@cleocode/cleo 2026.2.5 → 2026.2.6

package/dist/cli/commands/detect-drift.js

@@ -1,202 +0,0 @@
-/**
- * detect-drift command
- * @epic T4698
- * @task T4705
- */
-import { resolveFormat } from '../middleware/output-format.js';
-import { readFileSync, existsSync, readdirSync } from 'node:fs';
-import { join } from 'node:path';
-export function registerDetectDriftCommand(program) {
-    program
-        .command('detect-drift')
-        .description('Detect documentation drift against TypeScript source of truth')
-        .option('--json', 'Output in JSON format')
-        .option('--human', 'Output in human-readable format')
-        .action(async (options) => {
-        const format = resolveFormat(options);
-        const projectRoot = join(import.meta.dirname ?? '', '..', '..', '..');
-        const results = {
-            checks: [],
-            errors: 0,
-            warnings: 0,
-        };
-        const addResult = (name, status, message, details) => {
-            results.checks.push({ name, status, message, details });
-            if (status === 'fail')
-                results.errors++;
-            if (status === 'warn')
-                results.warnings++;
-        };
-        // Helper to read file safely
-        const safeRead = (path) => {
-            try {
-                return readFileSync(path, 'utf-8');
-            }
-            catch {
-                return '';
-            }
-        };
-        // 1. Gateway-to-spec sync
-        try {
-            const specPath = join(projectRoot, 'docs', 'specs', 'CLEO-OPERATIONS-REFERENCE.md');
-            const queryPath = join(projectRoot, 'src', 'mcp', 'gateways', 'query.ts');
-            const mutatePath = join(projectRoot, 'src', 'mcp', 'gateways', 'mutate.ts');
-            if (existsSync(specPath) && existsSync(queryPath) && existsSync(mutatePath)) {
-                const specContent = safeRead(specPath);
-                // Simple check for operation names appearing in both
-                const specOpsMatch = specContent.match(/- \`([a-z_]+)\`/g) || [];
-                const specOps = specOpsMatch.map(m => m.replace(/- `|`/g, ''));
-                if (specOps.length > 0) {
-                    addResult('Gateway-to-spec sync', 'pass', `Spec exists and lists ${specOps.length} operations`);
-                }
-                else {
-                    addResult('Gateway-to-spec sync', 'warn', 'Spec file exists but could not parse operations');
-                }
-            }
-            else {
-                addResult('Gateway-to-spec sync', 'fail', 'Gateway files or OPERATIONS-REFERENCE.md missing');
-            }
-        }
-        catch (e) {
-            addResult('Gateway-to-spec sync', 'fail', `Error: ${e.message}`);
-        }
-        // 2. CLI-to-core sync
-        try {
-            const cliDir = join(projectRoot, 'src', 'cli', 'commands');
-            const coreDir = join(projectRoot, 'src', 'core');
-            if (existsSync(cliDir) && existsSync(coreDir)) {
-                const files = readdirSync(cliDir).filter(f => f.endsWith('.ts'));
-                // In an ideal world, we parse the imports here using TS compiler API
-                // For now, we just ensure the directories exist and have files
-                addResult('CLI-to-core sync', 'pass', `Found ${files.length} CLI command files`);
-            }
-            else {
-                addResult('CLI-to-core sync', 'fail', 'CLI commands or core directory missing');
-            }
-        }
-        catch (e) {
-            addResult('CLI-to-core sync', 'fail', `Error: ${e.message}`);
-        }
-        // 3. Domain handler coverage
-        try {
-            const domainsDir = join(projectRoot, 'src', 'mcp', 'domains');
-            if (existsSync(domainsDir)) {
-                const files = readdirSync(domainsDir).filter(f => f.endsWith('.ts'));
-                addResult('Domain handler coverage', 'pass', `Found ${files.length} domain handler files`);
-            }
-            else {
-                addResult('Domain handler coverage', 'fail', 'MCP domains directory missing');
-            }
-        }
-        catch (e) {
-            addResult('Domain handler coverage', 'fail', `Error: ${e.message}`);
-        }
-        // 4. Capability matrix sync
-        try {
-            const matrixPath = join(projectRoot, 'src', 'mcp', 'engine', 'capability-matrix.ts');
-            if (existsSync(matrixPath)) {
-                addResult('Capability matrix sync', 'pass', 'Capability matrix file exists');
-            }
-            else {
-                addResult('Capability matrix sync', 'fail', 'Capability matrix missing');
-            }
-        }
-        catch (e) {
-            addResult('Capability matrix sync', 'fail', `Error: ${e.message}`);
-        }
-        // 5. Schema table coverage
-        try {
-            const schemaPath = join(projectRoot, 'src', 'store', 'schema.ts');
-            if (existsSync(schemaPath)) {
-                const content = safeRead(schemaPath);
-                if (content.includes('CREATE TABLE')) {
-                    addResult('Schema table coverage', 'pass', 'Schema file exists and contains SQL DDL');
-                }
-                else {
-                    addResult('Schema table coverage', 'warn', 'Schema file exists but no CREATE TABLE statements found');
-                }
-            }
-            else {
-                addResult('Schema table coverage', 'fail', 'Schema missing');
-            }
-        }
-        catch (e) {
-            addResult('Schema table coverage', 'fail', `Error: ${e.message}`);
-        }
-        // 6. Canonical identity
-        try {
-            const visionPath = join(projectRoot, 'docs', 'concepts', 'vision.mdx');
-            const specPath = join(projectRoot, 'docs', 'specs', 'PORTABLE-BRAIN-SPEC.md');
-            if (existsSync(visionPath) && existsSync(specPath)) {
-                const specContent = safeRead(specPath);
-                const requiredPillars = [
-                    'Portable Memory',
-                    'Provenance by Default',
-                    'Interoperable Interfaces',
-                    'Deterministic Safety',
-                    'Cognitive Retrieval'
-                ];
-                const missingPillars = requiredPillars.filter(p => !specContent.includes(p));
-                if (missingPillars.length === 0) {
-                    addResult('Canonical identity', 'pass', 'Vision and Portable Brain spec exist with all pillars');
-                }
-                else {
-                    addResult('Canonical identity', 'fail', `Portable Brain Spec missing pillars: ${missingPillars.join(', ')}`);
-                }
-            }
-            else {
-                addResult('Canonical identity', 'fail', 'Vision or Portable Brain spec missing');
-            }
-        }
-        catch (e) {
-            addResult('Canonical identity', 'fail', `Error: ${e.message}`);
-        }
-        // 7. Agent injection
-        try {
-            const injectionPath = join(projectRoot, '.cleo', 'templates', 'CLEO-INJECTION.md');
-            if (existsSync(injectionPath)) {
-                const content = safeRead(injectionPath);
-                if (content.length > 0) {
-                    addResult('Agent injection', 'pass', 'Agent injection template exists');
-                }
-                else {
-                    addResult('Agent injection', 'fail', 'Agent injection template is empty');
-                }
-            }
-            else {
-                addResult('Agent injection', 'fail', 'Agent injection template missing at .cleo/templates/CLEO-INJECTION.md');
-            }
-        }
-        catch (e) {
-            addResult('Agent injection', 'fail', `Error: ${e.message}`);
-        }
-        // 8. Exit code sync
-        try {
-            const exitCodesPath = join(projectRoot, 'src', 'types', 'exit-codes.ts');
-            if (existsSync(exitCodesPath)) {
-                addResult('Exit code sync', 'pass', 'Exit codes file exists');
-            }
-            else {
-                addResult('Exit code sync', 'fail', 'Exit codes missing');
-            }
-        }
-        catch (e) {
-            addResult('Exit code sync', 'fail', `Error: ${e.message}`);
-        }
-        if (format.format === 'json') {
-            console.log(JSON.stringify(results, null, 2));
-        }
-        else {
-            console.log('CLEO Documentation Drift Detection\n');
-            for (const check of results.checks) {
-                const icon = check.status === 'pass' ? '✅' : check.status === 'warn' ? '⚠️' : '❌';
-                console.log(`${icon} ${check.name}: ${check.message}`);
-            }
-            console.log(`\nSummary: ${results.errors} errors, ${results.warnings} warnings`);
-            if (results.errors > 0) {
-                process.exit(1);
-            }
-        }
-    });
-}
-//# sourceMappingURL=detect-drift.js.map

package/dist/cli/commands/detect-drift.js.map

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package/dist/cli/commands/docs.d.ts

@@ -1,13 +0,0 @@
-/**
- * CLI docs command - documentation management with drift detection and gap checking.
- * Ported from scripts/docs.sh
- * @task T4551
- * @epic T4545
- */
-import { Command } from 'commander';
-/**
- * Register the docs command.
- * @task T4551
- */
-export declare function registerDocsCommand(program: Command): void;
-//# sourceMappingURL=docs.d.ts.map

package/dist/cli/commands/docs.d.ts.map

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package/dist/cli/commands/docs.js

@@ -1,167 +0,0 @@
-/**
- * CLI docs command - documentation management with drift detection and gap checking.
- * Ported from scripts/docs.sh
- * @task T4551
- * @epic T4545
- */
-import { readdir, readFile } from 'node:fs/promises';
-import { join } from 'node:path';
-import { formatError } from '../../core/output.js';
-import { cliOutput } from '../renderers/index.js';
-import { CleoError } from '../../core/errors.js';
-import { readJson } from '../../store/json.js';
-import { getAgentOutputsAbsolute } from '../../core/paths.js';
-/**
- * Get list of script files from scripts/ directory.
- * @task T4551
- */
-async function getScriptNames(projectRoot) {
-    const scriptsDir = join(projectRoot, 'scripts');
-    try {
-        const files = await readdir(scriptsDir);
-        return files
-            .filter((f) => f.endsWith('.sh'))
-            .map((f) => f.replace('.sh', ''))
-            .sort();
-    }
-    catch {
-        return [];
-    }
-}
-/**
- * Get command names from COMMANDS-INDEX.json.
- * @task T4551
- */
-async function getIndexedCommands(projectRoot) {
-    const indexPath = join(projectRoot, 'docs', 'commands', 'COMMANDS-INDEX.json');
-    const index = await readJson(indexPath);
-    if (!index)
-        return [];
-    return index.commands.map((c) => c.name).sort();
-}
-/**
- * Run drift detection between scripts and documentation index.
- * @task T4551
- */
-async function detectDrift(projectRoot) {
-    const scripts = await getScriptNames(projectRoot);
-    const indexed = await getIndexedCommands(projectRoot);
-    const scriptSet = new Set(scripts);
-    const indexSet = new Set(indexed);
-    const missingFromIndex = scripts.filter((s) => !indexSet.has(s));
-    const missingFromScripts = indexed.filter((i) => !scriptSet.has(i));
-    const warnings = [];
-    if (missingFromIndex.length > 0) {
-        warnings.push(`${missingFromIndex.length} scripts not in COMMANDS-INDEX.json`);
-    }
-    if (missingFromScripts.length > 0) {
-        warnings.push(`${missingFromScripts.length} index entries without scripts`);
-    }
-    let status = 'clean';
-    if (missingFromIndex.length > 0 || missingFromScripts.length > 0) {
-        status = missingFromIndex.length > 5 ? 'error' : 'warning';
-    }
-    return { status, missingFromIndex, missingFromScripts, warnings };
-}
-/**
- * Run gap-check validation for review docs.
- * @task T4551
- */
-async function runGapCheck(_projectRoot, filterId) {
-    const reviewDir = getAgentOutputsAbsolute();
-    const results = [];
-    try {
-        const files = await readdir(reviewDir);
-        const reviewFiles = files.filter((f) => f.endsWith('.md'));
-        for (const file of reviewFiles) {
-            // Check filter
-            if (filterId && !file.includes(filterId))
-                continue;
-            const filePath = join(reviewDir, file);
-            const content = await readFile(filePath, 'utf-8');
-            // Extract task ID from filename (e.g., T2402-protocol-spec.md)
-            const taskMatch = file.match(/^(T\d+)/);
-            const taskId = taskMatch ? taskMatch[1] : 'UNKNOWN';
-            const gaps = [];
-            // Check for required sections
-            if (!content.includes('## Summary')) {
-                gaps.push('Missing ## Summary section');
-            }
-            if (!content.includes('**Task**:') && !content.includes('**Task:**')) {
-                gaps.push('Missing Task provenance header');
-            }
-            if (gaps.length > 0) {
-                results.push({ file, taskId, gaps });
-            }
-        }
-    }
-    catch {
-        // Review directory might not exist
-    }
-    return results;
-}
-/**
- * Register the docs command.
- * @task T4551
- */
-export function registerDocsCommand(program) {
-    const docsCmd = program
-        .command('docs')
-        .description('Documentation management: drift detection and gap validation');
-    docsCmd
-        .command('sync')
-        .description('Run drift detection between scripts and docs index')
-        .option('--quick', 'Quick check (commands only)')
-        .option('--strict', 'Exit with error on any drift')
-        .action(async (opts) => {
-        try {
-            const projectRoot = process.cwd();
-            const result = await detectDrift(projectRoot);
-            cliOutput({
-                status: result.status,
-                missingFromIndex: result.missingFromIndex,
-                missingFromScripts: result.missingFromScripts,
-                warnings: result.warnings,
-            }, { command: 'docs', message: result.status === 'clean' ? 'Documentation is in sync' : `Drift detected: ${result.warnings.join('; ')}` });
-            if (opts['strict'] && result.status !== 'clean') {
-                process.exit(result.status === 'error' ? 2 : 1);
-            }
-        }
-        catch (err) {
-            if (err instanceof CleoError) {
-                console.error(formatError(err));
-                process.exit(err.code);
-            }
-            throw err;
-        }
-    });
-    docsCmd
-        .command('gap-check')
-        .description('Validate knowledge transfer from review docs to canonical docs')
-        .option('--epic <id>', 'Filter by epic ID')
-        .option('--task <id>', 'Filter by task ID')
-        .action(async (opts) => {
-        try {
-            const projectRoot = process.cwd();
-            const filterId = opts['epic'] ?? opts['task'];
-            const gaps = await runGapCheck(projectRoot, filterId);
-            if (gaps.length === 0) {
-                cliOutput({ gapCount: 0, results: [] }, { command: 'docs', message: 'No documentation gaps found' });
-            }
-            else {
-                cliOutput({
-                    gapCount: gaps.length,
-                    results: gaps,
-                }, { command: 'docs', message: `Found ${gaps.length} document(s) with gaps` });
-            }
-        }
-        catch (err) {
-            if (err instanceof CleoError) {
-                console.error(formatError(err));
-                process.exit(err.code);
-            }
-            throw err;
-        }
-    });
-}
-//# sourceMappingURL=docs.js.map

package/dist/cli/commands/docs.js.map

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package/dist/cli/commands/doctor.d.ts

@@ -1,7 +0,0 @@
-/**
- * CLI doctor command - system diagnostics.
- * @task T4454
- */
-import { Command } from 'commander';
-export declare function registerDoctorCommand(program: Command): void;
-//# sourceMappingURL=doctor.d.ts.map

package/dist/cli/commands/doctor.d.ts.map

@@ -1 +0,0 @@
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package/dist/cli/commands/doctor.js

@@ -1,215 +0,0 @@
-/**
- * CLI doctor command - system diagnostics.
- * @task T4454
- */
-import { formatError } from '../../core/output.js';
-import { CleoError } from '../../core/errors.js';
-import { cliOutput } from '../renderers/index.js';
-import { ExitCode } from '../../types/exit-codes.js';
-import { getAccessor } from '../../store/data-accessor.js';
-import { getTaskPath, getConfigPath, getArchivePath, getLogPath, getCleoHome, getCleoDirAbsolute, getProjectRoot } from '../../core/paths.js';
-import { checkCleoGitignore, checkVitalFilesTracked, checkLegacyAgentOutputs } from '../../core/validation/doctor/checks.js';
-import { stat, access, readFile } from 'node:fs/promises';
-import { constants as fsConstants } from 'node:fs';
-import { join } from 'node:path';
-import { execFile } from 'node:child_process';
-import { promisify } from 'node:util';
-const execAsync = promisify(execFile);
-async function fileExists(path) {
-    try {
-        await access(path, fsConstants.R_OK);
-        return true;
-    }
-    catch {
-        return false;
-    }
-}
-async function fileSize(path) {
-    try {
-        const st = await stat(path);
-        return st.size;
-    }
-    catch {
-        return -1;
-    }
-}
-async function commandExists(cmd) {
-    try {
-        const { stdout } = await execAsync('which', [cmd]);
-        return stdout.trim();
-    }
-    catch {
-        return null;
-    }
-}
-export function registerDoctorCommand(program) {
-    program
-        .command('doctor')
-        .description('Run system diagnostics and health checks')
-        .action(async () => {
-        try {
-            const checks = [];
-            // 1. Check dependencies
-            const jqPath = await commandExists('jq');
-            checks.push({
-                check: 'jq_installed',
-                status: jqPath ? 'ok' : 'error',
-                message: jqPath ? `jq found: ${jqPath}` : 'jq not found. Install: https://jqlang.github.io/jq/download/',
-            });
-            const gitPath = await commandExists('git');
-            checks.push({
-                check: 'git_installed',
-                status: gitPath ? 'ok' : 'warning',
-                message: gitPath ? `git found: ${gitPath}` : 'git not found (optional)',
-            });
-            // 2. Check CLEO directories
-            const cleoHome = getCleoHome();
-            const cleoDir = getCleoDirAbsolute();
-            const homeExists = await fileExists(cleoHome);
-            checks.push({
-                check: 'cleo_home',
-                status: homeExists ? 'ok' : 'warning',
-                message: homeExists ? `CLEO home: ${cleoHome}` : `CLEO home not found: ${cleoHome}`,
-            });
-            const dirExists = await fileExists(cleoDir);
-            checks.push({
-                check: 'project_dir',
-                status: dirExists ? 'ok' : 'error',
-                message: dirExists ? `Project dir: ${cleoDir}` : `Project dir not found: ${cleoDir}. Run: cleo init`,
-            });
-            // 3. Check data files
-            const todoPath = getTaskPath();
-            const todoExists = await fileExists(todoPath);
-            const todoSize = await fileSize(todoPath);
-            checks.push({
-                check: 'todo_file',
-                status: todoExists ? 'ok' : 'error',
-                message: todoExists
-                    ? `todo.json: ${todoSize} bytes`
-                    : `todo.json not found: ${todoPath}`,
-            });
-            if (todoExists) {
-                try {
-                    const accessor = await getAccessor();
-                    const data = await accessor.loadTaskFile();
-                    const taskCount = data.tasks?.length ?? 0;
-                    const schemaVersion = data._meta?.schemaVersion ?? 'unknown';
-                    checks.push({
-                        check: 'todo_data',
-                        status: 'ok',
-                        message: `${taskCount} tasks, schema v${schemaVersion}`,
-                        details: { taskCount, schemaVersion },
-                    });
-                }
-                catch {
-                    checks.push({
-                        check: 'todo_data',
-                        status: 'error',
-                        message: 'Failed to parse todo.json',
-                    });
-                }
-            }
-            const configPath = getConfigPath();
-            const configExists = await fileExists(configPath);
-            checks.push({
-                check: 'config_file',
-                status: configExists ? 'ok' : 'warning',
-                message: configExists ? 'config.json present' : 'config.json not found (using defaults)',
-            });
-            const archivePath = getArchivePath();
-            const archiveExists = await fileExists(archivePath);
-            checks.push({
-                check: 'archive_file',
-                status: 'ok',
-                message: archiveExists ? 'archive file present' : 'no archive file (normal for new projects)',
-            });
-            const logPath = getLogPath();
-            const logExists = await fileExists(logPath);
-            checks.push({
-                check: 'log_file',
-                status: logExists ? 'ok' : 'warning',
-                message: logExists ? 'log file present' : 'log file not found',
-            });
-            // 4. Check root .gitignore for .cleo/ blocking
-            const projRoot = getProjectRoot();
-            const rootGitignorePath = join(projRoot, '.gitignore');
-            if (await fileExists(rootGitignorePath)) {
-                try {
-                    const gitignoreContent = await readFile(rootGitignorePath, 'utf-8');
-                    const blockingLines = gitignoreContent.split('\n').filter(line => {
-                        const trimmed = line.trim();
-                        if (trimmed.startsWith('#') || trimmed === '')
-                            return false;
-                        return /^\/?\.cleo\/?(\*)?$/.test(trimmed);
-                    });
-                    checks.push({
-                        check: 'root_gitignore',
-                        status: blockingLines.length > 0 ? 'warning' : 'ok',
-                        message: blockingLines.length > 0
-                            ? `.cleo/ is ignored in root .gitignore. Run 'cleo init' to fix.`
-                            : 'Root .gitignore does not block .cleo/',
-                        ...(blockingLines.length > 0 ? { details: { blockingLines } } : {}),
-                    });
-                }
-                catch {
-                    // Ignore read errors for gitignore check
-                }
-            }
-            // 5. Gitignore integrity, vital files, legacy paths
-            const projRootChecks = getProjectRoot();
-            const gitignoreCheck = checkCleoGitignore(projRootChecks);
-            checks.push({
-                check: gitignoreCheck.id,
-                status: gitignoreCheck.status === 'passed' ? 'ok' : gitignoreCheck.status === 'warning' ? 'warning' : 'error',
-                message: gitignoreCheck.message,
-                ...(gitignoreCheck.fix ? { details: { fix: gitignoreCheck.fix } } : {}),
-            });
-            const vitalCheck = checkVitalFilesTracked(projRootChecks);
-            checks.push({
-                check: vitalCheck.id,
-                status: vitalCheck.status === 'passed' ? 'ok' : vitalCheck.status === 'info' ? 'ok' : 'warning',
-                message: vitalCheck.message,
-                ...(vitalCheck.fix ? { details: { fix: vitalCheck.fix } } : {}),
-            });
-            const legacyCheck = checkLegacyAgentOutputs(projRootChecks);
-            checks.push({
-                check: legacyCheck.id,
-                status: legacyCheck.status === 'passed' ? 'ok' : 'warning',
-                message: legacyCheck.message,
-                ...(legacyCheck.fix ? { details: { fix: legacyCheck.fix } } : {}),
-            });
-            // 6. Environment
-            checks.push({
-                check: 'node_version',
-                status: 'ok',
-                message: `Node.js ${process.version}`,
-            });
-            checks.push({
-                check: 'platform',
-                status: 'ok',
-                message: `${process.platform} ${process.arch}`,
-            });
-            // Summary
-            const errorCount = checks.filter((c) => c.status === 'error').length;
-            const warningCount = checks.filter((c) => c.status === 'warning').length;
-            const healthy = errorCount === 0;
-            cliOutput({
-                healthy,
-                errors: errorCount,
-                warnings: warningCount,
-                checks,
-            }, { command: 'doctor', operation: 'system.health' });
-            if (!healthy) {
-                process.exit(ExitCode.VALIDATION_ERROR);
-            }
-        }
-        catch (err) {
-            if (err instanceof CleoError) {
-                console.error(formatError(err));
-                process.exit(err.code);
-            }
-            throw err;
-        }
-    });
-}
-//# sourceMappingURL=doctor.js.map

package/dist/cli/commands/doctor.js.map

@@ -1 +0,0 @@
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