@claudexor/workspace 4.2.0 → 4.3.1

package/dist/continuation-sources.d.ts

@@ -24,7 +24,7 @@ export declare function retainedEnvelopeInChain(sources: ContinuationSources): {
         dirty_policy: "refuse" | "snapshot";
         created_at: string;
     };
-    cause: "cancelled" | "context_exhausted" | "host_restart" | "input_required" | "other" | "pinned_limit" | "pool_exhausted" | "transport" | "vendor_limit" | "wall_clock" | null;
+    cause: "cancelled" | "context_exhausted" | "host_restart" | "input_required" | "other" | "permission_denied" | "pinned_limit" | "pool_exhausted" | "transport" | "vendor_limit" | "wall_clock" | null;
     retained_at: string | null;
     bytes: number | null;
 } | null;

package/dist/git-nested-repositories.d.ts

@@ -0,0 +1,18 @@
+/**
+ * Untracked nested repositories that no `.gitmodules` entry declares, as
+ * worktree-top-relative paths: `git ls-files --others` names each one with a
+ * trailing slash because Git never descends into another repository, and
+ * `--full-name` keeps the names top-relative when the capture runs in a
+ * subdirectory, matching both the patch paths and the `:(top)` exclusions.
+ * Read against the caller's scratch index (`env`), so the set is "not in the
+ * base tree", never the user's staging state.
+ *
+ * A patch cannot carry another repository (Git records a commit link, or
+ * refuses a repository without a commit outright), so callers leave these out
+ * of their `git add` with `nestedRepositoryExcludes` instead of failing.
+ */
+export declare function untrackedNestedRepositories(repo: string, env: Record<string, string>, pathspec: string[], label: string): Promise<string[]>;
+/** Exclusion pathspecs for `untrackedNestedRepositories` paths: top-relative
+ * and literal, so a name with glob characters never swallows a sibling. */
+export declare function nestedRepositoryExcludes(paths: string[]): string[];
+//# sourceMappingURL=git-nested-repositories.d.ts.map

package/dist/git-nested-repositories.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"git-nested-repositories.d.ts","sourceRoot":"","sources":["../src/git-nested-repositories.ts"],"names":[],"mappings":"AAsCA;;;;;;;;;;;;GAYG;AACH,wBAAsB,2BAA2B,CAC/C,IAAI,EAAE,MAAM,EACZ,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EAC3B,QAAQ,EAAE,MAAM,EAAE,EAClB,KAAK,EAAE,MAAM,GACZ,OAAO,CAAC,MAAM,EAAE,CAAC,CAgBnB;AAED;2EAC2E;AAC3E,wBAAgB,wBAAwB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAElE"}

package/dist/git-nested-repositories.js

@@ -0,0 +1,62 @@
+import { WorkspaceError } from "@claudexor/core";
+import { gitEnv } from "./git-run.js";
+/** Submodule paths the working tree's own `.gitmodules` declares, relative to
+ * the worktree top (where the file lives, whatever directory the capture runs
+ * in): a submodule the candidate added on purpose is captured as its commit
+ * link, as before. No file, or no declared path, declares nothing. The file is
+ * named relative to the capture directory (`--show-cdup` is only `../`
+ * steps), so no worktree path, whatever its spelling, is parsed here. */
+async function declaredSubmodulePaths(repo, env) {
+    const cdup = await gitEnv(repo, ["rev-parse", "--show-cdup"], env);
+    if (cdup.code !== 0)
+        return new Set();
+    const listed = await gitEnv(repo, [
+        "config",
+        "--file",
+        `${cdup.stdout.trim()}.gitmodules`,
+        "--null",
+        "--get-regexp",
+        "^submodule\\..*\\.path$",
+    ], env);
+    if (listed.code !== 0)
+        return new Set();
+    // --null: each entry is "key\nvalue\0", so a path keeps its spaces and newlines.
+    return new Set(listed.stdout
+        .split("\0")
+        .filter((entry) => entry.includes("\n"))
+        .map((entry) => entry.slice(entry.indexOf("\n") + 1))
+        .filter((path) => path.length > 0));
+}
+/**
+ * Untracked nested repositories that no `.gitmodules` entry declares, as
+ * worktree-top-relative paths: `git ls-files --others` names each one with a
+ * trailing slash because Git never descends into another repository, and
+ * `--full-name` keeps the names top-relative when the capture runs in a
+ * subdirectory, matching both the patch paths and the `:(top)` exclusions.
+ * Read against the caller's scratch index (`env`), so the set is "not in the
+ * base tree", never the user's staging state.
+ *
+ * A patch cannot carry another repository (Git records a commit link, or
+ * refuses a repository without a commit outright), so callers leave these out
+ * of their `git add` with `nestedRepositoryExcludes` instead of failing.
+ */
+export async function untrackedNestedRepositories(repo, env, pathspec, label) {
+    const listed = await gitEnv(repo, ["ls-files", "--others", "--exclude-standard", "--full-name", "-z", "--", ...pathspec], env);
+    if (listed.code !== 0) {
+        throw new WorkspaceError(`${label} could not list untracked files: ${listed.stderr.trim()}`);
+    }
+    const nested = listed.stdout
+        .split("\0")
+        .filter((entry) => entry.endsWith("/"))
+        .map((entry) => entry.slice(0, -1));
+    if (nested.length === 0)
+        return [];
+    const declared = await declaredSubmodulePaths(repo, env);
+    return nested.filter((path) => !declared.has(path));
+}
+/** Exclusion pathspecs for `untrackedNestedRepositories` paths: top-relative
+ * and literal, so a name with glob characters never swallows a sibling. */
+export function nestedRepositoryExcludes(paths) {
+    return paths.map((path) => `:(exclude,top,literal)${path}`);
+}
+//# sourceMappingURL=git-nested-repositories.js.map

package/dist/git-nested-repositories.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"git-nested-repositories.js","sourceRoot":"","sources":["../src/git-nested-repositories.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AAEtC;;;;;yEAKyE;AACzE,KAAK,UAAU,sBAAsB,CACnC,IAAY,EACZ,GAA2B;IAE3B,MAAM,IAAI,GAAG,MAAM,MAAM,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,aAAa,CAAC,EAAE,GAAG,CAAC,CAAC;IACnE,IAAI,IAAI,CAAC,IAAI,KAAK,CAAC;QAAE,OAAO,IAAI,GAAG,EAAE,CAAC;IACtC,MAAM,MAAM,GAAG,MAAM,MAAM,CACzB,IAAI,EACJ;QACE,QAAQ;QACR,QAAQ;QACR,GAAG,IAAI,CAAC,MAAM,CAAC,IAAI,EAAE,aAAa;QAClC,QAAQ;QACR,cAAc;QACd,yBAAyB;KAC1B,EACD,GAAG,CACJ,CAAC;IACF,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC;QAAE,OAAO,IAAI,GAAG,EAAE,CAAC;IACxC,iFAAiF;IACjF,OAAO,IAAI,GAAG,CACZ,MAAM,CAAC,MAAM;SACV,KAAK,CAAC,IAAI,CAAC;SACX,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;SACvC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;SACpD,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CACrC,CAAC;AACJ,CAAC;AAED;;;;;;;;;;;;GAYG;AACH,MAAM,CAAC,KAAK,UAAU,2BAA2B,CAC/C,IAAY,EACZ,GAA2B,EAC3B,QAAkB,EAClB,KAAa;IAEb,MAAM,MAAM,GAAG,MAAM,MAAM,CACzB,IAAI,EACJ,CAAC,UAAU,EAAE,UAAU,EAAE,oBAAoB,EAAE,aAAa,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,QAAQ,CAAC,EACtF,GAAG,CACJ,CAAC;IACF,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC,EAAE,CAAC;QACtB,MAAM,IAAI,cAAc,CAAC,GAAG,KAAK,oCAAoC,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IAC/F,CAAC;IACD,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM;SACzB,KAAK,CAAC,IAAI,CAAC;SACX,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;SACtC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IACtC,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACnC,MAAM,QAAQ,GAAG,MAAM,sBAAsB,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IACzD,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;AACtD,CAAC;AAED;2EAC2E;AAC3E,MAAM,UAAU,wBAAwB,CAAC,KAAe;IACtD,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,yBAAyB,IAAI,EAAE,CAAC,CAAC;AAC9D,CAAC"}

package/dist/git-run.d.ts

@@ -0,0 +1,20 @@
+/** BYTE-FAITHFUL git capture: raw buffers, never readline — CR
+ * bytes in CRLF diff content survive, and no trailing newline is fabricated
+ * (trim-based consumers like revParse are unaffected: git ends its own
+ * output with \n). */
+export declare function git(repo: string, args: string[], input?: string): Promise<{
+    code: number | null;
+    stdout: string;
+    stderr: string;
+}>;
+/** `git` with extra environment (e.g. a scratch GIT_INDEX_FILE for snapshots). */
+export declare function gitEnv(repo: string, args: string[], env: Record<string, string>, input?: string): Promise<{
+    code: number | null;
+    stdout: string;
+    stderr: string;
+}>;
+/** Capture-time honesty: with --binary a payload-less "Binary files differ"
+ * stub should be impossible; if one appears anyway, fail AT CAPTURE with a
+ * typed error instead of shipping a patch that cannot apply. */
+export declare function assertNoBinaryStubs(diff: string, label: string): void;
+//# sourceMappingURL=git-run.d.ts.map

package/dist/git-run.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"git-run.d.ts","sourceRoot":"","sources":["../src/git-run.ts"],"names":[],"mappings":"AAOA;;;sBAGsB;AACtB,wBAAsB,GAAG,CACvB,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,MAAM,EAAE,EACd,KAAK,CAAC,EAAE,MAAM,GACb,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC,CAIlE;AAED,kFAAkF;AAClF,wBAAsB,MAAM,CAC1B,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,MAAM,EAAE,EACd,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EAC3B,KAAK,CAAC,EAAE,MAAM,GACb,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC,CAQlE;AAED;;gEAEgE;AAChE,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI,CAQrE"}

package/dist/git-run.js

@@ -0,0 +1,31 @@
+import { assertCaptureComplete, parseUnifiedDiff, runCaptureRaw, WorkspaceError, } from "@claudexor/core";
+/** BYTE-FAITHFUL git capture: raw buffers, never readline — CR
+ * bytes in CRLF diff content survive, and no trailing newline is fabricated
+ * (trim-based consumers like revParse are unaffected: git ends its own
+ * output with \n). */
+export async function git(repo, args, input) {
+    const r = await runCaptureRaw("git", ["-C", repo, ...args], { timeoutMs: 60_000, input });
+    assertCaptureComplete(r);
+    return r;
+}
+/** `git` with extra environment (e.g. a scratch GIT_INDEX_FILE for snapshots). */
+export async function gitEnv(repo, args, env, input) {
+    const r = await runCaptureRaw("git", ["-C", repo, ...args], {
+        timeoutMs: 60_000,
+        env,
+        input,
+    });
+    assertCaptureComplete(r);
+    return r;
+}
+/** Capture-time honesty: with --binary a payload-less "Binary files differ"
+ * stub should be impossible; if one appears anyway, fail AT CAPTURE with a
+ * typed error instead of shipping a patch that cannot apply. */
+export function assertNoBinaryStubs(diff, label) {
+    const stubs = parseUnifiedDiff(diff).files.filter((f) => f.binaryStub);
+    if (stubs.length > 0) {
+        const names = stubs.map((f) => f.newPath ?? f.oldPath ?? "(unknown)").join(", ");
+        throw new WorkspaceError(`${label} produced undeliverable binary stub(s) for: ${names}; the work product cannot be applied`);
+    }
+}
+//# sourceMappingURL=git-run.js.map

package/dist/git-run.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"git-run.js","sourceRoot":"","sources":["../src/git-run.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,qBAAqB,EACrB,gBAAgB,EAChB,aAAa,EACb,cAAc,GACf,MAAM,iBAAiB,CAAC;AAEzB;;;sBAGsB;AACtB,MAAM,CAAC,KAAK,UAAU,GAAG,CACvB,IAAY,EACZ,IAAc,EACd,KAAc;IAEd,MAAM,CAAC,GAAG,MAAM,aAAa,CAAC,KAAK,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC,CAAC;IAC1F,qBAAqB,CAAC,CAAC,CAAC,CAAC;IACzB,OAAO,CAAC,CAAC;AACX,CAAC;AAED,kFAAkF;AAClF,MAAM,CAAC,KAAK,UAAU,MAAM,CAC1B,IAAY,EACZ,IAAc,EACd,GAA2B,EAC3B,KAAc;IAEd,MAAM,CAAC,GAAG,MAAM,aAAa,CAAC,KAAK,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,EAAE;QAC1D,SAAS,EAAE,MAAM;QACjB,GAAG;QACH,KAAK;KACN,CAAC,CAAC;IACH,qBAAqB,CAAC,CAAC,CAAC,CAAC;IACzB,OAAO,CAAC,CAAC;AACX,CAAC;AAED;;gEAEgE;AAChE,MAAM,UAAU,mBAAmB,CAAC,IAAY,EAAE,KAAa;IAC7D,MAAM,KAAK,GAAG,gBAAgB,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC;IACvE,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACrB,MAAM,KAAK,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,IAAI,CAAC,CAAC,OAAO,IAAI,WAAW,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACjF,MAAM,IAAI,cAAc,CACtB,GAAG,KAAK,+CAA+C,KAAK,sCAAsC,CACnG,CAAC;IACJ,CAAC;AACH,CAAC"}

package/dist/git-transient-capture.d.ts

@@ -0,0 +1,30 @@
+import { CaptureOutputExceeded } from "@claudexor/core";
+/**
+ * Capture the current worktree against an exact base without writing its blobs
+ * into the user's Git object database. In-place harness output is untrusted
+ * until the secret fence has inspected the resulting patch; `snapshotTree`
+ * would otherwise leave a dangling raw-secret blob even when artifact
+ * persistence later refused the patch.
+ *
+ * Git still owns filename, mode, symlink, binary, ignored-file, and untracked
+ * semantics. A scratch index plus an isolated temporary object directory holds
+ * the candidate tree only for the duration of `git diff`; the real object
+ * directory is read-only through Git's alternates mechanism.
+ */
+export interface TransientDiffCapture {
+    captureIncomplete: boolean;
+    captureFailure?: CaptureOutputExceeded;
+    patch: string;
+    /** Changed binary files whose pre- or postimage holds secret-like bytes (or
+     * could not be read for inspection). The exact patch still carries their
+     * payload; a persisted COPY withholds it and discloses these paths (INV-062). */
+    binarySecretPaths: string[];
+    /** Untracked directories holding their own Git repository. A patch cannot
+     * carry another repository (Git would record a commit link, or refuse a
+     * repository without a commit), so they are left out of the capture and
+     * named here instead of failing the whole capture. */
+    excludedNestedRepositories?: string[];
+}
+export declare function captureWorkingTreeTransient(repo: string, baseSha: string, pathExcludes?: string[]): Promise<TransientDiffCapture>;
+export declare function diffWorkingTreeTransient(repo: string, baseSha: string, pathExcludes?: string[]): Promise<string>;
+//# sourceMappingURL=git-transient-capture.d.ts.map

package/dist/git-transient-capture.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"git-transient-capture.d.ts","sourceRoot":"","sources":["../src/git-transient-capture.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,qBAAqB,EAAoC,MAAM,iBAAiB,CAAC;AAQ1F;;;;;;;;;;;GAWG;AACH,MAAM,WAAW,oBAAoB;IACnC,iBAAiB,EAAE,OAAO,CAAC;IAC3B,cAAc,CAAC,EAAE,qBAAqB,CAAC;IACvC,KAAK,EAAE,MAAM,CAAC;IACd;;qFAEiF;IACjF,iBAAiB,EAAE,MAAM,EAAE,CAAC;IAC5B;;;0DAGsD;IACtD,0BAA0B,CAAC,EAAE,MAAM,EAAE,CAAC;CACvC;AAED,wBAAsB,2BAA2B,CAC/C,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,EACf,YAAY,GAAE,MAAM,EAAO,GAC1B,OAAO,CAAC,oBAAoB,CAAC,CA2H/B;AAED,wBAAsB,wBAAwB,CAC5C,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,EACf,YAAY,GAAE,MAAM,EAAO,GAC1B,OAAO,CAAC,MAAM,CAAC,CAIjB"}

package/dist/git-transient-capture.js

@@ -0,0 +1,130 @@
+import { mkdirSync, mkdtempSync, rmSync } from "node:fs";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import { CaptureOutputExceeded, parseUnifiedDiff, WorkspaceError } from "@claudexor/core";
+import { containsSecretLikeToken } from "@claudexor/util";
+import { nestedRepositoryExcludes, untrackedNestedRepositories, } from "./git-nested-repositories.js";
+import { assertNoBinaryStubs, git, gitEnv } from "./git-run.js";
+export async function captureWorkingTreeTransient(repo, baseSha, pathExcludes = []) {
+    const scratchDir = mkdtempSync(join(tmpdir(), "claudexor-transient-diff-"));
+    const objectDir = join(scratchDir, "objects");
+    const indexPath = join(scratchDir, "index");
+    mkdirSync(objectDir, { recursive: true, mode: 0o700 });
+    let primaryError;
+    try {
+        const actualObjects = await git(repo, [
+            "rev-parse",
+            "--path-format=absolute",
+            "--git-path",
+            "objects",
+        ]);
+        if (actualObjects.code !== 0 || !actualObjects.stdout.trim()) {
+            throw new WorkspaceError(`transient diff could not resolve Git objects: ${actualObjects.stderr.trim()}`);
+        }
+        const env = {
+            GIT_INDEX_FILE: indexPath,
+            GIT_OBJECT_DIRECTORY: objectDir,
+            // Git parses this as a path-list. C-style quoting keeps a legal `:` in a
+            // macOS path from becoming a separator (and escapes quotes/backslashes).
+            GIT_ALTERNATE_OBJECT_DIRECTORIES: JSON.stringify(actualObjects.stdout.trim()),
+            GIT_OPTIONAL_LOCKS: "0",
+        };
+        const read = await gitEnv(repo, ["read-tree", baseSha], env);
+        if (read.code !== 0) {
+            throw new WorkspaceError(`transient diff read-tree failed: ${read.stderr.trim()}`);
+        }
+        const nested = await untrackedNestedRepositories(repo, env, [".", ...pathExcludes], "transient diff");
+        const add = await gitEnv(repo, ["add", "-A", "--", ".", ...pathExcludes, ...nestedRepositoryExcludes(nested)], env);
+        if (add.code !== 0) {
+            throw new WorkspaceError(`transient diff add failed: ${add.stderr.trim()}`);
+        }
+        const writeTree = await gitEnv(repo, ["write-tree"], env);
+        if (writeTree.code !== 0 || !writeTree.stdout.trim()) {
+            throw new WorkspaceError(`transient diff write-tree failed: ${writeTree.stderr.trim()}`);
+        }
+        const diff = await gitEnv(repo, ["diff", "--binary", baseSha, writeTree.stdout.trim()], env);
+        if (diff.code !== 0) {
+            throw new WorkspaceError(`transient diff failed: ${diff.stderr.trim()}`);
+        }
+        assertNoBinaryStubs(diff.stdout, `transient git diff ${baseSha}`);
+        const flagged = new Set();
+        for (const file of parseUnifiedDiff(diff.stdout).files.filter((entry) => entry.binary)) {
+            const blobs = [
+                ...(!file.added && file.oldPath ? [{ tree: baseSha, path: file.oldPath }] : []),
+                ...(!file.deleted && file.newPath
+                    ? [{ tree: writeTree.stdout.trim(), path: file.newPath }]
+                    : []),
+            ];
+            for (const blob of blobs) {
+                try {
+                    const content = await gitEnv(repo, ["show", `${blob.tree}:${blob.path}`], env);
+                    // An unreadable blob is unprovable, so its payload is withheld too.
+                    if (content.code === 0 && !containsSecretLikeToken(content.stdout))
+                        continue;
+                }
+                catch (error) {
+                    // A complete compressed patch may carry a much larger blob. Failed
+                    // inspection withholds that payload, not the already complete patch.
+                    if (!(error instanceof CaptureOutputExceeded))
+                        throw error;
+                }
+                flagged.add(file.newPath ?? file.oldPath ?? blob.path);
+                break;
+            }
+        }
+        return {
+            patch: diff.stdout,
+            binarySecretPaths: [...flagged],
+            captureIncomplete: false,
+            ...(nested.length ? { excludedNestedRepositories: nested } : {}),
+        };
+    }
+    catch (error) {
+        primaryError = error;
+        if (error instanceof CaptureOutputExceeded)
+            return { patch: "", binarySecretPaths: [], captureIncomplete: true, captureFailure: error };
+        throw error;
+    }
+    finally {
+        // Unlike ordinary best-effort scratch cleanup, this directory may contain
+        // a candidate token blob. A cleanup failure is therefore terminal and must
+        // never be hidden behind the original capture result.
+        try {
+            rmSync(scratchDir, { recursive: true, force: true });
+        }
+        catch (cleanupError) {
+            // A cleanup failure is terminal on its own, but must not erase the typed
+            // capture error that explains the primary failure.
+            if (primaryError === undefined) {
+                const terminal = new WorkspaceError("transient diff scratch cleanup failed", {
+                    cause: cleanupError,
+                });
+                Object.defineProperty(terminal, "cleanupError", {
+                    value: cleanupError,
+                    enumerable: false,
+                });
+                throw terminal;
+            }
+            if (primaryError instanceof Error) {
+                try {
+                    Object.defineProperty(primaryError, "cleanupError", {
+                        value: cleanupError,
+                        enumerable: false,
+                    });
+                }
+                catch {
+                    // A frozen typed error cannot accept cleanup evidence. Preserve both
+                    // through a wrapper, keeping its machine facts and original cause.
+                    throw Object.assign(new WorkspaceError(primaryError.message, { cause: primaryError }), primaryError, { cleanupError });
+                }
+            }
+        }
+    }
+}
+export async function diffWorkingTreeTransient(repo, baseSha, pathExcludes = []) {
+    const captured = await captureWorkingTreeTransient(repo, baseSha, pathExcludes);
+    if (captured.captureIncomplete)
+        throw captured.captureFailure;
+    return captured.patch;
+}
+//# sourceMappingURL=git-transient-capture.js.map

package/dist/git-transient-capture.js.map

@@ -0,0 +1 @@
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package/dist/git.d.ts

@@ -1,15 +1,7 @@
-import { CaptureOutputExceeded } from "@claudexor/core";
 import { type EnsureGitRepositoryDependencies, type EnsureGitRepositoryResult } from "./git-initialization.js";
+export { git } from "./git-run.js";
+export { captureWorkingTreeTransient, diffWorkingTreeTransient } from "./git-transient-capture.js";
 export { GitBoundaryRootRefusedError, GitInitializationError, type EnsureGitRepositoryDependencies, type EnsureGitRepositoryResult, } from "./git-initialization.js";
-/** BYTE-FAITHFUL git capture: raw buffers, never readline — CR
- * bytes in CRLF diff content survive, and no trailing newline is fabricated
- * (trim-based consumers like revParse are unaffected: git ends its own
- * output with \n). */
-export declare function git(repo: string, args: string[], input?: string): Promise<{
-    code: number | null;
-    stdout: string;
-    stderr: string;
-}>;
 export declare function isGitRepo(repo: string): Promise<boolean>;
 export declare function revParse(repo: string, ref: string): Promise<string>;
 /**
@@ -48,29 +40,6 @@ export declare function snapshotTree(repo: string): Promise<string>;
  * `--binary`: binary changes carry an APPLYABLE payload instead of
  * degrading to a "Binary files differ" stub that silently loses the work. */
 export declare function diffTrees(repo: string, baseSha: string, endSha: string): Promise<string>;
-/**
- * Capture the current worktree against an exact base without writing its blobs
- * into the user's Git object database. In-place harness output is untrusted
- * until the secret fence has inspected the resulting patch; `snapshotTree`
- * would otherwise leave a dangling raw-secret blob even when artifact
- * persistence later refused the patch.
- *
- * Git still owns filename, mode, symlink, binary, ignored-file, and untracked
- * semantics. A scratch index plus an isolated temporary object directory holds
- * the candidate tree only for the duration of `git diff`; the real object
- * directory is read-only through Git's alternates mechanism.
- */
-export interface TransientDiffCapture {
-    captureIncomplete: boolean;
-    captureFailure?: CaptureOutputExceeded;
-    patch: string;
-    /** Changed binary files whose pre- or postimage holds secret-like bytes (or
-     * could not be read for inspection). The exact patch still carries their
-     * payload; a persisted COPY withholds it and discloses these paths (INV-062). */
-    binarySecretPaths: string[];
-}
-export declare function captureWorkingTreeTransient(repo: string, baseSha: string, pathExcludes?: string[]): Promise<TransientDiffCapture>;
-export declare function diffWorkingTreeTransient(repo: string, baseSha: string, pathExcludes?: string[]): Promise<string>;
 /**
  * Materialize a patch against an exact base in a scratch index and return the
  * resulting tree id. The live index and worktree are never consulted or

package/dist/git.d.ts.map

@@ -1 +1 @@
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package/dist/git.js

@@ -1,29 +1,14 @@
-import { existsSync, mkdirSync, mkdtempSync, rmSync } from "node:fs";
+import { existsSync, mkdtempSync, rmSync } from "node:fs";
 import { tmpdir } from "node:os";
 import { join } from "node:path";
-import { CaptureOutputExceeded, assertCaptureComplete, parseUnifiedDiff, runCaptureRaw, WorkspaceError, } from "@claudexor/core";
-import { containsSecretLikeToken, isClaudexorOwnedRuntimePath } from "@claudexor/util";
+import { assertCaptureComplete, runCaptureRaw, WorkspaceError } from "@claudexor/core";
+import { isClaudexorOwnedRuntimePath } from "@claudexor/util";
 import { initializeGitRepository, } from "./git-initialization.js";
+import { nestedRepositoryExcludes, untrackedNestedRepositories, } from "./git-nested-repositories.js";
+import { assertNoBinaryStubs, git, gitEnv } from "./git-run.js";
+export { git } from "./git-run.js";
+export { captureWorkingTreeTransient, diffWorkingTreeTransient } from "./git-transient-capture.js";
 export { GitBoundaryRootRefusedError, GitInitializationError, } from "./git-initialization.js";
-/** BYTE-FAITHFUL git capture: raw buffers, never readline — CR
- * bytes in CRLF diff content survive, and no trailing newline is fabricated
- * (trim-based consumers like revParse are unaffected: git ends its own
- * output with \n). */
-export async function git(repo, args, input) {
-    const r = await runCaptureRaw("git", ["-C", repo, ...args], { timeoutMs: 60_000, input });
-    assertCaptureComplete(r);
-    return r;
-}
-/** `git` with extra environment (e.g. a scratch GIT_INDEX_FILE for snapshots). */
-async function gitEnv(repo, args, env, input) {
-    const r = await runCaptureRaw("git", ["-C", repo, ...args], {
-        timeoutMs: 60_000,
-        env,
-        input,
-    });
-    assertCaptureComplete(r);
-    return r;
-}
 export async function isGitRepo(repo) {
     const r = await git(repo, ["rev-parse", "--is-inside-work-tree"]);
     return r.code === 0 && r.stdout.trim() === "true";
@@ -92,7 +77,11 @@ export async function stashCreate(repo) {
         // Bare add runs only against the scratch index. It respects the project's
         // own ignore policy without changing the live index. `.claudexor/` is not a
         // runtime exception in v2: tracked or untracked project config is user state.
-        const add = await gitEnv(repo, ["add", "-A"], env);
+        // An undeclared nested repository stays out, as in the candidate capture:
+        // `add` refuses one without a commit and would freeze one with a commit as
+        // a commit link (`:/` keeps the whole-tree scope of the bare add).
+        const nested = await untrackedNestedRepositories(repo, env, [":/"], "snapshot");
+        const add = await gitEnv(repo, ["add", "-A", ...(nested.length ? ["--", ":/", ...nestedRepositoryExcludes(nested)] : [])], env);
         if (add.code !== 0)
             throw new WorkspaceError(`snapshot add -A failed: ${add.stderr.trim()}`);
         const writeTree = await gitEnv(repo, ["write-tree"], env);
@@ -144,122 +133,6 @@ export async function diffTrees(repo, baseSha, endSha) {
     assertNoBinaryStubs(r.stdout, `git diff ${baseSha} ${endSha}`);
     return r.stdout;
 }
-export async function captureWorkingTreeTransient(repo, baseSha, pathExcludes = []) {
-    const scratchDir = mkdtempSync(join(tmpdir(), "claudexor-transient-diff-"));
-    const objectDir = join(scratchDir, "objects");
-    const indexPath = join(scratchDir, "index");
-    mkdirSync(objectDir, { recursive: true, mode: 0o700 });
-    let primaryError;
-    try {
-        const actualObjects = await git(repo, [
-            "rev-parse",
-            "--path-format=absolute",
-            "--git-path",
-            "objects",
-        ]);
-        if (actualObjects.code !== 0 || !actualObjects.stdout.trim()) {
-            throw new WorkspaceError(`transient diff could not resolve Git objects: ${actualObjects.stderr.trim()}`);
-        }
-        const env = {
-            GIT_INDEX_FILE: indexPath,
-            GIT_OBJECT_DIRECTORY: objectDir,
-            // Git parses this as a path-list. C-style quoting keeps a legal `:` in a
-            // macOS path from becoming a separator (and escapes quotes/backslashes).
-            GIT_ALTERNATE_OBJECT_DIRECTORIES: JSON.stringify(actualObjects.stdout.trim()),
-            GIT_OPTIONAL_LOCKS: "0",
-        };
-        const read = await gitEnv(repo, ["read-tree", baseSha], env);
-        if (read.code !== 0) {
-            throw new WorkspaceError(`transient diff read-tree failed: ${read.stderr.trim()}`);
-        }
-        const add = await gitEnv(repo, ["add", "-A", "--", ".", ...pathExcludes], env);
-        if (add.code !== 0) {
-            throw new WorkspaceError(`transient diff add failed: ${add.stderr.trim()}`);
-        }
-        const writeTree = await gitEnv(repo, ["write-tree"], env);
-        if (writeTree.code !== 0 || !writeTree.stdout.trim()) {
-            throw new WorkspaceError(`transient diff write-tree failed: ${writeTree.stderr.trim()}`);
-        }
-        const diff = await gitEnv(repo, ["diff", "--binary", baseSha, writeTree.stdout.trim()], env);
-        if (diff.code !== 0) {
-            throw new WorkspaceError(`transient diff failed: ${diff.stderr.trim()}`);
-        }
-        assertNoBinaryStubs(diff.stdout, `transient git diff ${baseSha}`);
-        const flagged = new Set();
-        for (const file of parseUnifiedDiff(diff.stdout).files.filter((entry) => entry.binary)) {
-            const blobs = [
-                ...(!file.added && file.oldPath ? [{ tree: baseSha, path: file.oldPath }] : []),
-                ...(!file.deleted && file.newPath
-                    ? [{ tree: writeTree.stdout.trim(), path: file.newPath }]
-                    : []),
-            ];
-            for (const blob of blobs) {
-                try {
-                    const content = await gitEnv(repo, ["show", `${blob.tree}:${blob.path}`], env);
-                    // An unreadable blob is unprovable, so its payload is withheld too.
-                    if (content.code === 0 && !containsSecretLikeToken(content.stdout))
-                        continue;
-                }
-                catch (error) {
-                    // A complete compressed patch may carry a much larger blob. Failed
-                    // inspection withholds that payload, not the already complete patch.
-                    if (!(error instanceof CaptureOutputExceeded))
-                        throw error;
-                }
-                flagged.add(file.newPath ?? file.oldPath ?? blob.path);
-                break;
-            }
-        }
-        return { patch: diff.stdout, binarySecretPaths: [...flagged], captureIncomplete: false };
-    }
-    catch (error) {
-        primaryError = error;
-        if (error instanceof CaptureOutputExceeded)
-            return { patch: "", binarySecretPaths: [], captureIncomplete: true, captureFailure: error };
-        throw error;
-    }
-    finally {
-        // Unlike ordinary best-effort scratch cleanup, this directory may contain
-        // a candidate token blob. A cleanup failure is therefore terminal and must
-        // never be hidden behind the original capture result.
-        try {
-            rmSync(scratchDir, { recursive: true, force: true });
-        }
-        catch (cleanupError) {
-            // A cleanup failure is terminal on its own, but must not erase the typed
-            // capture error that explains the primary failure.
-            if (primaryError === undefined) {
-                const terminal = new WorkspaceError("transient diff scratch cleanup failed", {
-                    cause: cleanupError,
-                });
-                Object.defineProperty(terminal, "cleanupError", {
-                    value: cleanupError,
-                    enumerable: false,
-                });
-                throw terminal;
-            }
-            if (primaryError instanceof Error) {
-                try {
-                    Object.defineProperty(primaryError, "cleanupError", {
-                        value: cleanupError,
-                        enumerable: false,
-                    });
-                }
-                catch {
-                    // A frozen typed error cannot accept cleanup evidence. Preserve both
-                    // through a wrapper, keeping its machine facts and original cause.
-                    throw Object.assign(new WorkspaceError(primaryError.message, { cause: primaryError }), primaryError, { cleanupError });
-                }
-            }
-        }
-    }
-}
-export async function diffWorkingTreeTransient(repo, baseSha, pathExcludes = []) {
-    const captured = await captureWorkingTreeTransient(repo, baseSha, pathExcludes);
-    if (captured.captureIncomplete)
-        throw captured.captureFailure;
-    return captured.patch;
-}
 /**
  * Materialize a patch against an exact base in a scratch index and return the
  * resulting tree id. The live index and worktree are never consulted or
@@ -296,16 +169,6 @@ export async function materializePatchTree(repo, baseSha, diff) {
         }
     }
 }
-/** Capture-time honesty: with --binary a payload-less "Binary files differ"
- * stub should be impossible; if one appears anyway, fail AT CAPTURE with a
- * typed error instead of shipping a patch that cannot apply. */
-function assertNoBinaryStubs(diff, label) {
-    const stubs = parseUnifiedDiff(diff).files.filter((f) => f.binaryStub);
-    if (stubs.length > 0) {
-        const names = stubs.map((f) => f.newPath ?? f.oldPath ?? "(unknown)").join(", ");
-        throw new WorkspaceError(`${label} produced undeliverable binary stub(s) for: ${names}; the work product cannot be applied`);
-    }
-}
 export async function worktreeAdd(repo, path, branch, baseSha) {
     const r = await git(repo, ["worktree", "add", "-b", branch, path, baseSha]);
     if (r.code !== 0)

package/dist/git.js.map

@@ -1 +1 @@
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package/dist/manager.d.ts

@@ -12,6 +12,9 @@ export interface CapturedWorkspaceDiff {
      * baseline, a failed `diff`): an honest capture refusal, never "no changes". */
     captureIncomplete: boolean;
     captureFailure?: Error;
+    /** Untracked nested repositories left out of `diff` (a patch cannot carry
+     * another repository); disclosed with the attempt. */
+    excludedNestedRepositories?: string[];
 }
 export interface CreateEnvelopeOptions {
     taskId: string;

package/dist/manager.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manager.d.ts","sourceRoot":"","sources":["../src/manager.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EACV,aAAa,EACb,WAAW,EACX,iBAAiB,EACjB,aAAa,EACd,MAAM,mBAAmB,CAAC;AAI3B,OAAO,EAAqB,KAAK,WAAW,EAAE,MAAM,YAAY,CAAC;AAGjE,OAAO,EAGL,KAAK,sBAAsB,EAC5B,MAAM,0BAA0B,CAAC;AA6BlC;0EAC0E;AAC1E,MAAM,WAAW,qBAAqB;IACpC,IAAI,EAAE,MAAM,CAAC;IACb;wEACoE;IACpE,iBAAiB,EAAE,MAAM,EAAE,CAAC;IAC5B;oFACgF;IAChF,iBAAiB,EAAE,OAAO,CAAC;IAC3B,cAAc,CAAC,EAAE,KAAK,CAAC;CACxB;AAED,MAAM,WAAW,qBAAqB;IACpC,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,aAAa,CAAC,EAAE,aAAa,CAAC;IAC9B,WAAW,CAAC,EAAE,WAAW,CAAC;IAC1B,aAAa,CAAC,EAAE,aAAa,CAAC;IAC9B,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB;;;;;;OAMG;IACH,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB;2EACuE;IACvE,OAAO,CAAC,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;CAC7C;AAED;;;;GAIG;AACH,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AAE1D,qBAAa,gBAAgB;IAUzB,OAAO,CAAC,QAAQ,CAAC,QAAQ;IAT3B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAoB;IAEtD;uFACmF;IACnF,OAAO,CAAC,QAAQ,CAAC,sBAAsB,CAAqB;IAC5D,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAqB;IAEvD,YACmB,QAAQ,EAAE,MAAM,EACjC,OAAO,GAAE;QAAE,WAAW,CAAC,EAAE,MAAM,CAAA;KAAO,EAMvC;IAED,OAAO,CAAC,aAAa;IAIrB;;;;;OAKG;IACH,OAAO,CAAC,YAAY;IAiBpB,uBAAuB,CAAC,GAAG,EAAE,iBAAiB,GAAG,MAAM,CAEtD;IAED,8BAA8B,CAAC,GAAG,EAAE,iBAAiB,GAAG,MAAM,GAAG,IAAI,CAEpE;IAEK,MAAM,CAAC,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,iBAAiB,CAAC,CA8IpE;IAED,6FAA6F;IAC7F,MAAM,CAAC,GAAG,EAAE,iBAAiB,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAErD;IAED;;;;;;;;;;;;OAYG;IACH,eAAe,IAAI;QAAE,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAAC,OAAO,EAAE,MAAM,IAAI,CAAA;KAAE,CAetE;IAED;;;;;;;OAOG;IACH,WAAW,CAAC,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI,GAAG,WAAW,CAEtF;IAEK,WAAW,CAAC,GAAG,EAAE,iBAAiB,GAAG,OAAO,CAAC,qBAAqB,CAAC,CAoExE;IAEK,IAAI,CAAC,GAAG,EAAE,iBAAiB,GAAG,OAAO,CAAC,MAAM,CAAC,CAKlD;IAED,iFAAiF;IAC3E,YAAY,CAChB,GAAG,EAAE,iBAAiB,EACtB,OAAO,EAAE,MAAM,EACf,OAAO,GAAE;QAAE,aAAa,CAAC,EAAE,MAAM,EAAE,CAAA;KAAO,GACzC,OAAO,CAAC,sBAAsB,CAAC,CAWjC;IAED;gFAC4E;IAC5E,OAAO,CAAC,iBAAiB;IAKzB;mFAC+E;IAC/E,cAAc,CAAC,GAAG,EAAE,iBAAiB,GAAG,IAAI,CAE3C;IAEK,OAAO,CAAC,GAAG,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CA2DnD;IAED;;;;;;;OAOG;IACG,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAsCpE;CACF"}
+{"version":3,"file":"manager.d.ts","sourceRoot":"","sources":["../src/manager.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EACV,aAAa,EACb,WAAW,EACX,iBAAiB,EACjB,aAAa,EACd,MAAM,mBAAmB,CAAC;AAI3B,OAAO,EAAqB,KAAK,WAAW,EAAE,MAAM,YAAY,CAAC;AAGjE,OAAO,EAGL,KAAK,sBAAsB,EAC5B,MAAM,0BAA0B,CAAC;AA6BlC;0EAC0E;AAC1E,MAAM,WAAW,qBAAqB;IACpC,IAAI,EAAE,MAAM,CAAC;IACb;wEACoE;IACpE,iBAAiB,EAAE,MAAM,EAAE,CAAC;IAC5B;oFACgF;IAChF,iBAAiB,EAAE,OAAO,CAAC;IAC3B,cAAc,CAAC,EAAE,KAAK,CAAC;IACvB;0DACsD;IACtD,0BAA0B,CAAC,EAAE,MAAM,EAAE,CAAC;CACvC;AAED,MAAM,WAAW,qBAAqB;IACpC,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,aAAa,CAAC,EAAE,aAAa,CAAC;IAC9B,WAAW,CAAC,EAAE,WAAW,CAAC;IAC1B,aAAa,CAAC,EAAE,aAAa,CAAC;IAC9B,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB;;;;;;OAMG;IACH,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB;2EACuE;IACvE,OAAO,CAAC,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC;CAC7C;AAED;;;;GAIG;AACH,OAAO,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AAE1D,qBAAa,gBAAgB;IAUzB,OAAO,CAAC,QAAQ,CAAC,QAAQ;IAT3B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAoB;IAEtD;uFACmF;IACnF,OAAO,CAAC,QAAQ,CAAC,sBAAsB,CAAqB;IAC5D,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAqB;IAEvD,YACmB,QAAQ,EAAE,MAAM,EACjC,OAAO,GAAE;QAAE,WAAW,CAAC,EAAE,MAAM,CAAA;KAAO,EAMvC;IAED,OAAO,CAAC,aAAa;IAIrB;;;;;OAKG;IACH,OAAO,CAAC,YAAY;IAiBpB,uBAAuB,CAAC,GAAG,EAAE,iBAAiB,GAAG,MAAM,CAEtD;IAED,8BAA8B,CAAC,GAAG,EAAE,iBAAiB,GAAG,MAAM,GAAG,IAAI,CAEpE;IAEK,MAAM,CAAC,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,iBAAiB,CAAC,CA8IpE;IAED,6FAA6F;IAC7F,MAAM,CAAC,GAAG,EAAE,iBAAiB,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAErD;IAED;;;;;;;;;;;;OAYG;IACH,eAAe,IAAI;QAAE,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAAC,OAAO,EAAE,MAAM,IAAI,CAAA;KAAE,CAetE;IAED;;;;;;;OAOG;IACH,WAAW,CAAC,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI,GAAG,WAAW,CAEtF;IAEK,WAAW,CAAC,GAAG,EAAE,iBAAiB,GAAG,OAAO,CAAC,qBAAqB,CAAC,CA0ExE;IAEK,IAAI,CAAC,GAAG,EAAE,iBAAiB,GAAG,OAAO,CAAC,MAAM,CAAC,CAKlD;IAED,iFAAiF;IAC3E,YAAY,CAChB,GAAG,EAAE,iBAAiB,EACtB,OAAO,EAAE,MAAM,EACf,OAAO,GAAE;QAAE,aAAa,CAAC,EAAE,MAAM,EAAE,CAAA;KAAO,GACzC,OAAO,CAAC,sBAAsB,CAAC,CAWjC;IAED;gFAC4E;IAC5E,OAAO,CAAC,iBAAiB;IAKzB;mFAC+E;IAC/E,cAAc,CAAC,GAAG,EAAE,iBAAiB,GAAG,IAAI,CAE3C;IAEK,OAAO,CAAC,GAAG,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CA2DnD;IAED;;;;;;;OAOG;IACG,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAsCpE;CACF"}

package/dist/manager.js

@@ -269,6 +269,9 @@ export class WorkspaceManager {
                     binarySecretPaths: captured.binarySecretPaths,
                     captureIncomplete: captured.captureIncomplete,
                     captureFailure: captured.captureFailure,
+                    ...(captured.excludedNestedRepositories
+                        ? { excludedNestedRepositories: captured.excludedNestedRepositories }
+                        : {}),
                 };
             }
             // Non-git fallback: diff the best-effort cpSync baseline against the live
@@ -304,6 +307,9 @@ export class WorkspaceManager {
             binarySecretPaths: captured.binarySecretPaths,
             captureIncomplete: captured.captureIncomplete,
             captureFailure: captured.captureFailure,
+            ...(captured.excludedNestedRepositories
+                ? { excludedNestedRepositories: captured.excludedNestedRepositories }
+                : {}),
         };
     }
     async diff(env) {

package/dist/manager.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@claudexor/workspace",
-  "version": "4.2.0",
+  "version": "4.3.1",
   "license": "MIT",
   "description": "WorkspaceEnvelope manager: git worktree + scoped HOME/harness-config isolation + dirty policy.",
   "type": "module",
@@ -16,9 +16,9 @@
     "dist"
   ],
   "dependencies": {
-    "@claudexor/schema": "4.2.0",
-    "@claudexor/util": "4.2.0",
-    "@claudexor/core": "4.2.0"
+    "@claudexor/core": "4.3.1",
+    "@claudexor/schema": "4.3.1",
+    "@claudexor/util": "4.3.1"
   },
   "repository": {
     "type": "git",