@cleocode/cleo 2026.4.158 → 2026.5.0

package/dist/cli/commands/brain.d.ts

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+/**
+ * CLI command group: cleo brain
+ *
+ * Subcommands:
+ *   cleo brain maintenance   — run temporal decay + consolidation + embedding backfill
+ *   cleo brain backfill      — back-fill brain graph nodes/edges from typed tables
+ *   cleo brain purge         — purge noise entries from brain.db
+ *   cleo brain plasticity    — STDP plasticity operations
+ *   cleo brain quality       — memory quality metrics
+ *   cleo brain export        — export brain graph as GEXF or JSON
+ *
+ * @task T143
+ * @epic T134
+ * @why Provide a single CLI entry point for brain optimization operations
+ * @what Parent command group with subcommands and progress reporting
+ */
+/**
+ * Root brain command group — registers all brain optimization subcommands.
+ *
+ * Provides maintenance, backfill, purge, plasticity, quality, and export
+ * subcommands for brain.db operations.
+ *
+ * @task T143
+ * @epic T134
+ *
+ * @example
+ * ```ts
+ * // Adds: cleo brain maintenance [--skip-decay] [--skip-consolidation] ...
+ * //       cleo brain backfill [--json]
+ * //       cleo brain purge [--json]
+ * //       cleo brain plasticity stats [--limit <n>] [--json]
+ * //       cleo brain quality [--json]
+ * //       cleo brain export [--format gexf|json] [--output <file>]
+ * ```
+ */
+export declare const brainCommand: import("citty").CommandDef<import("citty").ArgsDef>;
+//# sourceMappingURL=brain.d.ts.map

package/dist/cli/commands/brain.d.ts.map

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+{"version":3,"file":"brain.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/brain.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAsdH;;;;;;;;;;;;;;;;;;GAkBG;AACH,eAAO,MAAM,YAAY,qDAevB,CAAC"}

package/dist/cli/commands/brain.js

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+/**
+ * CLI command group: cleo brain
+ *
+ * Subcommands:
+ *   cleo brain maintenance   — run temporal decay + consolidation + embedding backfill
+ *   cleo brain backfill      — back-fill brain graph nodes/edges from typed tables
+ *   cleo brain purge         — purge noise entries from brain.db
+ *   cleo brain plasticity    — STDP plasticity operations
+ *   cleo brain quality       — memory quality metrics
+ *   cleo brain export        — export brain graph as GEXF or JSON
+ *
+ * @task T143
+ * @epic T134
+ * @why Provide a single CLI entry point for brain optimization operations
+ * @what Parent command group with subcommands and progress reporting
+ */
+import { backfillBrainGraph, exportBrainAsGexf, exportBrainAsJson, getMemoryQualityReport, getPlasticityStats, getProjectRoot, purgeBrainNoise, runBrainMaintenance, } from '@cleocode/core/internal';
+import { defineCommand, showUsage } from 'citty';
+/** cleo brain maintenance — temporal decay, consolidation, and embedding backfill */
+const maintenanceCommand = defineCommand({
+    meta: {
+        name: 'maintenance',
+        description: 'Run brain maintenance: temporal decay, consolidation, and embedding backfill',
+    },
+    args: {
+        'skip-decay': {
+            type: 'boolean',
+            description: 'Skip the temporal decay step (confidence reduction on stale learnings)',
+        },
+        'skip-consolidation': {
+            type: 'boolean',
+            description: 'Skip the memory consolidation step (merging old observations)',
+        },
+        'skip-reconciliation': {
+            type: 'boolean',
+            description: 'Skip the cross-DB orphaned reference reconciliation step',
+        },
+        'skip-tier-promotion': {
+            type: 'boolean',
+            description: 'Skip the tier promotion step (short\u2192medium, medium\u2192long promotion)',
+        },
+        'skip-embeddings': {
+            type: 'boolean',
+            description: 'Skip the embedding backfill step (vector generation for observations)',
+        },
+        json: { type: 'boolean', description: 'Output results as JSON' },
+    },
+    async run({ args }) {
+        const root = getProjectRoot();
+        const isJson = !!args.json;
+        if (!isJson) {
+            console.log('Running brain maintenance...');
+        }
+        try {
+            const result = await runBrainMaintenance(root, {
+                skipDecay: !!args['skip-decay'],
+                skipConsolidation: !!args['skip-consolidation'],
+                skipReconciliation: !!args['skip-reconciliation'],
+                skipTierPromotion: !!args['skip-tier-promotion'],
+                skipEmbeddings: !!args['skip-embeddings'],
+                onProgress: isJson
+                    ? undefined
+                    : (step, current, total) => {
+                        if (step === 'embeddings' && total > 0) {
+                            if (process.stdout.isTTY) {
+                                process.stdout.clearLine(0);
+                                process.stdout.cursorTo(0);
+                                process.stdout.write(`  [embeddings] ${current}/${total}...`);
+                            }
+                            else if (current === 1 || current === total) {
+                                console.log(`  [embeddings] ${current}/${total}...`);
+                            }
+                        }
+                        else if (current === 0) {
+                            console.log(`  [${step}] starting...`);
+                        }
+                        else if (current === total && total > 0) {
+                            if (step === 'embeddings' && process.stdout.isTTY) {
+                                process.stdout.write('\n');
+                            }
+                            console.log(`  [${step}] done`);
+                        }
+                    },
+            });
+            if (isJson) {
+                console.log(JSON.stringify(result, null, 2));
+                return;
+            }
+            console.log('\nMaintenance complete.');
+            console.log(`  Duration: ${result.duration}ms`);
+            if (!args['skip-decay']) {
+                console.log(`  Decay:         ${result.decay.affected} learning(s) updated`);
+            }
+            if (!args['skip-consolidation']) {
+                console.log(`  Consolidation: ${result.consolidation.merged} merged, ${result.consolidation.removed} archived`);
+            }
+            if (!args['skip-tier-promotion']) {
+                console.log(`  Tier promotion: ${result.tierPromotion.promoted} promoted, ${result.tierPromotion.evicted} evicted`);
+            }
+            if (!args['skip-reconciliation']) {
+                console.log(`  Reconcile:     ${result.reconciliation.decisionsFixed} decisions, ${result.reconciliation.observationsFixed} observations, ${result.reconciliation.linksRemoved} links`);
+            }
+            if (!args['skip-embeddings']) {
+                console.log(`  Embeddings:    ${result.embeddings.processed} processed, ${result.embeddings.skipped} skipped, ${result.embeddings.errors} errors`);
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            if (isJson) {
+                console.log(JSON.stringify({ error: message }));
+            }
+            else {
+                console.error(`Brain maintenance failed: ${message}`);
+            }
+            process.exit(1);
+        }
+    },
+});
+/** cleo brain backfill — back-fill brain graph from surviving typed table rows */
+const backfillCommand = defineCommand({
+    meta: {
+        name: 'backfill',
+        description: 'Back-fill brain_page_nodes and brain_page_edges from all surviving typed table rows (decisions, patterns, learnings, observations, sticky notes). Safe to re-run — duplicates are silently skipped.',
+    },
+    args: {
+        json: { type: 'boolean', description: 'Output results as JSON' },
+    },
+    async run({ args }) {
+        const root = getProjectRoot();
+        const isJson = !!args.json;
+        if (!isJson) {
+            console.log('Running brain graph back-fill...');
+        }
+        try {
+            const result = await backfillBrainGraph(root);
+            if (isJson) {
+                console.log(JSON.stringify({
+                    success: true,
+                    data: result,
+                    meta: { operation: 'brain.backfill', timestamp: new Date().toISOString() },
+                }, null, 2));
+                return;
+            }
+            console.log('\nBack-fill complete.');
+            console.log(`  Before: ${result.before.nodes} nodes, ${result.before.edges} edges`);
+            console.log(`  Source: ${result.before.decisions} decisions, ${result.before.patterns} patterns, ${result.before.learnings} learnings, ${result.before.observations} observations, ${result.before.stickyNotes} stickies`);
+            console.log(`  Nodes inserted: ${result.nodesInserted} (including ${result.stubsCreated} stub nodes)`);
+            console.log(`  Edges inserted: ${result.edgesInserted}`);
+            console.log(`  After:  ${result.after.nodes} nodes, ${result.after.edges} edges`);
+            console.log('\n  By type:');
+            for (const [type, count] of Object.entries(result.byType)) {
+                console.log(`    ${type}: ${count}`);
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            if (isJson) {
+                console.log(JSON.stringify({ success: false, error: message }));
+            }
+            else {
+                console.error(`Brain backfill failed: ${message}`);
+            }
+            process.exit(1);
+        }
+    },
+});
+/** cleo brain purge — purge noise entries from brain.db */
+const purgeCommand = defineCommand({
+    meta: {
+        name: 'purge',
+        description: 'Purge noise entries from brain.db — removes duplicate patterns, all learnings, test decisions, and task-lifecycle observations. TAKE A BACKUP FIRST.',
+    },
+    args: {
+        json: { type: 'boolean', description: 'Output results as JSON' },
+    },
+    async run({ args }) {
+        const root = getProjectRoot();
+        const isJson = !!args.json;
+        if (!isJson) {
+            console.log('Running brain noise purge...');
+            console.log('Safety check: verifying D-mntpeeer exists before any deletes...');
+        }
+        try {
+            const result = await purgeBrainNoise(root);
+            if (isJson) {
+                console.log(JSON.stringify({
+                    success: true,
+                    data: result,
+                    meta: { operation: 'brain.purge', timestamp: new Date().toISOString() },
+                }, null, 2));
+                return;
+            }
+            console.log('\nPurge complete.');
+            console.log(`  Patterns deleted:     ${result.patternsDeleted}`);
+            console.log(`  Learnings deleted:    ${result.learningsDeleted}`);
+            console.log(`  Decisions deleted:    ${result.decisionsDeleted}`);
+            console.log(`  Observations deleted: ${result.observationsDeleted}`);
+            console.log('\nPost-purge counts:');
+            console.log(`  Patterns:     ${result.after.patterns}`);
+            console.log(`  Learnings:    ${result.after.learnings}`);
+            console.log(`  Decisions:    ${result.after.decisions}`);
+            console.log(`  Observations: ${result.after.observations}`);
+            console.log(`  FTS5 rebuilt: ${result.fts5Rebuilt}`);
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            if (isJson) {
+                console.log(JSON.stringify({ success: false, error: message }));
+            }
+            else {
+                console.error(`Brain purge failed: ${message}`);
+            }
+            process.exit(1);
+        }
+    },
+});
+/** cleo brain plasticity stats — show recent STDP plasticity events */
+const plasticityStatsCommand = defineCommand({
+    meta: {
+        name: 'stats',
+        description: 'Show recent STDP plasticity events: LTP/LTD counts, net weight delta, and most recent events.',
+    },
+    args: {
+        limit: {
+            type: 'string',
+            description: 'Maximum recent events to show (default 20)',
+            default: '20',
+        },
+        json: { type: 'boolean', description: 'Output results as JSON' },
+    },
+    async run({ args }) {
+        const root = getProjectRoot();
+        const isJson = !!args.json;
+        const limit = Number.parseInt(args.limit, 10) || 20;
+        try {
+            const stats = await getPlasticityStats(root, limit);
+            if (isJson) {
+                console.log(JSON.stringify({
+                    success: true,
+                    data: stats,
+                    meta: { operation: 'brain.plasticity.stats', timestamp: new Date().toISOString() },
+                }, null, 2));
+                return;
+            }
+            console.log('\nBrain Plasticity Stats (STDP)');
+            console.log('\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550');
+            console.log(`  Total events:       ${stats.totalEvents}`);
+            console.log(`  LTP (potentiation): ${stats.ltpCount}`);
+            console.log(`  LTD (depression):   ${stats.ltdCount}`);
+            const sign = stats.netDeltaW >= 0 ? '+' : '';
+            console.log(`  Net \u0394w:             ${sign}${stats.netDeltaW.toFixed(4)}`);
+            console.log(`  Last event:         ${stats.lastEventAt ?? '(none)'}`);
+            if (stats.recentEvents.length > 0) {
+                console.log(`\nRecent Events (newest first, limit=${limit})`);
+                for (const ev of stats.recentEvents) {
+                    const evSign = ev.deltaW >= 0 ? '+' : '';
+                    const src = ev.sourceNode.slice(0, 30).padEnd(30);
+                    const tgt = ev.targetNode.slice(0, 30).padEnd(30);
+                    console.log(`  [${ev.kind.toUpperCase()}] ${src} \u2192 ${tgt}  \u0394w=${evSign}${ev.deltaW.toFixed(4)}  ${ev.timestamp}`);
+                }
+            }
+            else {
+                console.log('\n  No plasticity events recorded yet.');
+                console.log('  Run `cleo brain maintenance` or `cleo session end` to trigger STDP.');
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            if (isJson) {
+                console.log(JSON.stringify({ success: false, error: message }));
+            }
+            else {
+                console.error(`Brain plasticity stats failed: ${message}`);
+            }
+            process.exit(1);
+        }
+    },
+});
+/** cleo brain plasticity — STDP timing-dependent plasticity operations */
+const plasticityCommand = defineCommand({
+    meta: {
+        name: 'plasticity',
+        description: 'STDP timing-dependent plasticity operations (T626 phase 5)',
+    },
+    subCommands: {
+        stats: plasticityStatsCommand,
+    },
+});
+/** cleo brain quality — memory quality metrics */
+const qualityCommand = defineCommand({
+    meta: {
+        name: 'quality',
+        description: 'Show memory quality metrics: retrieval rates, top/never-retrieved entries, quality distribution, and noise ratio.',
+    },
+    args: {
+        json: { type: 'boolean', description: 'Output results as JSON' },
+    },
+    async run({ args }) {
+        const root = getProjectRoot();
+        const isJson = !!args.json;
+        try {
+            const report = await getMemoryQualityReport(root);
+            if (isJson) {
+                console.log(JSON.stringify({
+                    success: true,
+                    data: report,
+                    meta: { operation: 'brain.quality', timestamp: new Date().toISOString() },
+                }, null, 2));
+                return;
+            }
+            console.log('\nBrain Memory Quality Report');
+            console.log('\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550\u2550');
+            console.log(`  Total retrievals:       ${report.totalRetrievals}`);
+            console.log(`  Unique entries hit:     ${report.uniqueEntriesRetrieved}`);
+            console.log(`  Usage rate:             ${(report.usageRate * 100).toFixed(1)}%`);
+            console.log(`  Noise ratio:            ${(report.noiseRatio * 100).toFixed(1)}%`);
+            console.log('\nQuality Distribution');
+            console.log(`  Low  (<0.3):    ${report.qualityDistribution.low}`);
+            console.log(`  Med  (0.3-0.6): ${report.qualityDistribution.medium}`);
+            console.log(`  High (>0.6):    ${report.qualityDistribution.high}`);
+            console.log('\nTier Distribution');
+            console.log(`  Short:   ${report.tierDistribution.short}`);
+            console.log(`  Medium:  ${report.tierDistribution.medium}`);
+            console.log(`  Long:    ${report.tierDistribution.long}`);
+            if (report.tierDistribution.unknown > 0) {
+                console.log(`  Unknown: ${report.tierDistribution.unknown}`);
+            }
+            if (report.topRetrieved.length > 0) {
+                console.log('\nTop 10 Most Retrieved');
+                for (const e of report.topRetrieved) {
+                    console.log(`  [${e.citationCount}x] ${e.id}  ${e.title.slice(0, 60)}`);
+                }
+            }
+            if (report.neverRetrieved.length > 0) {
+                console.log('\nNever Retrieved (pruning candidates)');
+                for (const e of report.neverRetrieved) {
+                    console.log(`  q=${e.qualityScore.toFixed(2)}  ${e.id}  ${e.title.slice(0, 60)}`);
+                }
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            if (isJson) {
+                console.log(JSON.stringify({ success: false, error: message }));
+            }
+            else {
+                console.error(`Brain quality report failed: ${message}`);
+            }
+            process.exit(1);
+        }
+    },
+});
+/** cleo brain export — export brain graph as GEXF or JSON */
+const exportCommand = defineCommand({
+    meta: {
+        name: 'export',
+        description: 'Export brain graph as GEXF (Gephi) or JSON format',
+    },
+    args: {
+        format: {
+            type: 'string',
+            description: 'Export format: gexf (Gephi standard) or json (flat arrays)',
+            default: 'gexf',
+        },
+        output: {
+            type: 'string',
+            description: 'Write to file instead of stdout (optional)',
+        },
+    },
+    async run({ args }) {
+        const root = getProjectRoot();
+        const format = args.format ?? 'gexf';
+        if (format !== 'gexf' && format !== 'json') {
+            console.error(`Invalid format: ${format}. Use 'gexf' or 'json'.`);
+            process.exit(1);
+        }
+        try {
+            let content;
+            let nodeCount;
+            let edgeCount;
+            if (format === 'gexf') {
+                const result = await exportBrainAsGexf(root);
+                content = result.content;
+                nodeCount = result.nodeCount;
+                edgeCount = result.edgeCount;
+            }
+            else {
+                const result = await exportBrainAsJson(root);
+                content = JSON.stringify(result, null, 2);
+                nodeCount = result.nodeCount;
+                edgeCount = result.edgeCount;
+            }
+            if (args.output) {
+                const fs = await import('node:fs');
+                fs.writeFileSync(args.output, content, 'utf-8');
+                console.log(`Exported to ${args.output}: ${nodeCount} nodes, ${edgeCount} edges (${format.toUpperCase()})`);
+            }
+            else {
+                console.log(content);
+            }
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            console.error(`Brain export failed: ${message}`);
+            process.exit(1);
+        }
+    },
+});
+/**
+ * Root brain command group — registers all brain optimization subcommands.
+ *
+ * Provides maintenance, backfill, purge, plasticity, quality, and export
+ * subcommands for brain.db operations.
+ *
+ * @task T143
+ * @epic T134
+ *
+ * @example
+ * ```ts
+ * // Adds: cleo brain maintenance [--skip-decay] [--skip-consolidation] ...
+ * //       cleo brain backfill [--json]
+ * //       cleo brain purge [--json]
+ * //       cleo brain plasticity stats [--limit <n>] [--json]
+ * //       cleo brain quality [--json]
+ * //       cleo brain export [--format gexf|json] [--output <file>]
+ * ```
+ */
+export const brainCommand = defineCommand({
+    meta: { name: 'brain', description: 'Brain memory optimization operations' },
+    subCommands: {
+        maintenance: maintenanceCommand,
+        backfill: backfillCommand,
+        purge: purgeCommand,
+        plasticity: plasticityCommand,
+        quality: qualityCommand,
+        export: exportCommand,
+    },
+    async run({ cmd, rawArgs }) {
+        const firstArg = rawArgs?.find((a) => !a.startsWith('-'));
+        if (firstArg && cmd.subCommands && firstArg in cmd.subCommands)
+            return;
+        await showUsage(cmd);
+    },
+});
+//# sourceMappingURL=brain.js.map

package/dist/cli/commands/brain.js.map

@@ -0,0 +1 @@
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package/dist/cli/commands/briefing.d.ts

@@ -0,0 +1,52 @@
+/**
+ * CLI briefing command — show composite session-start context.
+ *
+ * Aggregates session-start context from multiple sources:
+ * - Last session handoff
+ * - Current focus
+ * - Top-N next tasks
+ * - Open bugs
+ * - Blocked tasks
+ * - Active epics
+ * - Pipeline stage
+ *
+ * @task T4916
+ * @epic T4914
+ */
+/**
+ * Root briefing command — show composite session-start context.
+ *
+ * Dispatches to `session.briefing.show` with optional scope and result-count
+ * limits. Use at session start to restore context quickly.
+ *
+ * @task T4916
+ * @epic T4914
+ */
+export declare const briefingCommand: import("citty").CommandDef<{
+    readonly scope: {
+        readonly type: "string";
+        readonly description: "Scope filter (global or epic:T###)";
+        readonly alias: "s";
+    };
+    readonly 'max-next': {
+        readonly type: "string";
+        readonly description: "Maximum next tasks to show";
+        readonly default: "5";
+    };
+    readonly 'max-bugs': {
+        readonly type: "string";
+        readonly description: "Maximum bugs to show";
+        readonly default: "10";
+    };
+    readonly 'max-blocked': {
+        readonly type: "string";
+        readonly description: "Maximum blocked tasks to show";
+        readonly default: "10";
+    };
+    readonly 'max-epics': {
+        readonly type: "string";
+        readonly description: "Maximum active epics to show";
+        readonly default: "5";
+    };
+}>;
+//# sourceMappingURL=briefing.d.ts.map

package/dist/cli/commands/briefing.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"briefing.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/briefing.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH;;;;;;;;GAQG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;EAgD1B,CAAC"}

package/dist/cli/commands/briefing.js

@@ -0,0 +1,69 @@
+/**
+ * CLI briefing command — show composite session-start context.
+ *
+ * Aggregates session-start context from multiple sources:
+ * - Last session handoff
+ * - Current focus
+ * - Top-N next tasks
+ * - Open bugs
+ * - Blocked tasks
+ * - Active epics
+ * - Pipeline stage
+ *
+ * @task T4916
+ * @epic T4914
+ */
+import { defineCommand } from 'citty';
+import { dispatchFromCli } from '../../dispatch/adapters/cli.js';
+/**
+ * Root briefing command — show composite session-start context.
+ *
+ * Dispatches to `session.briefing.show` with optional scope and result-count
+ * limits. Use at session start to restore context quickly.
+ *
+ * @task T4916
+ * @epic T4914
+ */
+export const briefingCommand = defineCommand({
+    meta: {
+        name: 'briefing',
+        description: 'Session resume context: last handoff, current task, next tasks, bugs, blockers, epics, and memory. Use at session start to restore context.',
+    },
+    args: {
+        scope: {
+            type: 'string',
+            description: 'Scope filter (global or epic:T###)',
+            alias: 's',
+        },
+        'max-next': {
+            type: 'string',
+            description: 'Maximum next tasks to show',
+            default: '5',
+        },
+        'max-bugs': {
+            type: 'string',
+            description: 'Maximum bugs to show',
+            default: '10',
+        },
+        'max-blocked': {
+            type: 'string',
+            description: 'Maximum blocked tasks to show',
+            default: '10',
+        },
+        'max-epics': {
+            type: 'string',
+            description: 'Maximum active epics to show',
+            default: '5',
+        },
+    },
+    async run({ args }) {
+        await dispatchFromCli('query', 'session', 'briefing.show', {
+            scope: args.scope,
+            maxNextTasks: parseInt(args['max-next'], 10),
+            maxBugs: parseInt(args['max-bugs'], 10),
+            maxBlocked: parseInt(args['max-blocked'], 10),
+            maxEpics: parseInt(args['max-epics'], 10),
+        }, { command: 'briefing' });
+    },
+});
+//# sourceMappingURL=briefing.js.map

package/dist/cli/commands/briefing.js.map

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