@claudebernard/node-fhir-mapper 2.1.3 → 2.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +39 -0
- package/dist/index.d.ts +48 -5
- package/dist/index.js +132 -9
- package/package.json +1 -1
package/README.md
CHANGED
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@@ -436,6 +436,45 @@ function createMedicationsFromCISCodes(codes: string[]): MappingResponse<Bundle>
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Similar functions for creating medications from CIP13 and CIS codes respectively. They also add a blank MedicationRequest per Medication.
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#### - createMedicationsFromProducts / createMedicationFromProduct
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```ts
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function createMedicationsFromProducts(products: Product[]): MappingResponse<Bundle> {}
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function createMedicationFromProduct(product: Product): Medication | undefined {}
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```
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Same as `createMedicationsFromBcbCodes`, but starting from the `Product` objects returned by the BCB APIs (`@claudebernard/types`), so the medication labels are kept along with the codes. Each Medication carries one Coding per code the Product holds — `code` for the bcb-code, `properties.codes.cip13` (or `code13`) for the cip13-code, `properties.codes.cis` for the cis-code — each with the product label as `display`, and the same label as the CodeableConcept `text` :
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```json
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{
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"resourceType": "Medication",
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"id": "95175bcb-f3cf-4eb8-83be-7956554cd0b8",
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"code": {
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"coding": [
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{ "system": "https://platform.claudebernard.fr/fhir/CodeSystem/bcb-code", "code": "76461", "display": "JANUMET 50 mg/1000 mg, comprimé pelliculé" },
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{ "system": "http://terminology.hl7.org/CodeSystem/cip13-code", "code": "3400957312114", "display": "JANUMET 50 mg/1000 mg, comprimé pelliculé" },
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{ "system": "http://terminology.hl7.org/CodeSystem/cis-code", "code": "66010671", "display": "JANUMET 50 mg/1000 mg, comprimé pelliculé" }
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],
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"text": "JANUMET 50 mg/1000 mg, comprimé pelliculé"
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}
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}
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```
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The label is read from `labels.label`, falling back on `labels.longLabel` then `labels.shortLabel`, depending on which fields the API in use fills ; the HTML flavoured fields (`labelHtml` & co) are never used. Unlike the other creation functions, the Bundle `id` is a UUID v4 as well, so it differs from one call to the next. A Product carrying none of the three codes is skipped and reported in the `errors` field of the response ; `createMedicationFromProduct` returns `undefined` for it.
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##### Usage
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```ts
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import { medicationMapper } from '@claudebernard/fhir-mapper';
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const response = medicationMapper.createMedicationsFromProducts(products);
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if (response.result) {
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// Bundle with the Medication resources first, then their MedicationRequest resources
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console.log(response.result.entry?.length);
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}
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```
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#### - extractBcbCodesFromMedications / extractCIP13CodesFromMedications / extractCISCodesFromMedications
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```ts
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package/dist/index.d.ts
CHANGED
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@@ -1,5 +1,5 @@
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import { Dosage, Bundle } from 'fhir/r5';
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import { CBPatient } from '@claudebernard/types';
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import { Dosage, Bundle, Medication } from 'fhir/r5';
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import { CBPatient, Product } from '@claudebernard/types';
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interface BCBPosologieStructuree2 {
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adequationUP?: number | null;
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@@ -191,6 +191,9 @@ declare namespace patientMapper_d {
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};
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}
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declare const BCB_CODE_SYSTEM = "https://platform.claudebernard.fr/fhir/CodeSystem/bcb-code";
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declare const CIP13_CODE_SYSTEM = "http://terminology.hl7.org/CodeSystem/cip13-code";
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declare const CIS_CODE_SYSTEM = "http://terminology.hl7.org/CodeSystem/cis-code";
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/**
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* Generate a hash-based ID for a medication based on its codes
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*/
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@@ -204,21 +207,21 @@ declare const generateMedicationId: (codes: string[], system: string) => string;
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declare function extractCodesFromMedications(bundle: Bundle, system: string): string[];
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/**
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* Extracts a list of bcb-code strings from a Bundle containing Medication resources.
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* Only codes with system
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* Only codes with system BCB_CODE_SYSTEM are included.
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* @param bundle Bundle containing Medication resources
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* @returns List of BCB codes
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*/
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declare function extractBcbCodesFromMedications(bundle: Bundle): string[];
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/**
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* Extracts a list of cip13-code strings from a Bundle containing Medication resources.
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* Only codes with system
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* Only codes with system CIP13_CODE_SYSTEM are included.
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* @param bundle Bundle containing Medication resources
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* @returns List of CIP13 codes
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*/
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declare function extractCIP13CodesFromMedications(bundle: Bundle): string[];
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/**
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* Extracts a list of cis-code strings from a Bundle containing Medication resources.
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* Only codes with system
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* Only codes with system CIS_CODE_SYSTEM are included.
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* @param bundle Bundle containing Medication resources
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* @returns List of CIS codes
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*/
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@@ -247,24 +250,64 @@ declare function createMedicationsFromCIP13Codes(cip13Codes: string[]): MappingR
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* @returns MappingResponse containing a Bundle with Medication and MedicationRequest resources
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*/
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declare function createMedicationsFromCISCodes(cisCodes: string[]): MappingResponse<Bundle>;
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/**
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* Reads the human readable label of a Product, falling back on the other plain text
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* label fields when the preferred one is not filled by the BCB API in use.
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* The HTML flavoured fields (labelHtml and friends) are never used.
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* @param product Product to read the label from
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* @returns The product label, or undefined when the Product carries none
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*/
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declare const extractProductLabel: (product: Product) => string | undefined;
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/**
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* Creates a Medication from a Claude Bernard Product, keeping both its codes and its label.
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* The Medication holds one Coding per code the Product carries (bcb-code, cip13-code, cis-code),
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* each with the product label as `display`, and the same label as the CodeableConcept `text`.
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* The Medication id is a UUID v4, so it differs from one call to the next.
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* @param product Product to convert to a Medication resource
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* @returns The Medication resource, or undefined when the Product carries no code at all
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*/
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declare function createMedicationFromProduct(product: Product): Medication | undefined;
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/**
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* Creates a Bundle containing a Medication and its associated MedicationRequest for each Product.
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* Each Medication keeps the product codes and label (see createMedicationFromProduct), and each
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* MedicationRequest references its Medication without any dosage instruction.
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* Products carrying no code at all are skipped and reported in the `errors` field.
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* Every id, the Bundle one included, is a UUID v4, so they all differ from one call to
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* the next, and every entry carries a fullUrl built as "<ResourceType>/<id>".
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* @param products List of Products to convert to Medication / MedicationRequest resources
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* @returns MappingResponse containing a Bundle with Medication and MedicationRequest resources
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*/
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declare function createMedicationsFromProducts(products: Product[]): MappingResponse<Bundle>;
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declare const medicationMapper_d_BCB_CODE_SYSTEM: typeof BCB_CODE_SYSTEM;
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declare const medicationMapper_d_CIP13_CODE_SYSTEM: typeof CIP13_CODE_SYSTEM;
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declare const medicationMapper_d_CIS_CODE_SYSTEM: typeof CIS_CODE_SYSTEM;
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declare const medicationMapper_d_createMedicationFromProduct: typeof createMedicationFromProduct;
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declare const medicationMapper_d_createMedicationsFromBcbCodes: typeof createMedicationsFromBcbCodes;
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declare const medicationMapper_d_createMedicationsFromCIP13Codes: typeof createMedicationsFromCIP13Codes;
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declare const medicationMapper_d_createMedicationsFromCISCodes: typeof createMedicationsFromCISCodes;
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declare const medicationMapper_d_createMedicationsFromProducts: typeof createMedicationsFromProducts;
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declare const medicationMapper_d_extractBcbCodesFromMedications: typeof extractBcbCodesFromMedications;
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declare const medicationMapper_d_extractCIP13CodesFromMedications: typeof extractCIP13CodesFromMedications;
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declare const medicationMapper_d_extractCISCodesFromMedications: typeof extractCISCodesFromMedications;
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declare const medicationMapper_d_extractCodesFromMedications: typeof extractCodesFromMedications;
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declare const medicationMapper_d_extractProductLabel: typeof extractProductLabel;
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declare const medicationMapper_d_generateMedicationId: typeof generateMedicationId;
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declare namespace medicationMapper_d {
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export {
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medicationMapper_d_BCB_CODE_SYSTEM as BCB_CODE_SYSTEM,
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medicationMapper_d_CIP13_CODE_SYSTEM as CIP13_CODE_SYSTEM,
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medicationMapper_d_CIS_CODE_SYSTEM as CIS_CODE_SYSTEM,
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medicationMapper_d_createMedicationFromProduct as createMedicationFromProduct,
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medicationMapper_d_createMedicationsFromBcbCodes as createMedicationsFromBcbCodes,
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medicationMapper_d_createMedicationsFromCIP13Codes as createMedicationsFromCIP13Codes,
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medicationMapper_d_createMedicationsFromCISCodes as createMedicationsFromCISCodes,
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medicationMapper_d_createMedicationsFromProducts as createMedicationsFromProducts,
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medicationMapper_d_extractBcbCodesFromMedications as extractBcbCodesFromMedications,
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medicationMapper_d_extractCIP13CodesFromMedications as extractCIP13CodesFromMedications,
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medicationMapper_d_extractCISCodesFromMedications as extractCISCodesFromMedications,
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medicationMapper_d_extractCodesFromMedications as extractCodesFromMedications,
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medicationMapper_d_extractProductLabel as extractProductLabel,
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medicationMapper_d_generateMedicationId as generateMedicationId,
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};
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}
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package/dist/index.js
CHANGED
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@@ -1439,6 +1439,9 @@ const generateUuidV4 = () => {
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].join('-');
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};
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const BCB_CODE_SYSTEM = "https://platform.claudebernard.fr/fhir/CodeSystem/bcb-code";
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const CIP13_CODE_SYSTEM = "http://terminology.hl7.org/CodeSystem/cip13-code";
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const CIS_CODE_SYSTEM = "http://terminology.hl7.org/CodeSystem/cis-code";
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/**
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* Generate a hash-based ID for a medication based on its codes
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*/
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@@ -1485,30 +1488,30 @@ function extractCodesFromMedications(bundle, system) {
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}
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/**
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* Extracts a list of bcb-code strings from a Bundle containing Medication resources.
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* Only codes with system
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* Only codes with system BCB_CODE_SYSTEM are included.
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* @param bundle Bundle containing Medication resources
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* @returns List of BCB codes
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*/
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function extractBcbCodesFromMedications(bundle) {
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return extractCodesFromMedications(bundle,
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return extractCodesFromMedications(bundle, BCB_CODE_SYSTEM);
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}
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/**
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* Extracts a list of cip13-code strings from a Bundle containing Medication resources.
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* Only codes with system
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* Only codes with system CIP13_CODE_SYSTEM are included.
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* @param bundle Bundle containing Medication resources
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* @returns List of CIP13 codes
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*/
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function extractCIP13CodesFromMedications(bundle) {
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-
return extractCodesFromMedications(bundle,
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return extractCodesFromMedications(bundle, CIP13_CODE_SYSTEM);
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}
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/**
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* Extracts a list of cis-code strings from a Bundle containing Medication resources.
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* Only codes with system
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* Only codes with system CIS_CODE_SYSTEM are included.
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* @param bundle Bundle containing Medication resources
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* @returns List of CIS codes
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*/
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function extractCISCodesFromMedications(bundle) {
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-
return extractCodesFromMedications(bundle,
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return extractCodesFromMedications(bundle, CIS_CODE_SYSTEM);
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}
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/**
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* Wraps a resource into a Bundle entry, carrying its fullUrl as "<ResourceType>/<id>"
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@@ -1586,7 +1589,7 @@ const createMedicationsFromCodes = (codes, system) => {
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* @returns MappingResponse containing a Bundle with Medication and MedicationRequest resources
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*/
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function createMedicationsFromBcbCodes(bcbCodes) {
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return createMedicationsFromCodes(bcbCodes,
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return createMedicationsFromCodes(bcbCodes, BCB_CODE_SYSTEM);
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}
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/**
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* Creates a Bundle containing Medication resources from a list of CIP13 codes.
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@@ -1596,7 +1599,7 @@ function createMedicationsFromBcbCodes(bcbCodes) {
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* @returns MappingResponse containing a Bundle with Medication and MedicationRequest resources
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*/
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function createMedicationsFromCIP13Codes(cip13Codes) {
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return createMedicationsFromCodes(cip13Codes,
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return createMedicationsFromCodes(cip13Codes, CIP13_CODE_SYSTEM);
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}
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/**
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* Creates a Bundle containing Medication resources from a list of CIS codes.
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@@ -1606,18 +1609,138 @@ function createMedicationsFromCIP13Codes(cip13Codes) {
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* @returns MappingResponse containing a Bundle with Medication and MedicationRequest resources
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*/
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function createMedicationsFromCISCodes(cisCodes) {
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return createMedicationsFromCodes(cisCodes,
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return createMedicationsFromCodes(cisCodes, CIS_CODE_SYSTEM);
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}
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/**
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* Reads the human readable label of a Product, falling back on the other plain text
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* label fields when the preferred one is not filled by the BCB API in use.
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* The HTML flavoured fields (labelHtml and friends) are never used.
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* @param product Product to read the label from
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* @returns The product label, or undefined when the Product carries none
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*/
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const extractProductLabel = (product) => {
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const label = product.labels?.label
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?? product.labels?.longLabel
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?? product.labels?.shortLabel;
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return label?.trim() || undefined;
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};
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/**
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* Builds one Coding per code the Product carries (bcb-code, cip13-code, cis-code),
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* each one carrying the product label as its display.
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*/
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const buildProductCodings = (product) => {
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const display = extractProductLabel(product);
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const codes = [
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{ system: BCB_CODE_SYSTEM, code: product.code },
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{ system: CIP13_CODE_SYSTEM, code: product.properties?.codes?.cip13 ?? product.code13 },
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{ system: CIS_CODE_SYSTEM, code: product.properties?.codes?.cis }
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];
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return codes
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.filter(({ code }) => !!code)
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.map(({ system, code }) => ({ system, code, ...(display ? { display } : {}) }));
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};
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/**
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* Creates a Medication from a Claude Bernard Product, keeping both its codes and its label.
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1644
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* The Medication holds one Coding per code the Product carries (bcb-code, cip13-code, cis-code),
|
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1645
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* each with the product label as `display`, and the same label as the CodeableConcept `text`.
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1646
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+
* The Medication id is a UUID v4, so it differs from one call to the next.
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1647
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* @param product Product to convert to a Medication resource
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1648
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* @returns The Medication resource, or undefined when the Product carries no code at all
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1649
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*/
|
|
1650
|
+
function createMedicationFromProduct(product) {
|
|
1651
|
+
const coding = buildProductCodings(product);
|
|
1652
|
+
if (coding.length === 0) {
|
|
1653
|
+
return undefined;
|
|
1654
|
+
}
|
|
1655
|
+
const label = extractProductLabel(product);
|
|
1656
|
+
return {
|
|
1657
|
+
resourceType: 'Medication',
|
|
1658
|
+
id: generateUuidV4(),
|
|
1659
|
+
code: {
|
|
1660
|
+
coding,
|
|
1661
|
+
...(label ? { text: label } : {})
|
|
1662
|
+
}
|
|
1663
|
+
};
|
|
1664
|
+
}
|
|
1665
|
+
/**
|
|
1666
|
+
* Creates a Bundle containing a Medication and its associated MedicationRequest for each Product.
|
|
1667
|
+
* Each Medication keeps the product codes and label (see createMedicationFromProduct), and each
|
|
1668
|
+
* MedicationRequest references its Medication without any dosage instruction.
|
|
1669
|
+
* Products carrying no code at all are skipped and reported in the `errors` field.
|
|
1670
|
+
* Every id, the Bundle one included, is a UUID v4, so they all differ from one call to
|
|
1671
|
+
* the next, and every entry carries a fullUrl built as "<ResourceType>/<id>".
|
|
1672
|
+
* @param products List of Products to convert to Medication / MedicationRequest resources
|
|
1673
|
+
* @returns MappingResponse containing a Bundle with Medication and MedicationRequest resources
|
|
1674
|
+
*/
|
|
1675
|
+
function createMedicationsFromProducts(products) {
|
|
1676
|
+
if (!products || products.length === 0) {
|
|
1677
|
+
return {
|
|
1678
|
+
result: {
|
|
1679
|
+
resourceType: "Bundle",
|
|
1680
|
+
id: generateUuidV4(),
|
|
1681
|
+
type: "collection",
|
|
1682
|
+
entry: []
|
|
1683
|
+
},
|
|
1684
|
+
errors: []
|
|
1685
|
+
};
|
|
1686
|
+
}
|
|
1687
|
+
const errors = [];
|
|
1688
|
+
const medications = [];
|
|
1689
|
+
products.forEach((product, index) => {
|
|
1690
|
+
const medication = createMedicationFromProduct(product);
|
|
1691
|
+
if (!medication) {
|
|
1692
|
+
errors.push({
|
|
1693
|
+
field: `products[${index}]`,
|
|
1694
|
+
message: 'Product carries no bcb-code, cip13-code nor cis-code, no Medication created'
|
|
1695
|
+
});
|
|
1696
|
+
return;
|
|
1697
|
+
}
|
|
1698
|
+
medications.push(medication);
|
|
1699
|
+
});
|
|
1700
|
+
const medicationRequests = medications.map(medication => ({
|
|
1701
|
+
resourceType: 'MedicationRequest',
|
|
1702
|
+
id: generateUuidV4(),
|
|
1703
|
+
status: 'active',
|
|
1704
|
+
intent: 'order',
|
|
1705
|
+
medication: {
|
|
1706
|
+
reference: {
|
|
1707
|
+
reference: `Medication/${medication.id}`
|
|
1708
|
+
}
|
|
1709
|
+
},
|
|
1710
|
+
subject: {
|
|
1711
|
+
reference: 'Patient/unknown'
|
|
1712
|
+
}
|
|
1713
|
+
}));
|
|
1714
|
+
const bundle = {
|
|
1715
|
+
resourceType: "Bundle",
|
|
1716
|
+
id: generateUuidV4(),
|
|
1717
|
+
type: "collection",
|
|
1718
|
+
entry: [
|
|
1719
|
+
...medications.map(medication => toBundleEntry(medication)),
|
|
1720
|
+
...medicationRequests.map(medicationRequest => toBundleEntry(medicationRequest))
|
|
1721
|
+
]
|
|
1722
|
+
};
|
|
1723
|
+
return {
|
|
1724
|
+
result: bundle,
|
|
1725
|
+
errors
|
|
1726
|
+
};
|
|
1610
1727
|
}
|
|
1611
1728
|
|
|
1612
1729
|
var medicationMapper = /*#__PURE__*/Object.freeze({
|
|
1613
1730
|
__proto__: null,
|
|
1731
|
+
BCB_CODE_SYSTEM: BCB_CODE_SYSTEM,
|
|
1732
|
+
CIP13_CODE_SYSTEM: CIP13_CODE_SYSTEM,
|
|
1733
|
+
CIS_CODE_SYSTEM: CIS_CODE_SYSTEM,
|
|
1734
|
+
createMedicationFromProduct: createMedicationFromProduct,
|
|
1614
1735
|
createMedicationsFromBcbCodes: createMedicationsFromBcbCodes,
|
|
1615
1736
|
createMedicationsFromCIP13Codes: createMedicationsFromCIP13Codes,
|
|
1616
1737
|
createMedicationsFromCISCodes: createMedicationsFromCISCodes,
|
|
1738
|
+
createMedicationsFromProducts: createMedicationsFromProducts,
|
|
1617
1739
|
extractBcbCodesFromMedications: extractBcbCodesFromMedications,
|
|
1618
1740
|
extractCIP13CodesFromMedications: extractCIP13CodesFromMedications,
|
|
1619
1741
|
extractCISCodesFromMedications: extractCISCodesFromMedications,
|
|
1620
1742
|
extractCodesFromMedications: extractCodesFromMedications,
|
|
1743
|
+
extractProductLabel: extractProductLabel,
|
|
1621
1744
|
generateMedicationId: generateMedicationId
|
|
1622
1745
|
});
|
|
1623
1746
|
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@claudebernard/node-fhir-mapper",
|
|
3
|
-
"version": "2.1.
|
|
3
|
+
"version": "2.1.4",
|
|
4
4
|
"description": "A simple FHIR / BCB resource mapper to help stay interoperable while still using the Claude Bernard intelligence",
|
|
5
5
|
"type": "module",
|
|
6
6
|
"main": "dist/index.js",
|