@cleocode/cleo 2026.10.21 → 2026.10.22

package/bin/cleo.js

@@ -117,7 +117,11 @@ function heapCapApplied() {
 
 if (
   args[0] === 'hook' &&
-  (args[1] === 'heavy-command' || args[1] === 'ask-enforce' || args[1] === 'stop') &&
+  (args[1] === 'heavy-command' ||
+    args[1] === 'ask-enforce' ||
+    args[1] === 'stop' ||
+    args[1] === 'session-end' ||
+    args[1] === 'subagent-start') &&
   !args.includes('--help') &&
   !args.includes('-h')
 ) {

package/dist/cli/{adapter-O3IXUY2O.js → adapter-2LBGQENJ.js}

@@ -18,17 +18,17 @@ import {
 } from "./chunk-YY66LFZF.js";
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
   defineCommand
 } from "./chunk-PKKZPOOP.js";
 import "./chunk-QKMBWYAS.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/adapter.ts
 var listCommand = defineCommand({
@@ -156,4 +156,4 @@ var adapterCommand = defineCommand({
 export {
   adapterCommand
 };
-//# sourceMappingURL=adapter-O3IXUY2O.js.map
+//# sourceMappingURL=adapter-2LBGQENJ.js.map

package/dist/cli/{add-X25TVFAO.js → add-JKD32F5Y.js}

@@ -20,7 +20,7 @@ import {
   dispatchRaw,
   handleRawError,
   maybeEmitDescribe
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
@@ -33,10 +33,10 @@ import {
   cliOutput,
   humanInfo,
   humanWarn
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/add.ts
 import { TASK_SEVERITIES } from "@cleocode/contracts/enums.js";
@@ -440,4 +440,4 @@ For 2+ tasks at once: cleo add-batch --file tasks.json (single transaction, atom
 export {
   addCommand
 };
-//# sourceMappingURL=add-X25TVFAO.js.map
+//# sourceMappingURL=add-JKD32F5Y.js.map

package/dist/cli/{add-batch-I2OLBMHE.js → add-batch-GZLTZJJS.js}

@@ -19,7 +19,7 @@ import {
 import {
   dispatchRaw,
   maybeEmitDescribe
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
@@ -29,10 +29,10 @@ import "./chunk-QKMBWYAS.js";
 import {
   cliError,
   cliOutput
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/add-batch.ts
 import { ExitCode } from "@cleocode/contracts/exit-codes.js";
@@ -161,4 +161,4 @@ var addBatchCommand = defineCommand({
 export {
   addBatchCommand
 };
-//# sourceMappingURL=add-batch-I2OLBMHE.js.map
+//# sourceMappingURL=add-batch-GZLTZJJS.js.map

package/dist/cli/{admin-TGZIJYCC.js → admin-4C5UGT6N.js}

@@ -18,7 +18,7 @@ import {
 } from "./chunk-4VASFLUW.js";
 import {
   lazyOperation
-} from "./chunk-GAMCDPPS.js";
+} from "./chunk-BFRYJSL5.js";
 import {
   defineTypedHandler,
   lafsError,
@@ -194,7 +194,7 @@ var SMOKE_PROBES = [
   { domain: "adapter", operation: "list" }
 ];
 async function runSystemSmoke() {
-  const { dispatchRaw } = await import("./cli-OO2NRFIJ.js");
+  const { dispatchRaw } = await import("./cli-UUQQISGE.js");
   const totalStart = Date.now();
   const probes = [];
   for (const probe of SMOKE_PROBES) {
@@ -1456,4 +1456,4 @@ var AdminHandler = class {
 export {
   AdminHandler
 };
-//# sourceMappingURL=admin-TGZIJYCC.js.map
+//# sourceMappingURL=admin-4C5UGT6N.js.map

package/dist/cli/{admin-QU46DUBD.js → admin-P3XJMRKL.js}

@@ -15,7 +15,7 @@
 })();
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
@@ -25,12 +25,13 @@ import {
 import "./chunk-QKMBWYAS.js";
 import {
   cliError
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/admin.ts
+import { pushWarning } from "@cleocode/core/output";
 var versionCommand = defineCommand({
   meta: { name: "version", description: "Show CLEO version" },
   async run() {
@@ -129,9 +130,19 @@ var pathsCommand = defineCommand({
 var scaffoldHubCommand = defineCommand({
   meta: {
     name: "scaffold-hub",
-    description: "Create CleoOS Hub dirs (global-recipes, pi-extensions, cant-workflows, agents) and seed starter justfile"
+    // T13994 (ADR-098): hidden from `cleo admin --help`; still runs on request.
+    hidden: true,
+    description: "[DEPRECATED \u2014 ADR-098, the Pi/CleoOS harness is retiring] Create CleoOS Hub dirs (global-recipes, pi-extensions, cant-workflows, agents) and seed starter justfile"
   },
   async run() {
+    pushWarning({
+      code: "W_DEPRECATED_COMMAND",
+      message: "cleo admin scaffold-hub is deprecated: the Pi/CleoOS harness is retiring (ADR-098) and the hub will be removed in a later release.",
+      severity: "warn",
+      deprecated: "cleo admin scaffold-hub",
+      replacement: "none (CLI + per-harness hooks; CLEO Goal for autonomous runs)",
+      context: { task: "T13994", adr: "ADR-098" }
+    });
     await dispatchFromCli("mutate", "admin", "scaffold-hub", {}, { command: "admin" });
   }
 });
@@ -338,4 +349,4 @@ var adminCommand = defineCommand({
 export {
   adminCommand
 };
-//# sourceMappingURL=admin-QU46DUBD.js.map
+//# sourceMappingURL=admin-P3XJMRKL.js.map

package/dist/cli/{adr-4K6XFCL3.js → adr-5VVCQKCL.js}

@@ -15,7 +15,7 @@
 })();
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
@@ -23,10 +23,10 @@ import {
   showUsage
 } from "./chunk-PKKZPOOP.js";
 import "./chunk-QKMBWYAS.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/adr.ts
 var validateCommand = defineCommand({
@@ -169,4 +169,4 @@ var adrCommand = defineCommand({
 export {
   adrCommand
 };
-//# sourceMappingURL=adr-4K6XFCL3.js.map
+//# sourceMappingURL=adr-5VVCQKCL.js.map

package/dist/cli/{agent-TAFPIYUU.js → agent-WJMBY7QZ.js}

@@ -13,6 +13,9 @@
     return _origEmitWarning.call(process, warning, type, code, ctor);
   };
 })();
+import {
+  warnConduitDeprecated
+} from "./chunk-IGM44F43.js";
 import {
   AGENTS_SUBDIR,
   CANT_AGENTS_SUBDIR,
@@ -27,7 +30,7 @@ import {
   cliOutput,
   humanLine,
   humanWarn
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 
 // packages/cleo/src/cli/commands/agent.ts
@@ -571,6 +574,7 @@ var assignCommand = defineCommand({
     }
   },
   async run({ args }) {
+    warnConduitDeprecated("agent assign");
     try {
       const { AgentRegistryAccessor, createConduit } = await import("@cleocode/core/agents");
       await openCleoDb("project");
@@ -627,6 +631,7 @@ var wakeCommand = defineCommand({
     }
   },
   async run({ args }) {
+    warnConduitDeprecated("agent wake");
     try {
       const { AgentRegistryAccessor, createConduit } = await import("@cleocode/core/agents");
       await openCleoDb("project");
@@ -756,6 +761,7 @@ var reassignCommand = defineCommand({
     }
   },
   async run({ args }) {
+    warnConduitDeprecated("agent reassign");
     try {
       const { AgentRegistryAccessor, createConduit } = await import("@cleocode/core/agents");
       await openCleoDb("project");
@@ -1489,6 +1495,7 @@ var pollCommand = defineCommand({
     }
   },
   async run({ args }) {
+    warnConduitDeprecated("agent poll");
     try {
       const { AgentRegistryAccessor, createConduit } = await import("@cleocode/core/agents");
       await openCleoDb("project");
@@ -1540,6 +1547,7 @@ var sendCommand = defineCommand({
     }
   },
   async run({ args }) {
+    warnConduitDeprecated("agent send");
     try {
       const { AgentRegistryAccessor, createConduit } = await import("@cleocode/core/agents");
       await openCleoDb("project");
@@ -2401,4 +2409,4 @@ var agentCommand = defineCommand({
 export {
   agentCommand
 };
-//# sourceMappingURL=agent-TAFPIYUU.js.map
+//# sourceMappingURL=agent-WJMBY7QZ.js.map

package/dist/cli/{agent-outputs-HVJJIPS4.js → agent-outputs-YXT4PBX5.js}

@@ -20,7 +20,7 @@ import {
 import {
   cliError,
   cliOutput
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 
 // packages/cleo/src/cli/commands/agent-outputs.ts
@@ -81,4 +81,4 @@ var agentOutputsCommand = defineCommand({
 export {
   agentOutputsCommand
 };
-//# sourceMappingURL=agent-outputs-HVJJIPS4.js.map
+//# sourceMappingURL=agent-outputs-YXT4PBX5.js.map

package/dist/cli/{analyze-5VFYZGSQ.js → analyze-E7A3UYF6.js}

@@ -15,17 +15,17 @@
 })();
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
   defineCommand
 } from "./chunk-PKKZPOOP.js";
 import "./chunk-QKMBWYAS.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/analyze.ts
 var analyzeCommand = defineCommand({
@@ -46,4 +46,4 @@ var analyzeCommand = defineCommand({
 export {
   analyzeCommand
 };
-//# sourceMappingURL=analyze-5VFYZGSQ.js.map
+//# sourceMappingURL=analyze-E7A3UYF6.js.map

package/dist/cli/{archive-XAAH7B2V.js → archive-7YOOFH7I.js}

@@ -15,17 +15,17 @@
 })();
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
   defineCommand
 } from "./chunk-PKKZPOOP.js";
 import "./chunk-QKMBWYAS.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/archive.ts
 var archiveCommand = defineCommand({
@@ -62,4 +62,4 @@ var archiveCommand = defineCommand({
 export {
   archiveCommand
 };
-//# sourceMappingURL=archive-XAAH7B2V.js.map
+//# sourceMappingURL=archive-7YOOFH7I.js.map

package/dist/cli/{archive-stats-NLWOUJNW.js → archive-stats-GTOCA7SV.js}

@@ -15,17 +15,17 @@
 })();
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
   defineCommand
 } from "./chunk-PKKZPOOP.js";
 import "./chunk-QKMBWYAS.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/archive-stats.ts
 import { analyzeArchive } from "@cleocode/core/internal";
@@ -98,4 +98,4 @@ export {
   archiveStatsCommand,
   analyzeArchive as getArchiveStats
 };
-//# sourceMappingURL=archive-stats-NLWOUJNW.js.map
+//# sourceMappingURL=archive-stats-GTOCA7SV.js.map

package/dist/cli/{attention-5FVE65TR.js → attention-7EKWYNIN.js}

@@ -18,7 +18,7 @@ import {
   dispatchFromCli,
   dispatchRaw,
   handleRawError
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
@@ -29,10 +29,10 @@ import "./chunk-QKMBWYAS.js";
 import {
   cliError,
   cliOutput
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/attention.ts
 import { ExitCode } from "@cleocode/contracts/exit-codes.js";
@@ -165,4 +165,4 @@ var attentionCommand = defineCommand({
 export {
   attentionCommand
 };
-//# sourceMappingURL=attention-5FVE65TR.js.map
+//# sourceMappingURL=attention-7EKWYNIN.js.map

package/dist/cli/{audit-ICA2SEFN.js → audit-AGMVVXN4.js}

@@ -24,7 +24,7 @@ import {
 import {
   cliError,
   cliOutput
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 
 // packages/cleo/src/cli/commands/audit.ts
@@ -119,4 +119,4 @@ var auditCommand = defineCommand({
 export {
   auditCommand
 };
-//# sourceMappingURL=audit-ICA2SEFN.js.map
+//# sourceMappingURL=audit-AGMVVXN4.js.map

package/dist/cli/{auth-BWFZNJWE.js → auth-AMVLVI7Z.js}

@@ -15,13 +15,13 @@
 })();
 import {
   authRemoveCommand
-} from "./chunk-QWUFFDL3.js";
+} from "./chunk-M55K46WZ.js";
 import {
   LOGIN_ARGS,
   runLoginCommand
-} from "./chunk-RMJILHBI.js";
+} from "./chunk-5F43COYL.js";
 import "./chunk-GZFVDR44.js";
-import "./chunk-CGOF3GJE.js";
+import "./chunk-6MYVSVE5.js";
 import "./chunk-47JYZAMS.js";
 import "./chunk-C3B7C43W.js";
 import {
@@ -31,7 +31,7 @@ import {
 import {
   cliError,
   cliOutput
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 
 // packages/cleo/src/cli/commands/auth/consent.ts
@@ -488,4 +488,4 @@ var authCommand = defineCommand({
 export {
   authCommand
 };
-//# sourceMappingURL=auth-BWFZNJWE.js.map
+//# sourceMappingURL=auth-AMVLVI7Z.js.map

package/dist/cli/{backfill-LBSYBWLR.js → backfill-ZT2Z6NEJ.js}

@@ -22,7 +22,7 @@ import {
   humanLine,
   humanProgress,
   humanWarn
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 
 // packages/cleo/src/cli/commands/backfill.ts
@@ -153,4 +153,4 @@ var backfillCommand = defineCommand({
 export {
   backfillCommand
 };
-//# sourceMappingURL=backfill-LBSYBWLR.js.map
+//# sourceMappingURL=backfill-ZT2Z6NEJ.js.map

package/dist/cli/{backup-LUVQBQ6U.js → backup-ZJJSZKDJ.js}

@@ -15,10 +15,10 @@
 })();
 import {
   backupInspectSubCommand
-} from "./chunk-QJJWWCIC.js";
+} from "./chunk-G2YFY2Q6.js";
 import {
   backupRecoverSubCommand
-} from "./chunk-2MGFDMDF.js";
+} from "./chunk-U53YDZST.js";
 import "./chunk-47JYZAMS.js";
 import "./chunk-C3B7C43W.js";
 import {
@@ -26,7 +26,7 @@ import {
 } from "./chunk-YY66LFZF.js";
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import {
   CLEO_DIR_NAME,
   CLI_GLOBAL_BACKUP_FILES,
@@ -45,10 +45,10 @@ import {
   cliError,
   cliOutput,
   humanInfo
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/backup.ts
 import crypto from "node:crypto";
@@ -589,4 +589,4 @@ function sha256OfMachineKey(cleoHome) {
 export {
   backupCommand
 };
-//# sourceMappingURL=backup-LUVQBQ6U.js.map
+//# sourceMappingURL=backup-ZJJSZKDJ.js.map

package/dist/cli/{backup-inspect-PDRXI45A.js → backup-inspect-JMN74BT5.js}

@@ -15,12 +15,12 @@
 })();
 import {
   backupInspectSubCommand
-} from "./chunk-QJJWWCIC.js";
+} from "./chunk-G2YFY2Q6.js";
 import "./chunk-C3B7C43W.js";
 import "./chunk-PKKZPOOP.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 export {
   backupInspectSubCommand
 };
-//# sourceMappingURL=backup-inspect-PDRXI45A.js.map
+//# sourceMappingURL=backup-inspect-JMN74BT5.js.map

package/dist/cli/{backup-recover-TVKAPERB.js → backup-recover-AAQAEZUQ.js}

@@ -16,14 +16,14 @@
 import {
   backupRecoverBrainLeaf,
   backupRecoverSubCommand
-} from "./chunk-2MGFDMDF.js";
+} from "./chunk-U53YDZST.js";
 import "./chunk-47JYZAMS.js";
 import "./chunk-C3B7C43W.js";
 import "./chunk-PKKZPOOP.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 export {
   backupRecoverBrainLeaf,
   backupRecoverSubCommand
 };
-//# sourceMappingURL=backup-recover-TVKAPERB.js.map
+//# sourceMappingURL=backup-recover-AAQAEZUQ.js.map

package/dist/cli/{blockers-5NKNH3WL.js → blockers-KVTMU2LH.js}

@@ -15,17 +15,17 @@
 })();
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
   defineCommand
 } from "./chunk-PKKZPOOP.js";
 import "./chunk-QKMBWYAS.js";
-import "./chunk-4RGSNUUP.js";
+import "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/blockers.ts
 var blockersCommand = defineCommand({
@@ -52,4 +52,4 @@ var blockersCommand = defineCommand({
 export {
   blockersCommand
 };
-//# sourceMappingURL=blockers-5NKNH3WL.js.map
+//# sourceMappingURL=blockers-KVTMU2LH.js.map

package/dist/cli/{brain-EJOBKL4A.js → brain-QIOFNBGJ.js}

@@ -22,7 +22,7 @@ import {
   cliOutput,
   humanInfo,
   humanProgress
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 
 // packages/cleo/src/cli/commands/brain.ts
@@ -31,6 +31,7 @@ import { exportBrainAsGexf, exportBrainAsJson } from "@cleocode/core/memory/brai
 import { runBrainMaintenance } from "@cleocode/core/memory/brain-maintenance";
 import { purgeBrainNoise } from "@cleocode/core/memory/brain-purge";
 import { getPlasticityStats } from "@cleocode/core/memory/brain-stdp";
+import { migrateEvidenceRepoIds } from "@cleocode/core/memory/evidence-graph-links";
 import { getMemoryQualityReport } from "@cleocode/core/memory/quality-feedback";
 import { getProjectRoot } from "@cleocode/core/project-scope";
 var maintenanceCommand = defineCommand({
@@ -165,6 +166,39 @@ var backfillBrainCommand = defineCommand({
     }
   }
 });
+var migrateRepoIdsCommand = defineCommand({
+  meta: {
+    name: "migrate-repo-ids",
+    description: "Plan moving evidence file and commit graph links of repositories other than the primary one to repo-qualified ids (file:<repo>::<path>, commit:<repo>::<sha>). Dry run by default; --apply writes, after a receipt under .cleo/backups/migrations/. Ambiguous links are listed and left. Safe to re-run."
+  },
+  args: {
+    apply: { type: "boolean", description: "Write the moves (default: dry run)" },
+    json: { type: "boolean", description: "Output results as JSON" }
+  },
+  async run({ args }) {
+    const root = getProjectRoot();
+    try {
+      const result = await migrateEvidenceRepoIds(root, { apply: args.apply === true });
+      cliOutput(
+        { ...result },
+        {
+          command: "brain-migrate-repo-ids",
+          operation: "brain.migrate-repo-ids",
+          message: `${result.dryRun ? "Would move" : "Moved"} ${result.moved.length} evidence link(s); ${result.unresolved.length} ambiguous` + (result.receiptPath ? `; receipt ${result.receiptPath}` : "; dry run, rerun with --apply")
+        }
+      );
+    } catch (err) {
+      const message = err instanceof Error ? err.message : String(err);
+      cliError(
+        `Evidence repo-id migration failed: ${message}`,
+        "E_INTERNAL",
+        { name: "E_INTERNAL" },
+        { operation: "brain.migrate-repo-ids" }
+      );
+      process.exit(1);
+    }
+  }
+});
 var purgeCommand = defineCommand({
   meta: {
     name: "purge",
@@ -380,6 +414,7 @@ var brainCommand = defineCommand({
   subCommands: {
     maintenance: maintenanceCommand,
     backfill: backfillBrainCommand,
+    "migrate-repo-ids": migrateRepoIdsCommand,
     purge: purgeCommand,
     plasticity: plasticityCommand,
     quality: qualityCommand,
@@ -394,4 +429,4 @@ var brainCommand = defineCommand({
 export {
   brainCommand
 };
-//# sourceMappingURL=brain-EJOBKL4A.js.map
+//# sourceMappingURL=brain-QIOFNBGJ.js.map

package/dist/cli/{briefing-KZULJ4VK.js → briefing-KXTNRYL6.js}

@@ -18,7 +18,7 @@ import {
 } from "./chunk-YY66LFZF.js";
 import {
   dispatchFromCli
-} from "./chunk-L3W2NVWA.js";
+} from "./chunk-VBTCULVY.js";
 import "./chunk-6N6WGLXE.js";
 import "./chunk-4VASFLUW.js";
 import {
@@ -28,10 +28,10 @@ import "./chunk-QKMBWYAS.js";
 import {
   cliError,
   cliOutput
-} from "./chunk-4RGSNUUP.js";
+} from "./chunk-6UGBRRKY.js";
 import "./chunk-6JSJNYH2.js";
 import "./chunk-D7BAQNV2.js";
-import "./chunk-GAMCDPPS.js";
+import "./chunk-BFRYJSL5.js";
 
 // packages/cleo/src/cli/commands/briefing.ts
 import { pushWarning } from "@cleocode/core/output";
@@ -210,4 +210,4 @@ var briefingCommand = defineCommand({
 export {
   briefingCommand
 };
-//# sourceMappingURL=briefing-KZULJ4VK.js.map
+//# sourceMappingURL=briefing-KXTNRYL6.js.map