@claude-flow/memory 3.0.0-alpha.23 → 3.0.0-alpha.25

package/dist/consolidator.js

@@ -23,6 +23,23 @@
  */
 import { createHash } from 'node:crypto';
 import { HNSWIndex } from './hnsw-index.js';
+const DEFAULT_SIMILARITY_THRESHOLD = 0.95;
+/** Neighborhood size for the near-duplicate HNSW lookup — small and cheap. */
+const NEAR_DUP_SEARCH_K = 8;
+/**
+ * Explicit `ef` (candidate-list size) for the near-duplicate HNSW search.
+ * Left unset, `HNSWIndex.search()` defaults `ef` to
+ * `Math.max(k, efConstruction)` — efConstruction defaults to 200, so an
+ * unset `ef` here means every dedup() search traverses a 200-candidate
+ * list even though duplicate detection only needs to find very-close
+ * neighbors (high similarity), not broad top-k recall. Measured impact at
+ * N=5000 (`consolidator-embedding-benchmark.test.ts`): ~9.8s with the
+ * inherited ef=200 default vs a small fixed ef here. 32 is a deliberate
+ * margin above NEAR_DUP_SEARCH_K (8) for HNSW's approximate-search
+ * headroom, not a re-derivation of efConstruction's separate
+ * index-build-quality concern.
+ */
+const NEAR_DUP_SEARCH_EF = 32;
 export class MemoryConsolidator {
     service;
     opts;
@@ -76,7 +93,75 @@ export class MemoryConsolidator {
         };
     }
     /**
-     * Collapse content-hash duplicates across all namespaces per `strategy`.
+     * Pick the keeper for a duplicate group per `strategy` and, for
+     * `merge-tags`, union the group's tag sets onto it. Shared by both the
+     * content-hash pass and the embedding near-duplicate pass in `dedup()`.
+     */
+    selectKeeper(bucket, strategy) {
+        const keeper = strategy === 'keep-oldest'
+            ? bucket.reduce((acc, e) => (e.createdAt < acc.createdAt ? e : acc))
+            : // keep-newest + merge-tags share this branch
+                bucket.reduce((acc, e) => (e.updatedAt > acc.updatedAt ? e : acc));
+        return keeper;
+    }
+    /**
+     * Drop every entry in `bucket` except the strategy-selected keeper,
+     * updating all adapter indexes (and the HNSW index, for entries that have
+     * an embedding) to match. Shared by both dedup passes.
+     */
+    async mergeGroup(bucket, strategy, ctx) {
+        const keeper = this.selectKeeper(bucket, strategy);
+        if (strategy === 'merge-tags') {
+            const tagSet = new Set(keeper.tags);
+            for (const e of bucket)
+                for (const t of e.tags)
+                    tagSet.add(t);
+            const oldTags = keeper.tags;
+            keeper.tags = [...tagSet];
+            // Update tagIndex membership for newly-added tags
+            for (const t of keeper.tags) {
+                if (!oldTags.includes(t)) {
+                    if (!ctx.tagIndex.has(t))
+                        ctx.tagIndex.set(t, new Set());
+                    ctx.tagIndex.get(t).add(keeper.id);
+                }
+            }
+        }
+        let dropped = 0;
+        for (const e of bucket) {
+            if (e.id === keeper.id)
+                continue;
+            ctx.entries.delete(e.id);
+            ctx.namespaceIndex.get(e.namespace)?.delete(e.id);
+            const compositeKey = `${e.namespace}:${e.key}`;
+            if (ctx.keyIndex.get(compositeKey) === e.id) {
+                ctx.keyIndex.delete(compositeKey);
+            }
+            for (const tag of e.tags)
+                ctx.tagIndex.get(tag)?.delete(e.id);
+            if (e.embedding) {
+                await ctx.index.removePoint(e.id);
+            }
+            dropped += 1;
+        }
+        return { keeperId: keeper.id, dropped };
+    }
+    /**
+     * Collapse duplicates across all namespaces per `strategy`, in two passes:
+     *
+     * 1. Byte-exact content-hash buckets (unchanged from pre-4.1 behavior).
+     * 2. Embedding near-duplicates: for entries that survive pass 1 and carry
+     *    an `embedding`, query the already-populated `HNSWIndex` (the same
+     *    index instance this method already holds a handle to for removal
+     *    bookkeeping) for cosine-similarity neighbors above
+     *    `opts.similarityThreshold` (default 0.95). This catches paraphrases
+     *    and reformattings that byte-exact hashing structurally cannot, at no
+     *    extra backend round-trip cost — the embedding and the index are both
+     *    already resident in memory at this call site.
+     *
+     * Pass 2 only runs when the index's configured metric is `'cosine'` (its
+     * distances are `1 - similarity`) and the threshold is `< 1`; otherwise
+     * behavior is identical to hash-only dedup.
      *
      * - `keep-newest`: keep the entry with the highest `updatedAt`, drop the rest.
      * - `keep-oldest`: keep the entry with the lowest `createdAt`, drop the rest.
@@ -89,8 +174,9 @@ export class MemoryConsolidator {
         const keyIndex = adapter.keyIndex;
         const tagIndex = adapter.tagIndex;
         const index = adapter.index;
+        const ctx = { entries, namespaceIndex, keyIndex, tagIndex, index };
         const effective = strategy ?? this.opts.dedupStrategy ?? 'keep-newest';
-        // Bucket by content hash
+        // Pass 1: bucket by content hash (byte-exact duplicates)
         const buckets = new Map();
         for (const entry of entries.values()) {
             const hash = createHash('sha256').update(entry.content).digest('hex');
@@ -106,48 +192,59 @@ export class MemoryConsolidator {
             if (bucket.length <= 1)
                 continue;
             dupGroups += 1;
-            // Choose keeper
-            let keeper;
-            if (effective === 'keep-oldest') {
-                keeper = bucket.reduce((acc, e) => e.createdAt < acc.createdAt ? e : acc);
-            }
-            else {
-                // keep-newest + merge-tags share this branch
-                keeper = bucket.reduce((acc, e) => e.updatedAt > acc.updatedAt ? e : acc);
-            }
-            if (effective === 'merge-tags') {
-                const tagSet = new Set(keeper.tags);
-                for (const e of bucket)
-                    for (const t of e.tags)
-                        tagSet.add(t);
-                const oldTags = keeper.tags;
-                keeper.tags = [...tagSet];
-                // Update tagIndex membership for newly-added tags
-                for (const t of keeper.tags) {
-                    if (!oldTags.includes(t)) {
-                        if (!tagIndex.has(t))
-                            tagIndex.set(t, new Set());
-                        tagIndex.get(t).add(keeper.id);
+            const { dropped } = await this.mergeGroup(bucket, effective, ctx);
+            merged += dropped;
+        }
+        // Pass 2: embedding near-duplicates among pass-1 survivors.
+        //
+        // Each round only groups an entry with what its single
+        // `NEAR_DUP_SEARCH_K`-wide HNSW query returns, so a duplicate cluster
+        // larger than that window can split into more than one surviving
+        // sub-group in a single round (each sub-group's keeper remains
+        // un-merged with the others). Looping to a fixed point — re-scanning
+        // until a full round produces zero merges — guarantees a single
+        // `dedup()` call fully converges regardless of cluster size, at the
+        // cost of one extra full round whenever a cluster does split (bounded:
+        // strictly fewer entries remain each round that merges anything, so
+        // this always terminates). `groups` therefore counts merge operations
+        // across all rounds, which can exceed the number of ultimate
+        // underlying duplicate clusters when one of them needed more than one
+        // round to fully collapse.
+        const threshold = this.opts.similarityThreshold ?? DEFAULT_SIMILARITY_THRESHOLD;
+        if (index.getConfig().metric === 'cosine' && threshold < 1) {
+            let roundMerged;
+            do {
+                roundMerged = 0;
+                const consumed = new Set();
+                // Snapshot survivors up front — mutated further as groups merge.
+                for (const entry of [...entries.values()]) {
+                    if (consumed.has(entry.id) || !entry.embedding || !entries.has(entry.id)) {
+                        continue;
                     }
+                    const hits = await index.search(entry.embedding, NEAR_DUP_SEARCH_K, NEAR_DUP_SEARCH_EF);
+                    const group = [entry];
+                    for (const hit of hits) {
+                        if (hit.id === entry.id || consumed.has(hit.id))
+                            continue;
+                        const candidate = entries.get(hit.id);
+                        if (!candidate || !candidate.embedding)
+                            continue;
+                        const similarity = 1 - hit.distance;
+                        if (similarity >= threshold)
+                            group.push(candidate);
+                    }
+                    if (group.length <= 1) {
+                        consumed.add(entry.id);
+                        continue;
+                    }
+                    dupGroups += 1;
+                    const { dropped } = await this.mergeGroup(group, effective, ctx);
+                    merged += dropped;
+                    roundMerged += dropped;
+                    for (const e of group)
+                        consumed.add(e.id);
                 }
-            }
-            // Drop everyone except the keeper
-            for (const e of bucket) {
-                if (e.id === keeper.id)
-                    continue;
-                entries.delete(e.id);
-                namespaceIndex.get(e.namespace)?.delete(e.id);
-                const compositeKey = `${e.namespace}:${e.key}`;
-                if (keyIndex.get(compositeKey) === e.id) {
-                    keyIndex.delete(compositeKey);
-                }
-                for (const tag of e.tags)
-                    tagIndex.get(tag)?.delete(e.id);
-                if (e.embedding) {
-                    await index.removePoint(e.id);
-                }
-                merged += 1;
-            }
+            } while (roundMerged > 0);
         }
         return { merged, groups: dupGroups };
     }

package/dist/consolidator.js.map

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package/dist/consolidator.test.js

@@ -16,6 +16,7 @@
 import { describe, it, expect, vi } from 'vitest';
 import { MemoryService } from './index.js';
 import { MemoryConsolidator } from './consolidator.js';
+import { HNSWIndex } from './hnsw-index.js';
 import { ControllerRegistry } from './controller-registry.js';
 import { createDefaultEntry } from './types.js';
 function randomVec(dim, seed) {
@@ -159,6 +160,142 @@ describe('Phase 4 — MemoryConsolidator.dedup', () => {
         await svc.close();
     });
 });
+describe('Phase 4.1 — MemoryConsolidator.dedup embedding near-duplicates', () => {
+    it('merges different-content entries whose embeddings are near-identical (cosine >= threshold)', async () => {
+        const svc = await newService();
+        const consolidator = new MemoryConsolidator(svc);
+        const base = randomVec(8, 42);
+        const a = createDefaultEntry({ key: 'a', content: 'paraphrase-one' });
+        a.embedding = base;
+        a.updatedAt = 1000;
+        await svc.store(a);
+        const b = createDefaultEntry({
+            key: 'b',
+            content: 'paraphrase-two-totally-different-text',
+        });
+        b.embedding = new Float32Array(base); // identical vector, different content/hash
+        b.updatedAt = 2000;
+        await svc.store(b);
+        const result = await consolidator.dedup('keep-newest');
+        expect(result.merged).toBe(1);
+        expect(result.groups).toBe(1);
+        const adapter = svc.getAdapter();
+        expect(adapter.entries.size).toBe(1);
+        expect(adapter.entries.has(b.id)).toBe(true); // newer of the pair survives
+        await svc.close();
+    });
+    it('does not merge entries whose embeddings fall below the similarity threshold', async () => {
+        const svc = await newService();
+        const consolidator = new MemoryConsolidator(svc);
+        const a = createDefaultEntry({ key: 'a', content: 'unrelated-one' });
+        a.embedding = randomVec(8, 1);
+        await svc.store(a);
+        const b = createDefaultEntry({ key: 'b', content: 'unrelated-two' });
+        b.embedding = randomVec(8, 999);
+        await svc.store(b);
+        const result = await consolidator.dedup();
+        expect(result.merged).toBe(0);
+        expect(result.groups).toBe(0);
+        const adapter = svc.getAdapter();
+        expect(adapter.entries.size).toBe(2);
+        await svc.close();
+    });
+    it('falls back to hash-only behavior for entries with no embedding', async () => {
+        const svc = await newService();
+        const consolidator = new MemoryConsolidator(svc);
+        const a = createDefaultEntry({ key: 'a', content: 'no-embedding-a' });
+        await svc.store(a);
+        const b = createDefaultEntry({ key: 'b', content: 'no-embedding-b' });
+        await svc.store(b);
+        const result = await consolidator.dedup();
+        expect(result.merged).toBe(0);
+        expect(result.groups).toBe(0);
+        await svc.close();
+    });
+    it('respects a custom similarityThreshold option', async () => {
+        const svc = await newService();
+        // A threshold below cosine's minimum (-1) means every pair is "similar".
+        const consolidator = new MemoryConsolidator(svc, { similarityThreshold: -1 });
+        const a = createDefaultEntry({ key: 'a', content: 'threshold-one' });
+        a.embedding = randomVec(8, 11);
+        await svc.store(a);
+        const b = createDefaultEntry({ key: 'b', content: 'threshold-two' });
+        b.embedding = randomVec(8, 22);
+        await svc.store(b);
+        const result = await consolidator.dedup();
+        expect(result.merged).toBe(1);
+        expect(result.groups).toBe(1);
+        await svc.close();
+    });
+    it('disables the embedding pass entirely when similarityThreshold >= 1', async () => {
+        const svc = await newService();
+        const consolidator = new MemoryConsolidator(svc, { similarityThreshold: 1 });
+        const embedding = randomVec(8, 5);
+        const a = createDefaultEntry({ key: 'a', content: 'disabled-one' });
+        a.embedding = embedding;
+        await svc.store(a);
+        const b = createDefaultEntry({ key: 'b', content: 'disabled-two' });
+        b.embedding = new Float32Array(embedding); // identical vector, still not merged
+        await svc.store(b);
+        const result = await consolidator.dedup();
+        expect(result.merged).toBe(0);
+        expect(result.groups).toBe(0);
+        await svc.close();
+    });
+    it('fully converges a near-duplicate cluster larger than the search neighborhood in one call', async () => {
+        // Adversarial-critique regression: a cluster wider than
+        // NEAR_DUP_SEARCH_K must still collapse to a single survivor from one
+        // dedup() call, not split into multiple leftover sub-group survivors.
+        const svc = await newService();
+        const consolidator = new MemoryConsolidator(svc);
+        const base = randomVec(8, 12345);
+        const n = 15; // > NEAR_DUP_SEARCH_K (8)
+        for (let i = 0; i < n; i++) {
+            const entry = createDefaultEntry({ key: `cluster-${i}`, content: `unique-content-${i}` });
+            entry.embedding = new Float32Array(base); // pairwise cosine similarity 1.0
+            entry.updatedAt = 1000 + i;
+            await svc.store(entry);
+        }
+        const result = await consolidator.dedup('keep-newest');
+        expect(result.merged).toBe(n - 1);
+        const adapter = svc.getAdapter();
+        expect(adapter.entries.size).toBe(1);
+        // The single survivor should be the newest of the cluster.
+        const survivor = [...adapter.entries.values()][0];
+        expect(survivor.updatedAt).toBe(1000 + n - 1);
+        await svc.close();
+    });
+    it('skips the near-duplicate pass entirely for a non-cosine-metric index', async () => {
+        const index = new HNSWIndex({ dimensions: 8, metric: 'euclidean' });
+        const embedding = randomVec(8, 7);
+        const a = createDefaultEntry({ key: 'a', content: 'euclid-one' });
+        a.embedding = embedding;
+        const b = createDefaultEntry({ key: 'b', content: 'euclid-two' });
+        b.embedding = new Float32Array(embedding); // identical vector, different content
+        await index.addPoint(a.id, a.embedding);
+        await index.addPoint(b.id, b.embedding);
+        const entries = new Map([
+            [a.id, a],
+            [b.id, b],
+        ]);
+        const namespaceIndex = new Map([
+            [a.namespace, new Set([a.id, b.id])],
+        ]);
+        const keyIndex = new Map([
+            [`${a.namespace}:${a.key}`, a.id],
+            [`${b.namespace}:${b.key}`, b.id],
+        ]);
+        const tagIndex = new Map();
+        const fakeService = {
+            getAdapter: () => ({ entries, namespaceIndex, keyIndex, tagIndex, index }),
+        };
+        const consolidator = new MemoryConsolidator(fakeService);
+        const result = await consolidator.dedup();
+        expect(result.merged).toBe(0);
+        expect(result.groups).toBe(0);
+        expect(entries.size).toBe(2);
+    });
+});
 describe('Phase 4 — MemoryConsolidator.compactHnsw', () => {
     it('rebuilds the HNSW index so size matches entries.size after sweep', async () => {
         const svc = await newService();

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package/dist/controller-registry.d.ts

@@ -232,6 +232,26 @@ export declare class ControllerRegistry extends EventEmitter {
      * Create an EmbeddingService for controllers that need it.
      * Uses the config's embedding generator or creates a minimal local service.
      */
+    /**
+     * Adapt an arbitrary embedder to the contract agentdb's controllers call
+     * (#3327).
+     *
+     * ReasoningBank uses asymmetric query/passage embedding — `embedQuery()` on
+     * search, `embedPassage()` on store. Several embedders reaching here expose
+     * only `embed()`:
+     *   • agentdb's mock embedder, substituted whenever the Transformers.js
+     *     model fails to load (offline, or a failed `sharp` optional install);
+     *   • any host-supplied `embeddingGenerator` wrapper.
+     *
+     * Passing one of those through unchanged throws `... is not a function`
+     * deep inside the controller, where the bridge's catch converts it into a
+     * silent fallback — the failure this whole fix is about. Aliasing is
+     * semantically safe: a symmetric model returns the same vector for both
+     * roles, which is precisely what a single `embed()` implies.
+     *
+     * Returns null when there is nothing usable to adapt.
+     */
+    private adaptEmbedderForAgentdb;
     private createEmbeddingService;
     /**
      * Tiered store used when agentdb's HierarchicalMemory is unavailable.

package/dist/controller-registry.d.ts.map

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