@cleocode/cleo 2026.3.46 → 2026.3.47

package/dist/mcp/index.js

@@ -34804,6 +34804,7 @@ __export(scaffold_exports, {
   CLEO_GITIGNORE_FALLBACK: () => CLEO_GITIGNORE_FALLBACK,
   REQUIRED_CLEO_SUBDIRS: () => REQUIRED_CLEO_SUBDIRS,
   REQUIRED_GLOBAL_SUBDIRS: () => REQUIRED_GLOBAL_SUBDIRS,
+  STALE_GLOBAL_ENTRIES: () => STALE_GLOBAL_ENTRIES,
   checkBrainDb: () => checkBrainDb,
   checkCleoGitRepo: () => checkCleoGitRepo,
   checkCleoStructure: () => checkCleoStructure,
@@ -34840,7 +34841,7 @@ __export(scaffold_exports, {
 import { execFile as execFile3 } from "node:child_process";
 import { randomUUID } from "node:crypto";
 import { existsSync as existsSync34, constants as fsConstants3, readFileSync as readFileSync22, statSync as statSync8 } from "node:fs";
-import { access as access3, mkdir as mkdir5, readFile as readFile6, writeFile as writeFile5 } from "node:fs/promises";
+import { access as access3, mkdir as mkdir5, readFile as readFile6, rm as rm2, writeFile as writeFile5 } from "node:fs/promises";
 import { dirname as dirname8, join as join37, resolve as resolve5 } from "node:path";
 import { fileURLToPath as fileURLToPath4 } from "node:url";
 import { promisify as promisify3 } from "node:util";
@@ -34855,7 +34856,7 @@ async function fileExists(path2) {
 async function stripCLEOBlocks(filePath) {
   if (!existsSync34(filePath)) return;
   const content = await readFile6(filePath, "utf8");
-  const stripped = content.replace(/\n?<!-- CLEO:START -->[\s\S]*?<!-- CLEO:END -->\n?/g, "");
+  const stripped = content.replace(/\n?<!-- CLEO:START[^>]*-->[\s\S]*?<!-- CLEO:END -->\n?/g, "");
   if (stripped !== content) await writeFile5(filePath, stripped, "utf8");
 }
 async function removeCleoFromRootGitignore(projectRoot) {
@@ -35538,6 +35539,19 @@ async function ensureGlobalHome() {
   for (const subdir of REQUIRED_GLOBAL_SUBDIRS) {
     await mkdir5(join37(cleoHome, subdir), { recursive: true });
   }
+  for (const stale of STALE_GLOBAL_ENTRIES) {
+    const stalePath = join37(cleoHome, stale);
+    if (existsSync34(stalePath)) {
+      try {
+        await rm2(stalePath, { recursive: true, force: true });
+        console.warn(`[CLEO] Removed stale global entry: ${stalePath}`);
+      } catch (err) {
+        console.warn(
+          `[CLEO] Could not remove stale global entry ${stalePath}: ${err instanceof Error ? err.message : String(err)}`
+        );
+      }
+    }
+  }
   return {
     action: alreadyExists ? "skipped" : "created",
     path: cleoHome,
@@ -35652,7 +35666,7 @@ function checkLogDir(projectRoot) {
     fix: null
   };
 }
-var execFileAsync3, REQUIRED_CLEO_SUBDIRS, CLEO_GITIGNORE_FALLBACK, REQUIRED_GLOBAL_SUBDIRS;
+var execFileAsync3, REQUIRED_CLEO_SUBDIRS, CLEO_GITIGNORE_FALLBACK, REQUIRED_GLOBAL_SUBDIRS, STALE_GLOBAL_ENTRIES;
 var init_scaffold = __esm({
   "packages/core/src/scaffold.ts"() {
     "use strict";
@@ -35710,6 +35724,20 @@ metrics/
 backups/
 `;
     REQUIRED_GLOBAL_SUBDIRS = ["logs", "templates"];
+    STALE_GLOBAL_ENTRIES = [
+      "adrs",
+      "rcasd",
+      "agent-outputs",
+      "backups",
+      "sandbox",
+      "tasks.db",
+      "tasks.db-shm",
+      "tasks.db-wal",
+      "brain-worker.pid",
+      "VERSION",
+      "schemas",
+      "bin"
+    ];
   }
 });
 
@@ -39445,8 +39473,8 @@ function parseTokenMetrics(inputFile, cwd) {
     const raw = JSON.parse(readFileSync28(file2, "utf-8"));
     if (raw.resourceMetrics) {
       const points = [];
-      for (const rm2 of raw.resourceMetrics ?? []) {
-        for (const sm of rm2.scopeMetrics ?? []) {
+      for (const rm3 of raw.resourceMetrics ?? []) {
+        for (const sm of rm3.scopeMetrics ?? []) {
           for (const metric of sm.metrics ?? []) {
             if (metric.name !== "claude_code.token.usage") continue;
             for (const dp of metric.sum?.dataPoints ?? []) {
@@ -65273,6 +65301,7 @@ async function bootstrapGlobalCleo(options) {
   await injectAgentsHub(ctx);
   await installMcpToProviders(ctx);
   await installSkillsGlobally(ctx);
+  await installAgentDefinitionGlobally(ctx);
   await installProviderAdapters(ctx, options?.packageRoot);
   return ctx;
 }
@@ -65323,7 +65352,10 @@ async function injectAgentsHub(ctx) {
       await mkdir17(globalAgentsDir, { recursive: true });
       if (existsSync103(globalAgentsMd)) {
         const content = await readFile19(globalAgentsMd, "utf8");
-        const stripped = content.replace(/\n?<!-- CLEO:START -->[\s\S]*?<!-- CLEO:END -->\n?/g, "");
+        const stripped = content.replace(
+          /\n?<!-- CLEO:START[^>]*-->[\s\S]*?<!-- CLEO:END -->\n?/g,
+          ""
+        );
         if (stripped !== content) {
           await writeFile12(globalAgentsMd, stripped, "utf8");
         }
@@ -65347,7 +65379,7 @@ async function injectAgentsHub(ctx) {
           if (existsSync103(instructFilePath)) {
             const fileContent = await readFile19(instructFilePath, "utf8");
             const stripped = fileContent.replace(
-              /\n?<!-- CLEO:START -->[\s\S]*?<!-- CLEO:END -->\n?/g,
+              /\n?<!-- CLEO:START[^>]*-->[\s\S]*?<!-- CLEO:END -->\n?/g,
               ""
             );
             if (stripped !== fileContent) {
@@ -65416,6 +65448,20 @@ async function installSkillsGlobally(ctx) {
     );
   }
 }
+async function installAgentDefinitionGlobally(ctx) {
+  try {
+    if (!ctx.isDryRun) {
+      const { initAgentDefinition: initAgentDefinition2 } = await Promise.resolve().then(() => (init_init(), init_exports));
+      await initAgentDefinition2(ctx.created, ctx.warnings);
+    } else {
+      ctx.created.push("agent: cleo-subagent (would symlink)");
+    }
+  } catch (err) {
+    ctx.warnings.push(
+      `Agent definition install: ${err instanceof Error ? err.message : String(err)}`
+    );
+  }
+}
 async function installProviderAdapters(ctx, packageRootOverride) {
   try {
     const { AdapterManager: AdapterManager2 } = await Promise.resolve().then(() => (init_adapters(), adapters_exports));