoseUpgrade(options = {}) {
             fix: "Run: cleo upgrade"
           });
         }
+        const brainColumnChecks = [
+          {
+            table: "brain_page_nodes",
+            columns: ["quality_score", "content_hash", "last_activity_at", "updated_at"],
+            task: "T528"
+          },
+          {
+            table: "brain_decisions",
+            columns: [
+              "quality_score",
+              "memory_tier",
+              "memory_type",
+              "verified",
+              "valid_at",
+              "invalid_at",
+              "source_confidence",
+              "citation_count"
+            ],
+            task: "T531/T549"
+          },
+          {
+            table: "brain_observations",
+            columns: ["quality_score", "memory_tier", "memory_type", "verified"],
+            task: "T531/T549"
+          }
+        ];
+        const allBrainColsMissing = [];
+        for (const { table, columns, task } of brainColumnChecks) {
+          const hasTable = nativeDb.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?").get(table);
+          if (!hasTable?.name) continue;
+          const cols = nativeDb.prepare(`PRAGMA table_info(${table})`).all();
+          const colNames = new Set(cols.map((c) => c.name));
+          const missing = columns.filter((c) => !colNames.has(c));
+          if (missing.length > 0) {
+            allBrainColsMissing.push(`${table}: ${missing.join(", ")} (${task})`);
+          }
+        }
+        if (allBrainColsMissing.length > 0) {
+          findings.push({
+            check: "brain.db.schema_columns",
+            status: "error",
+            details: `Missing brain schema columns: ${allBrainColsMissing.join("; ")}`,
+            fix: "Run: cleo upgrade (will add missing columns automatically)"
+          });
+        } else {
+          findings.push({
+            check: "brain.db.schema_columns",
+            status: "ok",
+            details: "All T528/T531/T549 brain schema columns present"
+          });
+        }
       } else {
         findings.push({
           check: "brain.db.connection",
@@ -100491,7 +100596,80 @@ async function diagnoseUpgrade(options = {}) {
     findings.push({
       check: "brain.db",
       status: "warning",
-      details: "brain.db not found (will be created on first use)"
+      details: "brain.db not found (will be created on first use)",
+      fix: "Run: cleo upgrade"
+    });
+  }
+  const signaldockDbPath = join115(cleoDir, "signaldock.db");
+  if (existsSync118(signaldockDbPath)) {
+    findings.push({
+      check: "signaldock.db",
+      status: "ok",
+      details: "signaldock.db exists"
+    });
+  } else {
+    findings.push({
+      check: "signaldock.db",
+      status: "warning",
+      details: "signaldock.db not found",
+      fix: "Run: cleo upgrade"
+    });
+  }
+  const conduitDbPath = join115(cleoDir, "conduit.db");
+  if (existsSync118(conduitDbPath)) {
+    findings.push({
+      check: "conduit.db",
+      status: "ok",
+      details: "conduit.db exists"
+    });
+  } else {
+    findings.push({
+      check: "conduit.db",
+      status: "warning",
+      details: "conduit.db not found",
+      fix: "Run: cleo upgrade"
+    });
+  }
+  const memoryBridgePath = join115(cleoDir, "memory-bridge.md");
+  if (existsSync118(memoryBridgePath)) {
+    try {
+      const content = readFileSync86(memoryBridgePath, "utf-8");
+      const hasAutoGenMarker = content.includes("Auto-generated");
+      const hasGarbage = content.includes("undefined") && content.length < 100;
+      if (hasGarbage) {
+        findings.push({
+          check: "memory-bridge.md",
+          status: "error",
+          details: "memory-bridge.md contains garbage content",
+          fix: "Run: cleo upgrade (will regenerate)"
+        });
+      } else if (hasAutoGenMarker) {
+        findings.push({
+          check: "memory-bridge.md",
+          status: "ok",
+          details: "memory-bridge.md exists and has valid content"
+        });
+      } else {
+        findings.push({
+          check: "memory-bridge.md",
+          status: "warning",
+          details: "memory-bridge.md exists but may be stale (no auto-generated marker)",
+          fix: "Run: cleo upgrade (will regenerate)"
+        });
+      }
+    } catch {
+      findings.push({
+        check: "memory-bridge.md",
+        status: "warning",
+        details: "memory-bridge.md exists but could not be read"
+      });
+    }
+  } else {
+    findings.push({
+      check: "memory-bridge.md",
+      status: "warning",
+      details: "memory-bridge.md not found",
+      fix: "Run: cleo upgrade (will regenerate)"
     });
   }
   const okCount = findings.filter((f2) => f2.status === "ok").length;
@@ -140986,6 +141164,37 @@ async function runPostUpdateDiagnostics(opts) {
       );
     }
   } else {
+    if (!opts?.skipUpgrade) {
+      const result = await runUpgrade({ autoMigrate: false });
+      if (result.applied > 0 || result.errors.length > 0) {
+        if (result.actions.length > 0) {
+          process.stderr.write("Post-update maintenance:\n");
+          for (const action of result.actions) {
+            if (action.status === "skipped") continue;
+            const icon = action.status === "applied" ? "  \u2713" : action.status === "error" ? "  \u2717" : "  -";
+            process.stderr.write(`${icon} ${action.action}: ${action.details}
+`);
+          }
+          process.stderr.write("\n");
+        }
+        cliOutput(
+          {
+            postUpdate: true,
+            upgrade: {
+              success: result.success,
+              applied: result.applied,
+              actions: result.actions,
+              errors: result.errors.length > 0 ? result.errors : void 0
+            }
+          },
+          {
+            command: "self-update",
+            message: result.success ? `Post-update maintenance complete (${result.applied} action(s) applied).` : "Post-update maintenance had errors."
+          }
+        );
+        return;
+      }
+    }
     cliOutput(
       {
         postUpdate: true,