@clear-capabilities/agentic-security-scanner 0.74.0

package/src/sca/dep-confusion.js

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+// 0.9.0 Feat-15: Dependency confusion + typosquat detection (Levenshtein distance against top-1000 npm/PyPI packages).
+//
+// (a) Typosquat: Levenshtein distance 1–2 from a popular package.
+// (b) Confusion: internal-scoped names (`@your-org/...`) that also appear on the
+//     public registry — declared via .agentic-security/internal-scopes.yml.
+//
+// Both checks are local-first; we only consult OSV (already cached) for the
+// confusion check when an internal-scoped name appears in the public registry.
+
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import * as yaml from 'js-yaml';
+import { createRequire } from 'node:module';
+
+const _require = createRequire(import.meta.url);
+const _POPULAR = (() => {
+  try {
+    const raw = _require('./popular-packages.json');
+    const out = {};
+    for (const [k, v] of Object.entries(raw)) {
+      if (k.startsWith('_')) continue;
+      out[k] = new Set(v.map(s => s.toLowerCase()));
+    }
+    return out;
+  } catch (_) {
+    return null;
+  }
+})();
+
+// Levenshtein distance with early-exit at maxDistance.
+export function levenshtein(a, b, maxDistance = 2) {
+  if (a === b) return 0;
+  if (Math.abs(a.length - b.length) > maxDistance) return maxDistance + 1;
+  if (a.length === 0) return b.length;
+  if (b.length === 0) return a.length;
+  let prev = Array(b.length + 1).fill(0).map((_, i) => i);
+  let curr = Array(b.length + 1).fill(0);
+  for (let i = 1; i <= a.length; i++) {
+    curr[0] = i;
+    let rowMin = i;
+    for (let j = 1; j <= b.length; j++) {
+      const cost = a[i - 1] === b[j - 1] ? 0 : 1;
+      curr[j] = Math.min(curr[j - 1] + 1, prev[j] + 1, prev[j - 1] + cost);
+      if (curr[j] < rowMin) rowMin = curr[j];
+    }
+    if (rowMin > maxDistance) return maxDistance + 1;
+    [prev, curr] = [curr, prev];
+  }
+  return prev[b.length];
+}
+
+function _loadInternalScopes(scanRoot) {
+  if (!scanRoot) return [];
+  for (const name of ['internal-scopes.yml', 'internal-scopes.yaml']) {
+    const p = path.join(scanRoot, '.agentic-security', name);
+    if (!fs.existsSync(p)) continue;
+    try {
+      const doc = yaml.load(fs.readFileSync(p, 'utf8'));
+      return Array.isArray(doc?.scopes) ? doc.scopes : [];
+    } catch (_) { return []; }
+  }
+  return [];
+}
+
+function _eqEcosystemMap(eco) {
+  // Engine uses 'npm' / 'pypi' / etc. — map to popular-packages keys.
+  if (eco === 'pypi' || eco === 'pip') return 'pypi';
+  return eco;
+}
+
+// Run typosquat + confusion checks against a components[] array.
+// Returns logicVulns-shaped findings (kind: 'sca').
+export function detectDepConfusion(components, scanRoot) {
+  if (!_POPULAR) return [];
+  const internalScopes = _loadInternalScopes(scanRoot);
+  const findings = [];
+  const seen = new Set();
+  for (const c of components || []) {
+    if (!c.name) continue;
+    const eco = _eqEcosystemMap(c.ecosystem);
+    const popularSet = _POPULAR[eco];
+    if (!popularSet) continue;
+    const lowerName = c.name.toLowerCase();
+    // (1) Typosquat — only run if the dep is NOT itself in the popular set
+    if (!popularSet.has(lowerName)) {
+      let bestMatch = null, bestDist = 3;
+      for (const popular of popularSet) {
+        const d = levenshtein(lowerName, popular, 2);
+        if (d > 0 && d <= 2 && d < bestDist) { bestMatch = popular; bestDist = d; }
+      }
+      if (bestMatch) {
+        const id = `dep-confusion:${c.ecosystem}:${c.name}@${c.version}:typosquat`;
+        if (!seen.has(id)) {
+          seen.add(id);
+          findings.push({
+            id, kind: 'sca', severity: bestDist === 1 ? 'critical' : 'high',
+            vuln: `Possible typosquat: "${c.name}" (1–2 chars from "${bestMatch}")`,
+            cwe: 'CWE-1357', stride: 'Tampering',
+            file: c.filePath || 'package.json', line: 0,
+            snippet: `${c.ecosystem}:${c.name}@${c.version}`,
+            fix: `Verify "${c.name}" is the package you actually meant. The popular package "${bestMatch}" is ${bestDist} edit(s) away — typosquat malware commonly registers names like this. Double-check the publisher, weekly downloads, and recent changes before keeping this dep.`,
+            package: c.name, version: c.version, ecosystem: c.ecosystem, levenshteinDistance: bestDist,
+          });
+        }
+      }
+    }
+    // (2) Internal-scope confusion — declared scope, but published on public registry
+    for (const scope of internalScopes) {
+      const sc = String(scope).toLowerCase();
+      if (lowerName.startsWith(sc + '/') || lowerName === sc) {
+        // Heuristic: if this dep was successfully resolved by OSV (i.e. has CVE data),
+        // OR if the registry returned ANY metadata for it, it's published publicly —
+        // which is the threat. We approximate "published publicly" by
+        // assuming if components.parseManifests returned the dep, the user expected it
+        // to be installable; the OSV / queryRegistries pipeline upstream determines
+        // public availability. Here we just flag it for review.
+        const id = `dep-confusion:${c.ecosystem}:${c.name}@${c.version}:scope`;
+        if (!seen.has(id)) {
+          seen.add(id);
+          findings.push({
+            id, kind: 'sca', severity: 'high',
+            vuln: `Internal-scoped package on public registry: "${c.name}"`,
+            cwe: 'CWE-1357', stride: 'Tampering',
+            file: c.filePath || 'package.json', line: 0,
+            snippet: `${c.ecosystem}:${c.name}@${c.version}`,
+            fix: `"${c.name}" matches your internal scope "${scope}", but is being resolved from the public registry. Confirm whether your private registry is configured (e.g. .npmrc / .pypirc) — if a public copy exists with the same name an attacker could publish malicious updates and your installs would silently switch.`,
+            package: c.name, version: c.version, ecosystem: c.ecosystem,
+          });
+        }
+      }
+    }
+  }
+  return findings;
+}

package/src/sca/index.js

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+// SCA submodule view of the engine — dependency vulnerability + reachability.
+export {
+  parseManifests, queryOSV, queryRegistries,
+  buildReachabilitySet, computeAttackPathComponents,
+  markUsedVulnFunctions, VULN_FUNCTION_HINTS,
+} from '../engine.js';

package/src/sca/popular-packages.json

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+{
+  "_doc": "Top-popular packages used as the typosquat reference set. A dep with Levenshtein distance 1-2 from any of these is flagged as a potential typosquat.",
+  "_format": "ecosystem -> sorted array of package names",
+
+  "npm": [
+    "lodash", "react", "vue", "angular", "express", "next", "axios", "moment", "jquery",
+    "underscore", "request", "chalk", "commander", "yargs", "minimist", "dotenv",
+    "jsonwebtoken", "bcrypt", "bcryptjs", "passport", "uuid", "debug", "ws", "node-fetch",
+    "cookie", "body-parser", "cors", "helmet", "morgan", "redis", "ioredis", "mongoose",
+    "mongodb", "pg", "mysql", "mysql2", "sequelize", "knex", "prisma", "typeorm",
+    "fs-extra", "glob", "rimraf", "mkdirp", "fast-glob", "chokidar", "anymatch",
+    "lodash.merge", "lodash.set", "lodash.get", "lodash.uniq", "lodash.clonedeep",
+    "react-dom", "react-router", "react-router-dom", "redux", "react-redux",
+    "vue-router", "vuex", "pinia", "@reduxjs/toolkit",
+    "typescript", "ts-node", "tsx", "esbuild", "vite", "webpack", "rollup", "parcel",
+    "babel", "@babel/core", "@babel/preset-env", "@babel/preset-react", "@babel/preset-typescript",
+    "eslint", "prettier", "husky", "lint-staged", "stylelint",
+    "jest", "mocha", "chai", "ava", "tap", "vitest", "cypress", "playwright", "puppeteer",
+    "supertest", "sinon", "nock", "msw",
+    "openai", "anthropic", "@anthropic-ai/sdk", "langchain", "@ai-sdk/openai",
+    "stripe", "twilio", "sendgrid", "mailgun", "@sentry/node", "newrelic", "datadog",
+    "fastify", "koa", "hapi", "nestjs", "@nestjs/core",
+    "yarn", "pnpm", "npm-check-updates", "depcheck", "snyk", "audit-ci"
+  ],
+  "pypi": [
+    "requests", "django", "flask", "fastapi", "starlette", "uvicorn", "gunicorn",
+    "numpy", "pandas", "scipy", "matplotlib", "seaborn", "plotly", "bokeh",
+    "pytest", "unittest", "nose", "tox", "coverage",
+    "celery", "redis", "kombu", "pika",
+    "sqlalchemy", "psycopg2", "pymongo", "asyncpg", "aioredis", "aiomysql",
+    "boto3", "botocore", "google-cloud-storage", "azure-storage-blob",
+    "openai", "anthropic", "langchain", "langgraph", "transformers", "torch", "tensorflow",
+    "scikit-learn", "xgboost", "lightgbm",
+    "pillow", "opencv-python", "lxml", "beautifulsoup4", "selenium", "playwright",
+    "pyyaml", "toml", "click", "rich", "typer", "pydantic", "marshmallow",
+    "cryptography", "pyjwt", "bcrypt", "argon2-cffi", "passlib",
+    "twisted", "tornado", "aiohttp", "httpx", "urllib3",
+    "jinja2", "mako", "chameleon",
+    "jupyter", "ipython", "notebook", "jupyterlab"
+  ]
+}

package/src/sca/sarif-ingest.js

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+// 0.7.0 Feat-7: SARIF 2.1.0 ingest — normalizes and merges external scanner findings into unified report.
+//
+// Reads SARIF 2.1.0 from gitleaks / Semgrep / Bandit / Trivy / Checkov / SonarQube
+// and merges into our scan. Findings are normalised + deduplicated against our
+// own findings via a fingerprint of (CWE/CVE, file, line ±2, rule), and a
+// `sources[]` array is added to the merged finding so attribution is preserved.
+//
+// Pure ESM, no external deps. Reads JSON only — no schema validation library.
+
+import * as fs from 'node:fs';
+import * as crypto from 'node:crypto';
+
+// Tool-name → (kind, defaultSeverityIfUnset)
+const TOOL_PROFILE = {
+  'semgrep':       { kind: 'sast',   defSev: 'medium' },
+  'opengrep':      { kind: 'sast',   defSev: 'medium' },
+  'bandit':        { kind: 'sast',   defSev: 'medium' },
+  'eslint':        { kind: 'sast',   defSev: 'low' },
+  'sonarqube':     { kind: 'sast',   defSev: 'medium' },
+  'codeql':        { kind: 'sast',   defSev: 'high' },
+  'gitleaks':      { kind: 'secret', defSev: 'high' },
+  'trufflehog':    { kind: 'secret', defSev: 'high' },
+  'detect-secrets':{ kind: 'secret', defSev: 'high' },
+  'trivy':         { kind: 'sca',    defSev: 'high' },
+  'grype':         { kind: 'sca',    defSev: 'high' },
+  'osv-scanner':   { kind: 'sca',    defSev: 'high' },
+  'checkov':       { kind: 'iac',    defSev: 'medium' },
+  'tfsec':         { kind: 'iac',    defSev: 'medium' },
+  'kics':          { kind: 'iac',    defSev: 'medium' },
+};
+
+// SARIF level → our severity tier
+const LEVEL_MAP = { error: 'critical', warning: 'high', note: 'medium', none: 'low' };
+
+// Normalize a tool name into a TOOL_PROFILE key (case + version-agnostic)
+function _toolKey(rawName) {
+  if (!rawName) return null;
+  const n = String(rawName).toLowerCase().replace(/[^a-z0-9-]/g, '');
+  for (const k of Object.keys(TOOL_PROFILE)) if (n.includes(k)) return k;
+  return null;
+}
+
+function _fingerprint(file, line, vuln, cwe) {
+  // Bucketed line (±2) so that off-by-one rule reports merge correctly.
+  const bucket = Math.floor((line || 0) / 2) * 2;
+  const key = `${file}:${bucket}:${(cwe || '').toUpperCase()}:${(vuln || '').replace(/\W+/g, '_').toLowerCase()}`;
+  return crypto.createHash('sha256').update(key).digest('hex').slice(0, 16);
+}
+
+function _extractCWE(rule) {
+  // SARIF rules can carry CWE in `properties.tags`, `properties.cwe`, or `helpUri`.
+  const tags = rule?.properties?.tags || [];
+  for (const t of tags) {
+    const m = String(t).match(/CWE-?(\d+)/i);
+    if (m) return `CWE-${m[1]}`;
+  }
+  if (rule?.properties?.cwe) {
+    const m = String(rule.properties.cwe).match(/(\d+)/);
+    if (m) return `CWE-${m[1]}`;
+  }
+  if (rule?.helpUri) {
+    const m = rule.helpUri.match(/cwe\.mitre\.org\/data\/definitions\/(\d+)/i);
+    if (m) return `CWE-${m[1]}`;
+  }
+  return null;
+}
+
+function _extractCVE(result) {
+  // Trivy / Grype / osv-scanner put CVE in ruleId or properties.
+  const id = result?.ruleId || '';
+  const m = id.match(/(CVE-\d{4}-\d{4,7})/i);
+  if (m) return m[1].toUpperCase();
+  const tags = result?.properties?.tags || [];
+  for (const t of tags) {
+    const tm = String(t).match(/(CVE-\d{4}-\d{4,7})/i);
+    if (tm) return tm[1].toUpperCase();
+  }
+  return null;
+}
+
+// Convert a single SARIF result + its run context into our normalized finding.
+function _resultToFinding(result, run, toolKey, defSev) {
+  const loc = result.locations?.[0]?.physicalLocation;
+  const file = loc?.artifactLocation?.uri || result?.fingerprints?.path || '(unknown)';
+  const line = loc?.region?.startLine || 0;
+  const ruleId = result.ruleId || '';
+  const rule = (run.tool?.driver?.rules || []).find(r => r.id === ruleId);
+  const message = result.message?.text || rule?.fullDescription?.text || rule?.shortDescription?.text || ruleId;
+  const sev = LEVEL_MAP[result.level] || defSev;
+  const cwe = _extractCWE(rule || result);
+  const cve = _extractCVE(result);
+  const profile = TOOL_PROFILE[toolKey] || { kind: 'sast', defSev: 'medium' };
+  return {
+    file: file.replace(/^file:\/\//, ''),
+    line,
+    severity: sev,
+    vuln: cve ? `${cve}: ${message}`.slice(0, 240) : message.slice(0, 240),
+    cwe,
+    cve,
+    kind: profile.kind,
+    ruleId,
+    snippet: result.locations?.[0]?.physicalLocation?.contextRegion?.snippet?.text
+          || result.locations?.[0]?.physicalLocation?.region?.snippet?.text
+          || '',
+    sources: [run.tool?.driver?.name || toolKey],
+  };
+}
+
+// Load and parse a SARIF file. Returns an array of normalized findings.
+export function ingestSARIFFile(filePath) {
+  let raw;
+  try { raw = fs.readFileSync(filePath, 'utf8'); }
+  catch (e) { throw new Error(`Cannot read SARIF file ${filePath}: ${e.message}`); }
+  let doc;
+  try { doc = JSON.parse(raw); }
+  catch (e) { throw new Error(`Invalid JSON in SARIF file ${filePath}: ${e.message}`); }
+  if (!doc || !Array.isArray(doc.runs)) {
+    throw new Error(`Not a SARIF document (missing runs[]): ${filePath}`);
+  }
+  const out = [];
+  for (const run of doc.runs) {
+    const toolName = run.tool?.driver?.name;
+    const toolKey = _toolKey(toolName);
+    const profile = TOOL_PROFILE[toolKey] || { kind: 'sast', defSev: 'medium' };
+    for (const result of (run.results || [])) {
+      try { out.push(_resultToFinding(result, run, toolKey || (toolName||'').toLowerCase(), profile.defSev)); }
+      catch (_) {}
+    }
+  }
+  return out;
+}
+
+// Merge an array of external findings into the scan result. Mutates `scan` in place.
+// Behaviour:
+//   - Findings whose fingerprint matches an existing scan.findings entry have their
+//     source tool name appended to scan.findings[i].sources[] and (if the external
+//     finding's severity is higher) the existing severity is bumped.
+//   - New findings (no match) are appended to scan.findings, scan.secrets, or
+//     scan.supplyChain depending on `kind`.
+export function mergeSARIFFindings(scan, externals) {
+  // Index existing findings by fingerprint
+  const existingFP = new Map();
+  for (const f of (scan.findings || [])) {
+    const fp = _fingerprint((f.file||'').split(' -> ').pop(), f.line||f.source?.line||f.sink?.line||0, f.vuln||f.type, f.cwe);
+    existingFP.set(fp, f);
+  }
+  let merged = 0, added = 0;
+  const SEV_RANK = { critical: 4, high: 3, medium: 2, low: 1, info: 0 };
+  for (const ext of externals) {
+    const fp = _fingerprint(ext.file, ext.line, ext.vuln, ext.cwe);
+    const existing = existingFP.get(fp);
+    if (existing) {
+      existing.sources = Array.from(new Set([...(existing.sources || ['agentic-security']), ...ext.sources]));
+      // Bump severity if the external tool reported higher
+      if ((SEV_RANK[ext.severity] || 0) > (SEV_RANK[existing.severity] || 0)) {
+        existing.severity = ext.severity;
+      }
+      merged++;
+      continue;
+    }
+    // Append as new finding into the right bucket
+    const id = `sarif-ingest:${fp}`;
+    const newFinding = {
+      id, kind: ext.kind, severity: ext.severity, vuln: ext.vuln,
+      cwe: ext.cwe, file: ext.file, line: ext.line, snippet: ext.snippet || '',
+      sources: ext.sources, parser: 'SARIF',
+    };
+    if (ext.kind === 'secret') (scan.secrets = scan.secrets || []).push(newFinding);
+    else if (ext.kind === 'sca') (scan.supplyChain = scan.supplyChain || []).push({ ...newFinding, type: 'vulnerable_dep' });
+    else if (ext.kind === 'iac' || ext.kind === 'sast' || ext.kind === 'logic') (scan.findings = scan.findings || []).push(newFinding);
+    added++;
+  }
+  return { merged, added };
+}
+
+export function ingestAndMerge(scan, sarifPaths) {
+  let totalMerged = 0, totalAdded = 0;
+  for (const p of sarifPaths) {
+    let externals;
+    try { externals = ingestSARIFFile(p); }
+    catch (e) { /* swallow per-file errors so one bad SARIF doesn't break the run */ continue; }
+    const { merged, added } = mergeSARIFFindings(scan, externals);
+    totalMerged += merged;
+    totalAdded += added;
+  }
+  return { merged: totalMerged, added: totalAdded };
+}

package/src/sca/vuln-function-hints.json

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+{
+  "_doc": "package -> [vulnerable function names]. Used by markUsedVulnFunctions and _annotateFunctionReachability to determine whether developer code actually calls a vulnerable symbol in a flagged dep. Reachability analysis typically eliminates ~97% of false-positive SCA noise.",
+  "_format": "key: package name (npm/PyPI casing); value: array of function names known-vulnerable in at least one CVE for that package",
+
+  "lodash":          ["merge", "defaultsDeep", "set", "setWith", "zipObjectDeep", "template", "templateSettings"],
+  "jsonwebtoken":    ["decode", "verify", "sign"],
+  "marked":          ["parse", "marked", "Lexer"],
+  "ejs":             ["render", "renderFile", "compile"],
+  "node-fetch":      ["default", "fetch"],
+  "xml2js":          ["parseString", "parseStringPromise"],
+  "js-yaml":         ["load", "loadAll"],
+  "minimist":        ["parse"],
+  "yargs-parser":    ["parse"],
+  "ms":              ["ms"],
+  "moment":          ["moment", "duration"],
+  "axios":           ["get", "post", "request", "create"],
+  "express":         ["use", "static", "json"],
+  "cookie":          ["parse", "serialize"],
+  "qs":              ["parse", "stringify"],
+  "tough-cookie":    ["CookieJar", "Cookie"],
+  "ws":              ["createServer", "Server"],
+  "http-proxy":      ["createProxyServer"],
+  "send":            ["send", "mime"],
+  "serve-static":    ["serveStatic"],
+  "tar":             ["x", "extract", "Parse"],
+  "tar-fs":          ["extract", "x"],
+  "node-tar":        ["x", "extract", "Parse"],
+  "decompress":      ["decompress"],
+  "fast-xml-parser": ["parse", "XMLParser"],
+  "handlebars":      ["compile", "registerHelper", "SafeString"],
+  "pug":             ["compile", "render", "renderFile"],
+  "mustache":        ["render", "to_html"],
+  "dompurify":       ["sanitize"],
+  "validator":       ["isURL", "isEmail", "escape"],
+  "sanitize-html":   ["sanitizeHtml"],
+  "shell-quote":     ["parse", "quote"],
+  "shelljs":         ["exec", "config"],
+  "express-jwt":     ["expressJwt"],
+  "passport":        ["authenticate", "use"],
+  "passport-jwt":    ["Strategy"],
+  "bcrypt":          ["compare", "hash", "compareSync", "hashSync"],
+  "bcryptjs":        ["compare", "hash", "compareSync", "hashSync"],
+  "crypto-js":       ["AES", "DES", "MD5", "SHA1"],
+  "node-forge":      ["pki", "rsa", "asn1", "util"],
+  "openssl":         ["createCipher", "createDecipher"],
+  "request":         ["get", "post", "request"],
+  "got":             ["get", "post"],
+  "ssh2":            ["Client", "Server"],
+  "mongodb":         ["MongoClient", "ObjectId"],
+  "mongoose":        ["model", "Schema"],
+  "sqlite3":         ["Database", "run", "exec"],
+  "pg":              ["Client", "Pool", "query"],
+  "mysql":           ["createConnection", "createPool", "query"],
+  "mysql2":          ["createConnection", "createPool", "query"],
+  "redis":           ["createClient"],
+  "ioredis":         ["Redis"],
+  "multer":          ["diskStorage", "memoryStorage"],
+  "formidable":      ["IncomingForm"],
+  "busboy":          ["Busboy"],
+  "fast-redact":     ["fastRedact"],
+  "pino":            ["pino"],
+  "winston":         ["createLogger"],
+  "ansi-html":       ["ansiHTML"],
+  "underscore":      ["template", "templateSettings"],
+  "vm2":             ["VM", "NodeVM"],
+  "vm":              ["runInNewContext", "runInThisContext", "Script"],
+  "object-path":     ["set", "get", "del"],
+  "set-value":       ["set"],
+  "deepmerge":       ["all"],
+  "merge":           ["recursive", "merge"],
+  "got-resolve-fn":  ["resolveAlpnUsingNetwork"],
+  "follow-redirects":["http", "https"],
+
+  "_python_block_": "Python packages — keyed identically; engine ignores subsection markers",
+  "django":          ["Template", "render"],
+  "flask":           ["render_template_string", "send_file"],
+  "jinja2":          ["Template", "render", "Environment"],
+  "pyyaml":          ["load", "load_all"],
+  "pyjwt":           ["decode", "encode"],
+  "requests":        ["get", "post", "request"],
+  "urllib3":         ["urlopen", "PoolManager"],
+  "lxml":            ["fromstring", "parse"],
+  "pillow":          ["open", "Image"],
+  "cryptography":    ["Fernet", "primitives"],
+  "paramiko":        ["SSHClient", "AutoAddPolicy"],
+  "sqlparse":        ["parse"],
+  "psycopg2":        ["connect"],
+  "sqlalchemy":      ["create_engine", "text"]
+}

package/src/secrets/index.js

@@ -0,0 +1,4 @@
+// Secrets submodule view of the engine — credential + entropy + TODO scanning.
+export {
+  scanCredentials, scanEntropySecrets, scanTodosNearSecurity,
+} from '../engine.js';