@claude-flow/cli 3.47.0 → 3.48.0

package/node_modules/@claude-flow/mcp/dist/tool-registry.js

@@ -278,20 +278,28 @@ export class ToolRegistry extends EventEmitter {
         try {
             this.emit('tool:called', { name, input });
             const result = await metadata.tool.handler(input, execContext);
+            // CLI handlers return validation/runtime failures in-band. Preserve their
+            // payload while exposing the failure in the MCP envelope and metrics.
+            // A recorded task outcome with success:false alone is still valid data.
+            const isError = result !== null && typeof result === 'object'
+                && typeof result.error === 'string'
+                && result.error.trim().length > 0;
+            if (isError)
+                metadata.errorCount++;
             const duration = performance.now() - startTime;
             this.updateAverageExecutionTime(metadata, duration);
             this.logger.debug('Tool executed', {
                 name,
                 duration: `${duration.toFixed(2)}ms`,
-                success: true,
+                success: !isError,
             });
-            this.emit('tool:completed', { name, duration, success: true });
+            this.emit('tool:completed', { name, duration, success: !isError });
             return {
                 content: [{
                         type: 'text',
                         text: typeof result === 'string' ? result : JSON.stringify(result, null, 2),
                     }],
-                isError: false,
+                isError,
             };
         }
         catch (error) {

package/node_modules/@claude-flow/mcp/dist/tool-registry.js.map

@@ -1 +1 @@
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package/node_modules/@claude-flow/mcp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@claude-flow/mcp",
-  "version": "3.0.0-alpha.10",
+  "version": "3.0.0",
   "type": "module",
   "description": "Standalone MCP (Model Context Protocol) server - stdio/http/websocket transports, connection pooling, tool registry",
   "main": "dist/index.js",
@@ -10,6 +10,10 @@
     ".": "./dist/index.js",
     "./*": "./dist/*.js"
   },
+  "files": [
+    "dist",
+    "README.md"
+  ],
   "scripts": {
     "test": "vitest run",
     "build": "tsc"
@@ -31,8 +35,7 @@
     "tool-registry"
   ],
   "publishConfig": {
-    "access": "public",
-    "tag": "v3alpha"
+    "access": "public"
   },
   "rufloBundledRuntime": {
     "format": 1,

package/node_modules/@claude-flow/plugin-agent-federation/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@claude-flow/plugin-agent-federation",
-  "version": "1.0.0-alpha.18",
+  "version": "1.0.0",
   "description": "Cross-installation agent federation with zero-trust security, PII-gated data flow, and compliance-grade audit trails.",
   "homepage": "https://github.com/ruvnet/ruflo",
   "type": "module",
@@ -23,8 +23,8 @@
     "clean": "rm -rf dist"
   },
   "devDependencies": {
-    "@claude-flow/shared": "3.0.0-alpha.8",
-    "@claude-flow/security": "file:../security",
+    "@claude-flow/shared": "^3.0.0",
+    "@claude-flow/security": "^3.0.0",
     "@types/ws": "^8.18.1",
     "agentic-flow": "2.0.12-fix.8",
     "typescript": "^5.4.0",

package/node_modules/@claude-flow/security/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@claude-flow/security",
-  "version": "3.0.0-alpha.14",
+  "version": "3.0.0",
   "type": "module",
   "description": "Security module - CVE fixes, input validation, path security",
   "main": "dist/index.js",
@@ -26,8 +26,7 @@
     "vitest": "^4.1.0"
   },
   "publishConfig": {
-    "access": "public",
-    "tag": "v3alpha"
+    "access": "public"
   },
   "rufloBundledRuntime": {
     "format": 1,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@claude-flow/cli",
-  "version": "3.47.0",
+  "version": "3.48.0",
   "type": "module",
   "description": "Ruflo CLI - Enterprise AI agent orchestration with 60+ specialized agents, swarm coordination, MCP server, self-learning hooks, and vector memory for Claude Code",
   "main": "dist/src/index.js",
@@ -98,13 +98,13 @@
     "vitest": "^4.1.0"
   },
   "dependencies": {
-    "@claude-flow/cli-core": "3.7.0-alpha.6",
+    "@claude-flow/cli-core": "3.7.0",
     "@claude-flow/codex": "3.0.3",
-    "@claude-flow/mcp": "3.0.0-alpha.10",
-    "@claude-flow/neural": "3.0.0-alpha.10",
-    "@claude-flow/plugin-agent-federation": "1.0.0-alpha.18",
-    "@claude-flow/security": "3.0.0-alpha.14",
-    "@claude-flow/shared": "3.0.0-alpha.7",
+    "@claude-flow/mcp": "3.0.0",
+    "@claude-flow/neural": "3.0.0",
+    "@claude-flow/plugin-agent-federation": "1.0.0",
+    "@claude-flow/security": "3.0.0",
+    "@claude-flow/shared": "3.0.0",
     "@iarna/toml": "^2.2.5",
     "@noble/ed25519": "2.3.0",
     "@ruvector/rabitq-wasm": "0.1.0",
@@ -125,11 +125,11 @@
     "ws": "^8.21.0",
     "yaml": "^2.8.0",
     "zod": "^3.22.0",
-    "@claude-flow/memory": "3.0.0-alpha.26"
+    "@claude-flow/memory": "3.0.0"
   },
   "optionalDependencies": {
     "@agntcy/slim-bindings": "2.0.0-alpha.5",
-    "@claude-flow/memory": "3.0.0-alpha.26",
+    "@claude-flow/memory": "3.0.0",
     "@metaharness/darwin": "~0.10.2",
     "@metaharness/flywheel": "~0.1.10",
     "@metaharness/radio": "~0.1.0",

package/plugins/ruflo-metaharness/scripts/_cli-args.mjs

@@ -0,0 +1,37 @@
+// Check entry-point arguments before tool resolution, file writes, or benchmarks.
+import { basename } from 'node:path';
+import { fileURLToPath } from 'node:url';
+
+/** Options map flags to a value label, or null for a boolean switch. */
+export function guardCliArgs(scriptUrl, options, note = '') {
+  const args = process.argv.slice(2);
+  const usage = [
+    `Usage: node scripts/${basename(fileURLToPath(scriptUrl))} [options]`,
+    ...(note ? ['', note] : []),
+    '',
+    'Options:',
+    ...Object.entries(options).map(([flag, value]) => `  ${flag}${value ? ` <${value}>` : ''}`),
+    '  --help, -h  Show this help without running the command',
+  ].join('\n');
+
+  if (args.includes('--help') || args.includes('-h')) {
+    console.log(usage);
+    process.exit(0);
+  }
+  for (let i = 0; i < args.length; i++) {
+    const flag = args[i];
+    let error;
+    if (!Object.hasOwn(options, flag)) {
+      error = `Unknown argument: ${flag}`;
+    } else if (options[flag] !== null) {
+      const value = args[++i];
+      if (value === undefined || value.startsWith('--')) {
+        error = `${flag} requires a value`;
+      }
+    }
+    if (error) {
+      console.error(`${error}\n\n${usage}`);
+      process.exit(2);
+    }
+  }
+}

package/plugins/ruflo-metaharness/scripts/audit-list.mjs

@@ -16,6 +16,8 @@
 //   0  ok
 //   2  config error
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runRufloCli } from './_invoke.mjs';
 
 const NS = process.env.AUDIT_LIST_NAMESPACE || 'metaharness-audit';
@@ -24,6 +26,12 @@ const NS = process.env.AUDIT_LIST_NAMESPACE || 'metaharness-audit';
 // resolution per call, possible version skew, fails without registry access).
 // CLI_CORE=1 still opts into `npx @claude-flow/cli-core@alpha`.
 
+guardCliArgs(import.meta.url, {
+  '--limit': 'value',
+  '--since': 'value',
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = { limit: 20, since: null, format: 'table' };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/audit-trend.mjs

@@ -24,6 +24,8 @@
 //   1  --alert-on-worsening AND composite severity worsened
 //   2  config error or input not found
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { readFileSync, existsSync } from 'node:fs';
 import { runRufloCli } from './_invoke.mjs';
 // iter 38 — structural-distance drift via ADR-152 §3.1 production module.
@@ -41,6 +43,16 @@ const NS = process.env.AUDIT_TREND_NAMESPACE || 'metaharness-audit';
 // resolution per call, possible version skew, fails without registry access).
 // CLI_CORE=1 still opts into `npx @claude-flow/cli-core@alpha`.
 
+guardCliArgs(import.meta.url, {
+  '--baseline': 'value',
+  '--current': 'value',
+  '--baseline-key': 'value',
+  '--current-key': 'value',
+  '--alert-on-worsening': null,
+  '--alert-on-distance-below': 'value',
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = {
     baseline: null, current: null,

package/plugins/ruflo-metaharness/scripts/bench-parse-mcp-scan.mjs

@@ -24,9 +24,17 @@
 //   0  ok (or threshold satisfied)
 //   1  --max-mean-us exceeded by any category
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { performance } from 'node:perf_hooks';
 import { parseMcpScanText } from './_harness.mjs';
 
+guardCliArgs(import.meta.url, {
+  '--iters': 'value',
+  '--format': 'value',
+  '--max-mean-us': 'value',
+});
+
 const ARGS = (() => {
   const a = { iters: 100_000, format: 'table', maxMeanUs: null };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/bench-recordpair-overhead.mjs

@@ -21,8 +21,16 @@
 // EXIT CODES
 //   0  benchmark complete (always; this is informational, not pass/fail)
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { performance } from 'node:perf_hooks';
 
+guardCliArgs(import.meta.url, {
+  '--iters': 'value',
+  '--format': 'value',
+  '--max-overhead-ns': 'value',
+});
+
 const ARGS = (() => {
   const a = {
     iters: 1_000_000,

package/plugins/ruflo-metaharness/scripts/bench-similarity.mjs

@@ -25,9 +25,17 @@
 //   0  ok (or --max-mean-us not set / threshold satisfied)
 //   1  --max-mean-us threshold exceeded (regression)
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { performance } from 'node:perf_hooks';
 import { similarity } from './_similarity.mjs';
 
+guardCliArgs(import.meta.url, {
+  '--iters': 'value',
+  '--format': 'value',
+  '--max-mean-us': 'value',
+});
+
 const ARGS = (() => {
   const a = {
     iters: 1_000_000,

package/plugins/ruflo-metaharness/scripts/bench.mjs

@@ -18,10 +18,20 @@
 //   1  --op verify and any task malformed
 //   2  config error or upstream invocation failure
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runDarwin, emitDarwinDegradedJsonAndExit } from './_darwin.mjs';
 import { existsSync } from 'node:fs';
 import { resolve } from 'node:path';
 
+guardCliArgs(import.meta.url, {
+  '--op': 'value',
+  '--repo': 'value',
+  '--suite': 'value',
+  '--out': 'value',
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = { op: null, repo: '.', suite: null, out: null, format: 'json' };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/drift-from-history.mjs

@@ -32,6 +32,8 @@
 //   2  config / input error (no history available, etc.)
 //   3  upstream metaharness absent — degraded payload returned
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { spawnSync, spawn } from 'node:child_process';
 // iter 78 — share the iter-63 SEVERITY_RANK for the new finding-alert gate
 import { rankSeverity } from './_harness.mjs';
@@ -45,6 +47,17 @@ const NS = process.env.METAHARNESS_AUDIT_NAMESPACE || 'metaharness-audit';
 // Memory access is delegated to audit-list / oia-audit / audit-trend (they
 // call the shipping ruflo CLI through _invoke.runRufloCli — #3366).
 
+guardCliArgs(import.meta.url, {
+  '--path': 'value',
+  '--baseline-since': 'value',
+  '--baseline-key': 'value',
+  '--baseline-file': 'value',
+  '--threshold': 'value',
+  '--dry-run': null,
+  '--format': 'value',
+  '--alert-on-new-severity': 'value',
+}, "Runs a fresh audit. --dry-run skips persisting it; analysis tools still run.");
+
 const ARGS = (() => {
   const a = {
     path: '.', baselineSince: null, baselineKey: null, baselineFile: null,

package/plugins/ruflo-metaharness/scripts/evolve.mjs

@@ -48,10 +48,37 @@
 //   2  config error or evolution failure
 //   99 reserved — upstream "safety-disqualified" (propagated)
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runDarwinAsync, emitDarwinDegradedJsonAndExit, importGepa } from './_darwin.mjs';
 import { existsSync, readdirSync, readFileSync } from 'node:fs';
 import { join, resolve } from 'node:path';
 
+guardCliArgs(import.meta.url, {
+  '--repo': 'value',
+  '--generations': 'value',
+  '--children': 'value',
+  '--concurrency': 'value',
+  '--seed': 'value',
+  '--sandbox': 'value',
+  '--selection': 'value',
+  '--crossover': null,
+  '--epistasis': null,
+  '--curriculum': null,
+  '--risk-budget': 'value',
+  '--fdr': 'value',
+  '--tie': 'value',
+  '--bench': 'value',
+  '--mutator': 'value',
+  '--ruvllm-url': 'value',
+  '--ruvllm-model': 'value',
+  '--confirm': null,
+  '--alert-on-no-improvement': null,
+  '--diagnose': null,
+  '--format': 'value',
+  '--timeout-ms': 'value',
+});
+
 const ARGS = (() => {
   const a = {
     repo: '.',

package/plugins/ruflo-metaharness/scripts/genome.mjs

@@ -14,8 +14,16 @@
 //   1  --alert-on-risk-above threshold breached
 //   2  config error or genome failure (no valid readiness report)
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runMetaharness, emitDegradedJsonAndExit } from './_harness.mjs';
 
+guardCliArgs(import.meta.url, {
+  '--path': 'value',
+  '--alert-on-risk-above': 'value',
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = { path: '.', format: 'json', alertRiskAbove: null };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/gepa.mjs

@@ -35,12 +35,24 @@
 //   1  --alert-on-invalid and validate found errors
 //   2  config error (bad op / missing file)
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { readFileSync, existsSync } from 'node:fs';
 import { importGepa, DARWIN_VERSION_PIN } from './_darwin.mjs';
 
 // Pin lives in _darwin.mjs (DARWIN_VERSION_PIN) — single source of truth.
 const DARWIN_PIN_VERSION = DARWIN_VERSION_PIN.split('@').pop();
 
+guardCliArgs(import.meta.url, {
+  '--op': 'value',
+  '--path': 'value',
+  '--transcript': 'value',
+  '--ext': 'value',
+  '--glob': 'value',
+  '--alert-on-invalid': null,
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = {
     op: null,

package/plugins/ruflo-metaharness/scripts/learn.mjs

@@ -26,9 +26,22 @@
 //   1  --alert-on-fail and the learn run reported failure
 //   2  config error (bad arg)
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { existsSync } from 'node:fs';
 import { runMetaharnessAsync, emitDegradedJsonAndExit } from './_harness.mjs';
 
+guardCliArgs(import.meta.url, {
+  '--host': 'value',
+  '--model': 'value',
+  '--slice': 'value',
+  '--repo': 'value',
+  '--run': null,
+  '--alert-on-fail': null,
+  '--format': 'value',
+  '--timeout-ms': 'value',
+});
+
 const ARGS = (() => {
   const a = {
     host: null,

package/plugins/ruflo-metaharness/scripts/mcp-scan.mjs

@@ -20,8 +20,16 @@
 // can use the same parser without duplicating logic.
 // iter 63 — SEVERITY_RANK also moves to _harness.mjs (single source of
 // truth; previously this file had a literal that diverged from oia-audit's).
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runHarness, emitDegradedJsonAndExit, parseMcpScanText, SEVERITY_RANK, rankSeverity } from './_harness.mjs';
 
+guardCliArgs(import.meta.url, {
+  '--path': 'value',
+  '--fail-on': 'value',
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = { path: '.', format: 'json', failOn: 'high' };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/mint.mjs

@@ -15,11 +15,22 @@
 //   node scripts/mint.mjs --name my-harness --template vertical:coding --host claude-code --target /tmp/foo --confirm
 //     # → actually scaffolds
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runMetaharness, emitDegradedJsonAndExit } from './_harness.mjs';
 import { existsSync, mkdirSync } from 'node:fs';
 import { resolve, dirname, basename } from 'node:path';
 import { tmpdir } from 'node:os';
 
+guardCliArgs(import.meta.url, {
+  '--name': 'value',
+  '--template': 'value',
+  '--host': 'value',
+  '--target': 'value',
+  '--confirm': null,
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = { name: null, template: null, host: 'claude-code', target: null, confirm: false, format: 'json' };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/oia-audit.mjs

@@ -24,6 +24,8 @@
 //   1  --alert-on-worst threshold exceeded
 //   2  config error or audit failure
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runRufloCli } from './_invoke.mjs';
 // iter 63 — SEVERITY_RANK + rankSeverity consolidated to _harness.mjs
 // (was local in iter 62; now shared with audit-trend + mcp-scan).
@@ -38,6 +40,13 @@ const NS = process.env.OIA_AUDIT_NAMESPACE || 'metaharness-audit';
 // resolution per call, possible version skew, fails without registry access).
 // CLI_CORE=1 still opts into `npx @claude-flow/cli-core@alpha`.
 
+guardCliArgs(import.meta.url, {
+  '--path': 'value',
+  '--dry-run': null,
+  '--alert-on-worst': 'value',
+  '--format': 'value',
+}, "Runs and persists an audit by default. --dry-run skips the memory write; analysis tools still run.");
+
 const ARGS = (() => {
   const a = { path: '.', format: 'json', dryRun: false, alertWorst: null };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/router-parallel-analyze.mjs

@@ -33,8 +33,16 @@
 //   1  --strict requested AND at least one criterion failed (NOT promotable)
 //   2  config error or input file missing/malformed
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { readFileSync, existsSync } from 'node:fs';
 
+guardCliArgs(import.meta.url, {
+  '--input': 'value',
+  '--format': 'value',
+  '--strict': null,
+});
+
 const ARGS = (() => {
   const a = { input: '.swarm/router-parallel.jsonl', format: 'table', strict: false };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/score.mjs

@@ -16,8 +16,16 @@
 //   1  --alert-on-fit-below threshold breached
 //   2  config error or scoring failure
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runMetaharness, emitDegradedJsonAndExit } from './_harness.mjs';
 
+guardCliArgs(import.meta.url, {
+  '--path': 'value',
+  '--alert-on-fit-below': 'value',
+  '--format': 'value',
+});
+
 const ARGS = (() => {
   const a = { path: '.', format: 'json', alertFitBelow: null };
   for (let i = 2; i < process.argv.length; i++) {

package/plugins/ruflo-metaharness/scripts/security-bench.mjs

@@ -30,8 +30,19 @@
 //   1  --alert-on-fail and any acceptance gate failed
 //   2  config error or bench infrastructure failure
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { runDarwinAsync, emitDarwinDegradedJsonAndExit } from './_darwin.mjs';
 
+guardCliArgs(import.meta.url, {
+  '--population': 'value',
+  '--cycles': 'value',
+  '--seed': 'value',
+  '--alert-on-fail': null,
+  '--format': 'value',
+  '--timeout-ms': 'value',
+}, "Runs the security benchmark. This command has no plan-only mode.");
+
 const ARGS = (() => {
   const a = {
     population: 2,

package/plugins/ruflo-metaharness/scripts/similarity.mjs

@@ -23,6 +23,8 @@
 //     a structured `{ degraded: true, reason: ... }` payload on stdout
 //   - CI-gate ready: smoke step 17y locks this contract
 
+import { guardCliArgs } from './_cli-args.mjs';
+
 import { readFileSync, existsSync } from 'node:fs';
 import { runRufloCli } from './_invoke.mjs';
 import { similarity } from './_similarity.mjs';
@@ -33,6 +35,16 @@ const NS = process.env.HARNESS_SIMILARITY_NAMESPACE || 'metaharness-audit';
 // resolution per call, possible version skew, fails without registry access).
 // CLI_CORE=1 still opts into `npx @claude-flow/cli-core@alpha`.
 
+guardCliArgs(import.meta.url, {
+  '--a': 'value',
+  '--b': 'value',
+  '--a-key': 'value',
+  '--b-key': 'value',
+  '--per-dimension': null,
+  '--format': 'value',
+  '--alert-below': 'value',
+});
+
 const ARGS = (() => {
   const a = {
     aFile: null, bFile: null,