@cleocode/cleo 2026.3.73 → 2026.3.76

package/dist/dispatch/engines/system-engine.js

@@ -1,1180 +0,0 @@
-/**
- * System Engine
- *
- * Thin wrapper layer that delegates to core modules.
- * All business logic lives in src/core/.
- *
- * Read-only queries: dash, stats, labels, archive-stats, log, context, sequence,
- *   metrics, health, diagnostics, help, roadmap, compliance
- * Mutate operations: inject.generate, backup, restore, migrate, cleanup, audit,
- *   sync, safestop, uncancel
- *
- * @task T4631
- * @task T4783
- */
-import { existsSync, readdirSync, readFileSync } from 'node:fs';
-import { basename, join } from 'node:path';
-import { auditData, cleanupSystem, systemCreateBackup as createBackup, generateInjection, getAccessor, getArchiveStats, getDashboard, getLabels, getMigrationStatus, getProjectStats, getRoadmap, getRuntimeDiagnostics, getSystemDiagnostics, getSystemHealth, getSystemMetrics, listSystemBackups, repairSequence, restoreBackup, safestop, uncancelTask, } from '@cleocode/core/internal';
-import { engineError } from './_error.js';
-// ===== Help topics (static data, stays in engine) =====
-const HELP_TOPICS = {
-    session: {
-        topic: 'session',
-        content: [
-            'Session Management',
-            '',
-            '  ct session list                        - List all sessions',
-            '  ct session start --scope epic:T001     - Start session',
-            '  ct session end --note "Progress"       - End session',
-            '  ct session resume <id>                 - Resume session',
-        ].join('\n'),
-        relatedCommands: ['ct session list', 'ct session start', 'ct session end'],
-    },
-    tasks: {
-        topic: 'tasks',
-        content: [
-            'Task Operations',
-            '',
-            '  ct add "Title" --desc "Description"    - Create task',
-            '  ct update T1234 --status active        - Update task',
-            '  ct complete T1234                      - Complete task',
-            '  ct find "query"                        - Search tasks',
-            '  ct show T1234                          - Show task details',
-        ].join('\n'),
-        relatedCommands: ['ct add', 'ct update', 'ct complete', 'ct find', 'ct show'],
-    },
-    focus: {
-        topic: 'focus',
-        content: [
-            'Task Work Management',
-            '',
-            '  ct start T1234    - Start working on task',
-            '  ct current        - Show current task',
-            '  ct stop           - Stop working on current task',
-        ].join('\n'),
-        relatedCommands: ['ct start', 'ct current', 'ct stop'],
-    },
-    labels: {
-        topic: 'labels',
-        content: [
-            'Label Operations',
-            '',
-            '  ct labels              - List all labels',
-            '  ct labels show <name>  - Show tasks with label',
-        ].join('\n'),
-        relatedCommands: ['ct labels'],
-    },
-    compliance: {
-        topic: 'compliance',
-        content: [
-            'Compliance Monitoring',
-            '',
-            '  ct compliance summary     - Compliance overview',
-            '  ct compliance violations  - List violations',
-            '  ct compliance trend       - Compliance trend',
-        ].join('\n'),
-        relatedCommands: ['ct compliance summary', 'ct compliance violations'],
-    },
-};
-// ===== Dashboard =====
-/**
- * Project dashboard: task counts by status, active session info,
- * current focus, recent completions.
- */
-export async function systemDash(projectRoot, params) {
-    try {
-        const accessor = await getAccessor(projectRoot);
-        const result = await getDashboard({ cwd: projectRoot, blockedTasksLimit: params?.blockedTasksLimit }, accessor);
-        // Add missing fields that core doesn't produce
-        const data = result;
-        const summary = data.summary;
-        return {
-            success: true,
-            data: {
-                project: data.project,
-                currentPhase: data.currentPhase,
-                summary: {
-                    pending: summary.pending,
-                    active: summary.active,
-                    blocked: summary.blocked,
-                    done: summary.done,
-                    cancelled: summary.cancelled ?? 0,
-                    total: summary.total,
-                    archived: summary.archived ?? 0,
-                    grandTotal: summary.grandTotal ?? summary.total,
-                },
-                taskWork: (data.focus ?? data.taskWork),
-                activeSession: data.activeSession ?? null,
-                highPriority: data.highPriority,
-                blockedTasks: data.blockedTasks,
-                recentCompletions: (data.recentCompletions ?? []),
-                topLabels: data.topLabels,
-            },
-        };
-    }
-    catch (err) {
-        return engineError('E_NOT_INITIALIZED', err.message);
-    }
-}
-// ===== Stats =====
-/**
- * Detailed statistics: tasks by status/priority/type/phase,
- * completion rate, average cycle time.
- */
-export async function systemStats(projectRoot, params) {
-    try {
-        const accessor = await getAccessor(projectRoot);
-        const result = await getProjectStats({ period: String(params?.period ?? 30), cwd: projectRoot }, accessor);
-        // Core stats lacks byPriority, byType, byPhase, cycleTimes — fill from accessor
-        const queryResult = await accessor.queryTasks({});
-        const tasks = queryResult?.tasks ?? [];
-        // Distribution breakdowns: active tasks only (exclude cancelled — not actionable work)
-        const activeTasks = tasks.filter((t) => t.status !== 'cancelled');
-        const byPriority = {};
-        for (const t of activeTasks) {
-            byPriority[t.priority] = (byPriority[t.priority] ?? 0) + 1;
-        }
-        const byType = {};
-        for (const t of activeTasks) {
-            const type = t.type || 'task';
-            byType[type] = (byType[type] ?? 0) + 1;
-        }
-        const byPhase = {};
-        for (const t of activeTasks) {
-            const phase = t.phase || 'unassigned';
-            byPhase[phase] = (byPhase[phase] ?? 0) + 1;
-        }
-        // Cycle times
-        const completedTasks = tasks.filter((t) => t.status === 'done' && t.completedAt && t.createdAt);
-        let totalCycleDays = 0;
-        let samples = 0;
-        for (const t of completedTasks) {
-            const created = new Date(t.createdAt).getTime();
-            const completed = new Date(t.completedAt).getTime();
-            if (completed > created) {
-                totalCycleDays += (completed - created) / 86400000;
-                samples++;
-            }
-        }
-        const averageDays = samples > 0 ? Math.round((totalCycleDays / samples) * 100) / 100 : null;
-        const coreData = result;
-        const currentState = coreData.currentState;
-        const completionMetrics = coreData.completionMetrics;
-        const activityMetrics = coreData.activityMetrics;
-        const allTime = coreData.allTime;
-        return {
-            success: true,
-            data: {
-                currentState: {
-                    pending: currentState.pending,
-                    active: currentState.active,
-                    done: currentState.done,
-                    blocked: currentState.blocked,
-                    cancelled: tasks.filter((t) => t.status === 'cancelled').length,
-                    totalActive: currentState.totalActive,
-                    archived: currentState.archived ?? 0,
-                    grandTotal: currentState.grandTotal ?? currentState.totalActive,
-                },
-                byPriority,
-                byType,
-                byPhase,
-                completionMetrics: completionMetrics,
-                activityMetrics: activityMetrics,
-                allTime: allTime,
-                cycleTimes: { averageDays, samples },
-            },
-        };
-    }
-    catch (err) {
-        return engineError('E_NOT_INITIALIZED', err.message);
-    }
-}
-// ===== Labels =====
-/**
- * List all unique labels across tasks with counts and task IDs per label.
- */
-export async function systemLabels(projectRoot) {
-    try {
-        const accessor = await getAccessor(projectRoot);
-        const result = await getLabels(projectRoot, accessor);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_NOT_INITIALIZED', err.message);
-    }
-}
-// ===== Archive Stats =====
-/**
- * Archive metrics: total archived, by reason, average cycle time, archive rate.
- */
-export async function systemArchiveStats(projectRoot, params) {
-    try {
-        const accessor = await getAccessor(projectRoot);
-        const result = await getArchiveStats({ period: params?.period, cwd: projectRoot }, accessor);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_NOT_INITIALIZED', err.message);
-    }
-}
-// ===== Log =====
-/**
- * Query audit log with optional filters.
- * Reads from SQLite audit_log table.
- *
- * @task T4837
- */
-export async function systemLog(projectRoot, filters) {
-    try {
-        // Canonical path: SQLite audit_log table.
-        const entries = await queryAuditLogSqlite(projectRoot, filters);
-        return { success: true, data: entries };
-    }
-    catch (err) {
-        return engineError('E_FILE_ERROR', err.message);
-    }
-}
-/**
- * Query audit_log from SQLite.
- * Includes dispatch-level fields (domain, requestId, durationMs, success,
- * source, gateway, errorMessage) when present (T4844).
- *
- * @task T4837
- * @task T4844
- */
-async function queryAuditLogSqlite(projectRoot, filters) {
-    try {
-        const { join } = await import('node:path');
-        const { existsSync } = await import('node:fs');
-        const dbPath = join(projectRoot, '.cleo', 'tasks.db');
-        if (!existsSync(dbPath)) {
-            const offset = filters?.offset ?? 0;
-            const limit = filters?.limit ?? 20;
-            return {
-                entries: [],
-                pagination: { total: 0, offset, limit, hasMore: false },
-            };
-        }
-        const { getDb } = await import('@cleocode/core/internal');
-        const { auditLog } = await import('@cleocode/core/internal');
-        const { sql } = await import('drizzle-orm');
-        const db = await getDb(projectRoot);
-        // Check if audit_log table exists and has data
-        try {
-            // Build dynamic WHERE conditions
-            const conditions = [];
-            if (filters?.operation) {
-                // Match against both legacy 'action' column and new 'operation' column
-                conditions.push(sql `(${auditLog.action} = ${filters.operation} OR ${auditLog.operation} = ${filters.operation})`);
-            }
-            if (filters?.taskId) {
-                conditions.push(sql `${auditLog.taskId} = ${filters.taskId}`);
-            }
-            if (filters?.since) {
-                conditions.push(sql `${auditLog.timestamp} >= ${filters.since}`);
-            }
-            if (filters?.until) {
-                conditions.push(sql `${auditLog.timestamp} <= ${filters.until}`);
-            }
-            const whereClause = conditions.length > 0 ? sql.join(conditions, sql ` AND `) : sql `1=1`;
-            // Count total matching entries
-            const countResult = await db.all(sql `SELECT count(*) as cnt FROM ${auditLog} WHERE ${whereClause}`);
-            const total = countResult[0]?.cnt ?? 0;
-            if (total === 0) {
-                return {
-                    entries: [],
-                    pagination: {
-                        total: 0,
-                        offset: filters?.offset ?? 0,
-                        limit: filters?.limit ?? 20,
-                        hasMore: false,
-                    },
-                };
-            }
-            const offset = filters?.offset ?? 0;
-            const limit = filters?.limit ?? 20;
-            // Fetch paginated results (includes dispatch-level columns)
-            const rows = await db.all(sql `SELECT * FROM ${auditLog}
-            WHERE ${whereClause}
-            ORDER BY ${auditLog.timestamp} DESC
-            LIMIT ${limit} OFFSET ${offset}`);
-            const entries = rows.map((row) => ({
-                operation: row.operation ?? row.action,
-                taskId: row.task_id,
-                timestamp: row.timestamp,
-                actor: row.actor,
-                details: row.details_json ? JSON.parse(row.details_json) : {},
-                before: row.before_json ? JSON.parse(row.before_json) : undefined,
-                after: row.after_json ? JSON.parse(row.after_json) : undefined,
-                // Dispatch-level fields (may be null for legacy task-only entries)
-                ...(row.domain != null && {
-                    domain: row.domain,
-                    sessionId: row.session_id,
-                    requestId: row.request_id,
-                    durationMs: row.duration_ms,
-                    success: row.success === 1,
-                    source: row.source,
-                    gateway: row.gateway,
-                    error: row.error_message,
-                }),
-            }));
-            return {
-                entries,
-                pagination: { total, offset, limit, hasMore: offset + limit < total },
-            };
-        }
-        catch {
-            const offset = filters?.offset ?? 0;
-            const limit = filters?.limit ?? 20;
-            return {
-                entries: [],
-                pagination: { total: 0, offset, limit, hasMore: false },
-            };
-        }
-    }
-    catch {
-        const offset = filters?.offset ?? 0;
-        const limit = filters?.limit ?? 20;
-        return {
-            entries: [],
-            pagination: { total: 0, offset, limit, hasMore: false },
-        };
-    }
-}
-// ===== Context =====
-/**
- * Context window tracking: estimate token usage from current session/state.
- */
-export function systemContext(projectRoot, params) {
-    try {
-        const cleoDir = join(projectRoot, '.cleo');
-        // Resolve state file
-        let stateFile;
-        if (params?.session) {
-            const sessionFile = join(cleoDir, 'context-states', `context-state-${params.session}.json`);
-            stateFile = existsSync(sessionFile) ? sessionFile : join(cleoDir, '.context-state.json');
-        }
-        else {
-            const currentSessionPath = join(cleoDir, '.current-session');
-            if (existsSync(currentSessionPath)) {
-                const currentSession = readFileSync(currentSessionPath, 'utf-8').trim();
-                if (currentSession) {
-                    const sessionFile = join(cleoDir, 'context-states', `context-state-${currentSession}.json`);
-                    stateFile = existsSync(sessionFile) ? sessionFile : join(cleoDir, '.context-state.json');
-                }
-                else {
-                    stateFile = join(cleoDir, '.context-state.json');
-                }
-            }
-            else {
-                stateFile = join(cleoDir, '.context-state.json');
-            }
-        }
-        // Collect session files
-        const sessions = [];
-        const statesDir = join(cleoDir, 'context-states');
-        if (existsSync(statesDir)) {
-            for (const file of readdirSync(statesDir)) {
-                if (file.startsWith('context-state-') && file.endsWith('.json')) {
-                    try {
-                        const state = JSON.parse(readFileSync(join(statesDir, file), 'utf-8'));
-                        sessions.push({
-                            file: basename(file),
-                            sessionId: state.sessionId ?? null,
-                            percentage: state.contextWindow?.percentage ?? 0,
-                            status: state.status ?? 'unknown',
-                            timestamp: state.timestamp,
-                        });
-                    }
-                    catch {
-                        // skip invalid files
-                    }
-                }
-            }
-        }
-        const singletonFile = join(cleoDir, '.context-state.json');
-        if (existsSync(singletonFile)) {
-            try {
-                const state = JSON.parse(readFileSync(singletonFile, 'utf-8'));
-                sessions.push({
-                    file: '.context-state.json',
-                    sessionId: state.sessionId ?? 'global',
-                    percentage: state.contextWindow?.percentage ?? 0,
-                    status: state.status ?? 'unknown',
-                    timestamp: state.timestamp,
-                });
-            }
-            catch {
-                // skip
-            }
-        }
-        if (!existsSync(stateFile)) {
-            return {
-                success: true,
-                data: {
-                    available: false,
-                    status: 'unavailable',
-                    percentage: 0,
-                    currentTokens: 0,
-                    maxTokens: 0,
-                    timestamp: null,
-                    stale: true,
-                    sessions,
-                },
-            };
-        }
-        try {
-            const state = JSON.parse(readFileSync(stateFile, 'utf-8'));
-            const timestamp = state.timestamp;
-            const staleMs = state.staleAfterMs ?? 5000;
-            const percentage = state.contextWindow?.percentage ?? 0;
-            const current = state.contextWindow?.currentTokens ?? 0;
-            const max = state.contextWindow?.maxTokens ?? 0;
-            let status = state.status ?? 'unknown';
-            const fileTime = new Date(timestamp).getTime();
-            if (Date.now() - fileTime > staleMs) {
-                status = 'stale';
-            }
-            return {
-                success: true,
-                data: {
-                    available: true,
-                    status,
-                    percentage,
-                    currentTokens: current,
-                    maxTokens: max,
-                    timestamp,
-                    stale: status === 'stale',
-                    sessions,
-                },
-            };
-        }
-        catch {
-            return {
-                success: true,
-                data: {
-                    available: false,
-                    status: 'error',
-                    percentage: 0,
-                    currentTokens: 0,
-                    maxTokens: 0,
-                    timestamp: null,
-                    stale: true,
-                    sessions,
-                },
-            };
-        }
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Sequence =====
-/**
- * Read task ID sequence state from canonical SQLite metadata.
- * Supports 'show' and 'check' actions.
- * @task T4815
- */
-export async function systemSequence(projectRoot, params) {
-    const { showSequence, checkSequence } = await import('@cleocode/core/internal');
-    try {
-        const action = params?.action ?? 'show';
-        if (action === 'check') {
-            const check = await checkSequence(projectRoot);
-            return { success: true, data: check };
-        }
-        const seq = await showSequence(projectRoot);
-        return {
-            success: true,
-            data: {
-                counter: Number(seq.counter ?? 0),
-                lastId: String(seq.lastId ?? ''),
-                checksum: String(seq.checksum ?? ''),
-                nextId: String(seq.nextId ?? ''),
-            },
-        };
-    }
-    catch (err) {
-        return engineError('E_NOT_FOUND', err.message);
-    }
-}
-// ===== Inject Generate (MVI) =====
-/**
- * Generate Minimum Viable Injection (MVI).
- */
-export async function systemInjectGenerate(projectRoot) {
-    try {
-        const root = projectRoot || process.cwd();
-        const accessor = await getAccessor(root);
-        const result = await generateInjection(root, accessor);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Metrics =====
-/**
- * System metrics: token usage, compliance summary, session counts.
- * @task T4631
- */
-export async function systemMetrics(projectRoot, params) {
-    try {
-        const accessor = await getAccessor(projectRoot);
-        const result = await getSystemMetrics(projectRoot, params, accessor);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Health =====
-/**
- * System health check: verify core data files exist and are valid.
- * @task T4631
- */
-export function systemHealth(projectRoot, params) {
-    try {
-        const result = getSystemHealth(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Diagnostics =====
-/**
- * System diagnostics: extended health checks with fix suggestions.
- * @task T4631
- */
-export async function systemDiagnostics(projectRoot, params) {
-    try {
-        const result = await getSystemDiagnostics(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Help =====
-/**
- * Return help text for the system.
- * @task T4631
- */
-export function systemHelp(_projectRoot, params) {
-    const topic = params?.topic;
-    if (topic) {
-        const topicHelp = HELP_TOPICS[topic];
-        if (topicHelp) {
-            return { success: true, data: topicHelp };
-        }
-        return engineError('E_NOT_FOUND', `Unknown help topic: ${topic}. Available topics: ${Object.keys(HELP_TOPICS).join(', ')}`);
-    }
-    return {
-        success: true,
-        data: {
-            content: [
-                'CLEO Task Management System',
-                '',
-                'Essential Commands:',
-                '  ct find "query"    - Fuzzy search tasks',
-                '  ct show T1234      - Full task details',
-                '  ct add "Task"      - Create task',
-                '  ct done <id>       - Complete task',
-                '  ct start <id>      - Start working on task',
-                '  ct dash            - Project overview',
-                '  ct session list    - List sessions',
-                '',
-                'Help Topics: session, tasks, focus, labels, compliance',
-            ].join('\n'),
-            relatedCommands: ['ct find', 'ct show', 'ct add', 'ct done', 'ct dash'],
-        },
-    };
-}
-// ===== Roadmap =====
-/**
- * Generate roadmap from pending epics and optional CHANGELOG history.
- * @task T4631
- */
-export async function systemRoadmap(projectRoot, params) {
-    try {
-        const accessor = await getAccessor(projectRoot);
-        const result = await getRoadmap({
-            includeHistory: params?.includeHistory,
-            upcomingOnly: params?.upcomingOnly,
-            cwd: projectRoot,
-        }, accessor);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_NOT_INITIALIZED', err.message);
-    }
-}
-// ===== Compliance =====
-/**
- * System compliance report from COMPLIANCE.jsonl.
- * @task T4631
- */
-export function systemCompliance(projectRoot, params) {
-    try {
-        if (params?.subcommand === 'trend') {
-            const compliancePath = join(projectRoot, '.cleo', 'metrics', 'COMPLIANCE.jsonl');
-            let entries = [];
-            if (existsSync(compliancePath)) {
-                const content = readFileSync(compliancePath, 'utf-8').trim();
-                if (content) {
-                    entries = content
-                        .split('\n')
-                        .filter((l) => l.trim())
-                        .map((l) => JSON.parse(l));
-                }
-            }
-            if (params.epic) {
-                entries = entries.filter((e) => {
-                    const ctx = (e._context ?? {});
-                    return ctx.epic_id === params.epic || ctx.task_id === params.epic;
-                });
-            }
-            if (params.days) {
-                const cutoff = new Date(Date.now() - params.days * 86400000).toISOString();
-                entries = entries.filter((e) => e.timestamp >= cutoff);
-            }
-            const totalEntries = entries.length;
-            const compliance = entries.map((e) => (e.compliance ?? {}));
-            const avgPassRate = totalEntries > 0
-                ? Math.round((compliance.reduce((sum, c) => sum + (c.compliance_pass_rate ?? 0), 0) /
-                    totalEntries) *
-                    1000) / 1000
-                : 0;
-            const avgAdherence = totalEntries > 0
-                ? Math.round((compliance.reduce((sum, c) => sum + (c.rule_adherence_score ?? 0), 0) /
-                    totalEntries) *
-                    1000) / 1000
-                : 0;
-            const totalViolations = compliance.reduce((sum, c) => sum + (c.violation_count ?? 0), 0);
-            const byDate = {};
-            for (const e of entries) {
-                const date = e.timestamp.split('T')[0];
-                if (!byDate[date])
-                    byDate[date] = [];
-                byDate[date].push(e);
-            }
-            const dataPoints = Object.entries(byDate)
-                .sort(([a], [b]) => a.localeCompare(b))
-                .map(([date, dayEntries]) => {
-                const dayCompliance = dayEntries.map((de) => (de.compliance ?? {}));
-                return {
-                    date,
-                    entries: dayEntries.length,
-                    avgPassRate: dayCompliance.reduce((s, c) => s + (c.compliance_pass_rate ?? 0), 0) /
-                        dayEntries.length,
-                    violations: dayCompliance.reduce((s, c) => s + (c.violation_count ?? 0), 0),
-                };
-            });
-            let trend;
-            if (dataPoints.length >= 2) {
-                const first = dataPoints[0].avgPassRate;
-                const last = dataPoints[dataPoints.length - 1].avgPassRate;
-                trend = last > first ? 'improving' : last < first ? 'declining' : 'stable';
-            }
-            else {
-                trend = 'insufficient_data';
-            }
-            return {
-                success: true,
-                data: {
-                    totalEntries,
-                    averagePassRate: avgPassRate,
-                    averageAdherence: avgAdherence,
-                    totalViolations,
-                    trend,
-                    dataPoints,
-                },
-            };
-        }
-        // Default: summary (possibly filtered by epic/days)
-        const compliancePath = join(projectRoot, '.cleo', 'metrics', 'COMPLIANCE.jsonl');
-        let entries = [];
-        if (existsSync(compliancePath)) {
-            const content = readFileSync(compliancePath, 'utf-8').trim();
-            if (content) {
-                entries = content
-                    .split('\n')
-                    .filter((l) => l.trim())
-                    .map((l) => JSON.parse(l));
-            }
-        }
-        if (params?.epic) {
-            entries = entries.filter((e) => {
-                const ctx = (e._context ?? {});
-                return ctx.epic_id === params.epic || ctx.task_id === params.epic;
-            });
-        }
-        if (params?.days) {
-            const cutoff = new Date(Date.now() - params.days * 86400000).toISOString();
-            entries = entries.filter((e) => e.timestamp >= cutoff);
-        }
-        const totalEntries = entries.length;
-        const compliance = entries.map((e) => (e.compliance ?? {}));
-        const avgPassRate = totalEntries > 0
-            ? Math.round((compliance.reduce((sum, c) => sum + (c.compliance_pass_rate ?? 0), 0) /
-                totalEntries) *
-                1000) / 1000
-            : 0;
-        const avgAdherence = totalEntries > 0
-            ? Math.round((compliance.reduce((sum, c) => sum + (c.rule_adherence_score ?? 0), 0) /
-                totalEntries) *
-                1000) / 1000
-            : 0;
-        const totalViolations = compliance.reduce((sum, c) => sum + (c.violation_count ?? 0), 0);
-        return {
-            success: true,
-            data: {
-                totalEntries,
-                averagePassRate: avgPassRate,
-                averageAdherence: avgAdherence,
-                totalViolations,
-            },
-        };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Backup =====
-/**
- * Create a backup of CLEO data files.
- * @task T4631
- */
-export function systemBackup(projectRoot, params) {
-    try {
-        const result = createBackup(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-/**
- * List available system backups (read-only).
- * @task T4783
- */
-export function systemListBackups(projectRoot) {
-    try {
-        const result = listSystemBackups(projectRoot);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Restore =====
-/**
- * Restore from a backup.
- * @task T4631
- */
-export function systemRestore(projectRoot, params) {
-    try {
-        const result = restoreBackup(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        const code = err.code ?? 'E_RESTORE_FAILED';
-        return engineError(code, err.message);
-    }
-}
-/**
- * Restore an individual file from backup.
- * @task T5329
- */
-export async function backupRestore(projectRoot, fileName, options) {
-    try {
-        const { getBackupDir, getTaskPath, getConfigPath } = await import('@cleocode/core/internal');
-        const { restoreFromBackup, listBackups } = await import('@cleocode/core/internal');
-        const backupDir = getBackupDir(projectRoot);
-        const targetPathMap = {
-            'tasks.db': getTaskPath,
-            'config.json': getConfigPath,
-        };
-        const pathGetter = targetPathMap[fileName];
-        if (!pathGetter) {
-            return engineError('E_INVALID_INPUT', `Unknown file: ${fileName}. Valid files: tasks.db, config.json`);
-        }
-        const targetPath = pathGetter();
-        const backups = await listBackups(fileName, backupDir);
-        if (backups.length === 0) {
-            return engineError('E_NOT_FOUND', `No backups found for ${fileName}`);
-        }
-        if (options?.dryRun) {
-            return {
-                success: true,
-                data: {
-                    restored: false,
-                    file: fileName,
-                    from: backups[0],
-                    targetPath,
-                    dryRun: true,
-                },
-            };
-        }
-        const restoredFrom = await restoreFromBackup(fileName, backupDir, targetPath);
-        return {
-            success: true,
-            data: {
-                restored: true,
-                file: fileName,
-                from: restoredFrom,
-                targetPath,
-            },
-        };
-    }
-    catch (err) {
-        const message = err instanceof Error ? err.message : String(err);
-        if (message.includes('not found') || message.includes('No backups')) {
-            return engineError('E_NOT_FOUND', message);
-        }
-        return engineError('E_GENERAL', `Backup restore failed: ${message}`);
-    }
-}
-// ===== Migrate =====
-/**
- * Check/run schema migrations.
- * @task T4631
- */
-export async function systemMigrate(projectRoot, params) {
-    try {
-        const result = await getMigrationStatus(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        const code = err.code ?? 'E_MIGRATE_FAILED';
-        return engineError(code, err.message);
-    }
-}
-// ===== Cleanup =====
-/**
- * Cleanup stale data (sessions, backups, logs).
- * @task T4631
- */
-export async function systemCleanup(projectRoot, params) {
-    try {
-        const result = await cleanupSystem(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        const code = err.code ?? 'E_CLEANUP_FAILED';
-        return engineError(code, err.message);
-    }
-}
-// ===== Audit =====
-/**
- * Audit data integrity.
- * @task T4631
- */
-export async function systemAudit(projectRoot, params) {
-    try {
-        const result = await auditData(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-/**
- * Sync check (no external sync targets in native mode).
- * @task T4631
- */
-export function systemSync(_projectRoot, params) {
-    return {
-        success: true,
-        data: {
-            direction: params?.direction ?? 'up',
-            synced: 0,
-            conflicts: 0,
-            message: 'Sync is a no-op in native mode (no external sync targets configured)',
-        },
-    };
-}
-// ===== Safestop =====
-/**
- * Safe stop: signal clean shutdown for agents.
- * @task T4631
- */
-export function systemSafestop(projectRoot, params) {
-    try {
-        const result = safestop(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Uncancel =====
-/**
- * Uncancel a cancelled task (restore to pending).
- * @task T4631
- */
-export async function systemUncancel(projectRoot, params) {
-    try {
-        const result = await uncancelTask(projectRoot, params);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        const code = err.code ?? 'E_UNCANCEL_FAILED';
-        return engineError(code, err.message);
-    }
-}
-// ===== Doctor Report =====
-/**
- * Run comprehensive doctor diagnostics.
- * @task T4795
- */
-export async function systemDoctor(projectRoot) {
-    const { coreDoctorReport } = await import('@cleocode/core/internal');
-    try {
-        const result = await coreDoctorReport(projectRoot);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-// ===== Doctor Fix =====
-/**
- * Run auto-fix for failed doctor checks.
- * @task T4795
- */
-export async function systemFix(projectRoot) {
-    const { runDoctorFixes } = await import('@cleocode/core/internal');
-    try {
-        const result = await runDoctorFixes(projectRoot);
-        return { success: true, data: result };
-    }
-    catch (err) {
-        return engineError('E_GENERAL', err.message);
-    }
-}
-/**
- * Runtime/channel diagnostics for CLI/MCP installation mode checks.
- * @task T4815
- */
-export async function systemRuntime(_projectRoot, params) {
-    try {
-        const data = await getRuntimeDiagnostics({ detailed: params?.detailed ?? false });
-        return { success: true, data };
-    }
-    catch (err) {
-        return engineError('E_RUNTIME_ERROR', err.message);
-    }
-}
-/**
- * Repair task ID sequence using canonical core implementation.
- * @task T4815
- */
-export async function systemSequenceRepair(projectRoot) {
-    try {
-        const repair = await repairSequence(projectRoot);
-        return {
-            success: true,
-            data: {
-                repaired: repair.repaired,
-                message: repair.message,
-                counter: repair.counter,
-                oldCounter: repair.oldCounter,
-                newCounter: repair.newCounter,
-            },
-        };
-    }
-    catch (err) {
-        return engineError('E_SEQUENCE_REPAIR_FAILED', err.message);
-    }
-}
-/**
- * Smoke-test definitions: one lightweight read-only query per domain.
- * Each probe exercises the full dispatch pipeline (middleware, handler, engine, core).
- */
-const SMOKE_PROBES = [
-    { domain: 'admin', operation: 'version' },
-    { domain: 'tasks', operation: 'find', params: { query: '__smoke_probe__', limit: 1 } },
-    { domain: 'session', operation: 'status' },
-    { domain: 'memory', operation: 'find', params: { query: '__smoke_probe__' } },
-    { domain: 'pipeline', operation: 'list' },
-    { domain: 'check', operation: 'schema' },
-    { domain: 'tools', operation: 'list', params: { limit: 1 } },
-    { domain: 'sticky', operation: 'list', params: { limit: 1 } },
-    { domain: 'nexus', operation: 'status' },
-    { domain: 'orchestrate', operation: 'status' },
-];
-/**
- * Run operational smoke tests across all domains.
- *
- * Dispatches one read-only query per domain through the full CLI dispatch
- * pipeline and reports pass/fail with timing. Catches crashes (TypeError,
- * ReferenceError, etc.) not just structured error responses.
- *
- * @task T130
- */
-export async function systemSmoke() {
-    const { dispatchRaw } = await import('../adapters/cli.js');
-    const totalStart = Date.now();
-    const probes = [];
-    for (const probe of SMOKE_PROBES) {
-        const start = Date.now();
-        try {
-            const response = await dispatchRaw('query', probe.domain, probe.operation, probe.params);
-            const elapsed = Date.now() - start;
-            if (response.success) {
-                probes.push({
-                    domain: probe.domain,
-                    operation: probe.operation,
-                    status: 'pass',
-                    timeMs: elapsed,
-                });
-            }
-            else {
-                // Structured error responses that are domain-specific (like "no session") are still valid
-                // operational results — the dispatch pipeline worked. Only treat E_INTERNAL / E_NO_HANDLER as failures.
-                const code = response.error?.code ?? '';
-                const isCrash = code === 'E_INTERNAL' || code === 'E_NO_HANDLER';
-                probes.push({
-                    domain: probe.domain,
-                    operation: probe.operation,
-                    status: isCrash ? 'fail' : 'pass',
-                    timeMs: elapsed,
-                    ...(isCrash ? { error: response.error?.message } : {}),
-                });
-            }
-        }
-        catch (err) {
-            const elapsed = Date.now() - start;
-            probes.push({
-                domain: probe.domain,
-                operation: probe.operation,
-                status: 'fail',
-                timeMs: elapsed,
-                error: err instanceof Error ? `${err.constructor.name}: ${err.message}` : String(err),
-            });
-        }
-    }
-    // --- DB connectivity and migration state checks ---
-    const dbChecks = [];
-    // tasks.db connectivity + integrity
-    {
-        const start = Date.now();
-        try {
-            const { getDb, getNativeDb } = await import('@cleocode/core/internal');
-            const projectRoot = (await import('@cleocode/core/internal')).getProjectRoot();
-            await getDb(projectRoot);
-            const nativeDb = getNativeDb();
-            if (nativeDb) {
-                const result = nativeDb.prepare('PRAGMA integrity_check').get();
-                const ok = result?.integrity_check === 'ok';
-                dbChecks.push({
-                    domain: 'db',
-                    operation: 'tasks.db',
-                    status: ok ? 'pass' : 'fail',
-                    timeMs: Date.now() - start,
-                    ...(!ok ? { error: 'SQLite integrity check failed' } : {}),
-                });
-            }
-            else {
-                dbChecks.push({
-                    domain: 'db',
-                    operation: 'tasks.db',
-                    status: 'fail',
-                    timeMs: Date.now() - start,
-                    error: 'Native DB handle unavailable',
-                });
-            }
-        }
-        catch (err) {
-            dbChecks.push({
-                domain: 'db',
-                operation: 'tasks.db',
-                status: 'fail',
-                timeMs: Date.now() - start,
-                error: err instanceof Error ? err.message : String(err),
-            });
-        }
-    }
-    // brain.db connectivity
-    {
-        const start = Date.now();
-        try {
-            const { getBrainDb } = await import('@cleocode/core/internal');
-            const projectRoot = (await import('@cleocode/core/internal')).getProjectRoot();
-            const brainDb = await getBrainDb(projectRoot);
-            if (brainDb) {
-                dbChecks.push({
-                    domain: 'db',
-                    operation: 'brain.db',
-                    status: 'pass',
-                    timeMs: Date.now() - start,
-                });
-            }
-            else {
-                dbChecks.push({
-                    domain: 'db',
-                    operation: 'brain.db',
-                    status: 'fail',
-                    timeMs: Date.now() - start,
-                    error: 'brain.db not initialized',
-                });
-            }
-        }
-        catch (err) {
-            dbChecks.push({
-                domain: 'db',
-                operation: 'brain.db',
-                status: 'fail',
-                timeMs: Date.now() - start,
-                error: err instanceof Error ? err.message : String(err),
-            });
-        }
-    }
-    // Migration state validation (detect stale journals)
-    {
-        const start = Date.now();
-        try {
-            const migrationStatus = await getMigrationStatus((await import('@cleocode/core/internal')).getProjectRoot());
-            const hasPending = migrationStatus.migrations.some((m) => !m.applied);
-            dbChecks.push({
-                domain: 'db',
-                operation: 'migrations',
-                status: hasPending ? 'fail' : 'pass',
-                timeMs: Date.now() - start,
-                ...(hasPending
-                    ? { error: `Unapplied migrations detected (${migrationStatus.from} → ${migrationStatus.to}). Run: cleo upgrade` }
-                    : {}),
-            });
-        }
-        catch (err) {
-            dbChecks.push({
-                domain: 'db',
-                operation: 'migrations',
-                status: 'fail',
-                timeMs: Date.now() - start,
-                error: err instanceof Error ? err.message : String(err),
-            });
-        }
-    }
-    const allProbes = [...probes, ...dbChecks];
-    const totalMs = Date.now() - totalStart;
-    const passed = allProbes.filter((p) => p.status === 'pass').length;
-    const failed = allProbes.filter((p) => p.status === 'fail').length;
-    const skipped = allProbes.filter((p) => p.status === 'skip').length;
-    return {
-        success: failed === 0,
-        data: { probes, dbChecks, passed, failed, skipped, totalMs },
-        ...(failed > 0
-            ? {
-                error: {
-                    code: 'E_SMOKE_FAILURES',
-                    message: `${failed} probe(s) failed smoke test`,
-                    exitCode: 1,
-                },
-            }
-            : {}),
-    };
-}
-//# sourceMappingURL=system-engine.js.map