@claude-flow/cli 3.42.2 → 3.42.3

package/.claude/helpers/intelligence.cjs

@@ -1,1169 +1,1169 @@
-#!/usr/bin/env node
-/**
- * Intelligence Layer (ADR-050)
- *
- * Closes the intelligence loop by wiring PageRank-ranked memory into
- * the hook system. Pure CJS — no ESM imports of @claude-flow/memory.
- *
- * Data files (all under .claude-flow/data/):
- *   auto-memory-store.json  — written by auto-memory-hook.mjs
- *   graph-state.json        — serialized graph (nodes + edges + pageRanks)
- *   ranked-context.json     — pre-computed ranked entries for fast lookup
- *   pending-insights.jsonl  — append-only edit/task log
- */
-
-'use strict';
-
-const fs = require('fs');
-const path = require('path');
-
-function resolveProjectRoot(startDir) {
-  if (process.env.CLAUDE_PROJECT_DIR) {
-    return path.resolve(process.env.CLAUDE_PROJECT_DIR);
-  }
-  let dir = path.resolve(startDir || process.cwd());
-  while (true) {
-    if (fs.existsSync(path.join(dir, '.git')) ||
-        fs.existsSync(path.join(dir, '.claude-flow'))) {
-      return dir;
-    }
-    const parent = path.dirname(dir);
-    if (parent === dir) return path.resolve(startDir || process.cwd());
-    dir = parent;
-  }
-}
-
-const PROJECT_ROOT = resolveProjectRoot(process.cwd());
-const DATA_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'data');
-const STORE_PATH = path.join(DATA_DIR, 'auto-memory-store.json');
-const GRAPH_PATH = path.join(DATA_DIR, 'graph-state.json');
-const RANKED_PATH = path.join(DATA_DIR, 'ranked-context.json');
-const PENDING_PATH = path.join(DATA_DIR, 'pending-insights.jsonl');
-const LEGACY_PENDING_PATH = path.join(process.cwd(), '.claude-flow', 'data', 'pending-insights.jsonl');
-const SESSION_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'sessions');
-const SESSION_FILE = path.join(SESSION_DIR, 'current.json');
-
-// ── Safety limits (fixes #1530, #1531) ─────────────────────────────────────
-const MAX_DATA_FILE_SIZE = 10 * 1024 * 1024; // 10 MB — skip files larger than this
-const MAX_GRAPH_NODES = 5000;                 // skip PageRank if graph exceeds this
-// #2628: similarity edges used to compare every pair in every category.
-// Keep exact graph behavior for normal stores, but never let a session-end
-// hook enter an unbounded O(n²) pass. Temporal edges remain linear and are
-// always retained when the similarity pass is skipped.
-const MAX_SIMILARITY_COMPARISONS = 100000;
-
-// ── Stop words for trigram matching ──────────────────────────────────────────
-
-const STOP_WORDS = new Set([
-  'the', 'a', 'an', 'is', 'are', 'was', 'were', 'be', 'been', 'being',
-  'have', 'has', 'had', 'do', 'does', 'did', 'will', 'would', 'could',
-  'should', 'may', 'might', 'shall', 'can', 'to', 'of', 'in', 'for',
-  'on', 'with', 'at', 'by', 'from', 'as', 'into', 'through', 'during',
-  'before', 'after', 'and', 'but', 'or', 'nor', 'not', 'so', 'yet',
-  'both', 'either', 'neither', 'each', 'every', 'all', 'any', 'few',
-  'more', 'most', 'other', 'some', 'such', 'no', 'only', 'own', 'same',
-  'than', 'too', 'very', 'just', 'because', 'if', 'when', 'which',
-  'who', 'whom', 'this', 'that', 'these', 'those', 'it', 'its',
-]);
-
-// ── Helpers ──────────────────────────────────────────────────────────────────
-
-function ensureDataDir() {
-  if (!fs.existsSync(DATA_DIR)) fs.mkdirSync(DATA_DIR, { recursive: true });
-  // Recover signal written by older helpers under a subdirectory cwd. Keep
-  // the legacy file intact and append only lines not already present.
-  if (path.resolve(LEGACY_PENDING_PATH) !== path.resolve(PENDING_PATH) &&
-      fs.existsSync(LEGACY_PENDING_PATH)) {
-    try {
-      const existing = fs.existsSync(PENDING_PATH)
-        ? new Set(fs.readFileSync(PENDING_PATH, 'utf-8').split('\n').filter(Boolean))
-        : new Set();
-      const recovered = fs.readFileSync(LEGACY_PENDING_PATH, 'utf-8')
-        .split('\n')
-        .filter(line => line && !existing.has(line));
-      if (recovered.length > 0) {
-        fs.appendFileSync(PENDING_PATH, recovered.join('\n') + '\n', 'utf-8');
-      }
-    } catch { /* migration is best-effort; never block hook execution */ }
-  }
-}
-
-function readJSON(filePath) {
-  // Safety: skip files exceeding MAX_DATA_FILE_SIZE (#1531)
-  try {
-    const stat = fs.statSync(filePath);
-    if (stat.size > MAX_DATA_FILE_SIZE) {
-      process.stderr.write("[INTELLIGENCE] WARN: Skipping " + path.basename(filePath) + " (" + Math.round(stat.size / 1048576) + "MB exceeds 10MB limit)\n");
-      return null;
-    }
-  } catch { /* file may not exist yet */ }
-  try {
-    if (fs.existsSync(filePath)) return JSON.parse(fs.readFileSync(filePath, 'utf-8'));
-  } catch { /* corrupt file — start fresh */ }
-  return null;
-}
-
-function writeJSON(filePath, data) {
-  ensureDataDir();
-  fs.writeFileSync(filePath, JSON.stringify(data, null, 2), 'utf-8');
-}
-
-function tokenize(text) {
-  if (!text) return [];
-  return text.toLowerCase()
-    .replace(/[^a-z0-9\s-]/g, ' ')
-    .split(/\s+/)
-    .filter(w => w.length > 2 && !STOP_WORDS.has(w));
-}
-
-function trigrams(words) {
-  const t = new Set();
-  for (const w of words) {
-    for (let i = 0; i <= w.length - 3; i++) t.add(w.slice(i, i + 3));
-  }
-  return t;
-}
-
-function jaccardSimilarity(setA, setB) {
-  if (setA.size === 0 && setB.size === 0) return 0;
-  let intersection = 0;
-  for (const item of setA) { if (setB.has(item)) intersection++; }
-  return intersection / (setA.size + setB.size - intersection);
-}
-
-// ── Deduplication helper (fixes #1518) ──────────────────────────────────────
-
-function deduplicateById(entries) {
-  if (!entries || !Array.isArray(entries)) return entries;
-  const seen = new Map();
-  for (const entry of entries) {
-    const id = entry.id || entry.key;
-    if (id) {
-      seen.set(id, entry);
-    } else {
-      seen.set(`__no_id_${seen.size}`, entry);
-    }
-  }
-  return Array.from(seen.values());
-}
-
-// ADR-095 G6 — content-hash dedup. The April audit measured 5,706 entries
-// in the auto-memory store with only ~20 unique by content; 5,686 dupes
-// were the same MEMORY.md sections imported from sibling project dirs
-// with different IDs. deduplicateById can't catch these (the IDs really
-// are different); we need a content fingerprint.
-//
-// Fast non-cryptographic fingerprint — collisions on 64-bit FNV-1a are
-// vanishingly rare for human prose at the scale of an auto-memory store.
-// Whitespace-normalized so trivially-different formatting doesn't bypass dedup.
-function fingerprintContent(text) {
-  if (typeof text !== 'string' || text.length === 0) return '0';
-  const norm = text.replace(/\s+/g, ' ').trim().toLowerCase();
-  // FNV-1a 64-bit (split into 32-bit halves to stay within Number safe int)
-  let h1 = 0x811c9dc5, h2 = 0xcbf29ce4;
-  for (let i = 0; i < norm.length; i++) {
-    const c = norm.charCodeAt(i);
-    h1 ^= c; h1 = Math.imul(h1, 0x01000193) >>> 0;
-    h2 ^= c; h2 = Math.imul(h2, 0x100000001b3 & 0xffffffff) >>> 0;
-  }
-  return `${h1.toString(16)}_${h2.toString(16)}_${norm.length}`;
-}
-
-// #2920 — aggregate content fingerprint for a whole store, used to detect
-// same-ID content edits (e.g. hand-editing a MEMORY.md section's body while
-// its heading/key, and therefore its generated ID, stays the same). Neither
-// entry count nor ID set changes on a same-ID edit, so any staleness check
-// based only on those two signals misses it; this folds each entry's own
-// content fingerprint into one combined value that does change.
-function storeFingerprint(entries) {
-  if (!entries || !entries.length) return '0';
-  const parts = entries
-    .map((e) => `${e.id || e.key || ''}:${fingerprintContent(e.content || e.summary || e.value || '')}`)
-    .sort();
-  return fingerprintContent(parts.join('|'));
-}
-
-function deduplicateByContent(entries) {
-  if (!entries || !Array.isArray(entries)) return entries;
-  const seen = new Map();
-  for (const entry of entries) {
-    const content = entry.content || entry.summary || entry.value || '';
-    const normalizedContent = typeof content === 'string' ? content : JSON.stringify(content);
-    // Content-less records can still represent distinct graph nodes. There is
-    // no content identity to prove they are duplicates, so preserve them.
-    if (!normalizedContent || !normalizedContent.trim()) {
-      seen.set(`__no_content_${seen.size}`, entry);
-      continue;
-    }
-    const fp = fingerprintContent(normalizedContent);
-    if (!seen.has(fp)) {
-      seen.set(fp, entry);
-    } else {
-      // Keep the entry with the higher accessCount or earlier createdAt
-      const existing = seen.get(fp);
-      const existingAccess = existing.accessCount || 0;
-      const candidateAccess = entry.accessCount || 0;
-      if (candidateAccess > existingAccess) seen.set(fp, entry);
-    }
-  }
-  return Array.from(seen.values());
-}
-
-// ── Session state helpers ────────────────────────────────────────────────────
-
-function sessionGet(key) {
-  try {
-    if (!fs.existsSync(SESSION_FILE)) return null;
-    const session = JSON.parse(fs.readFileSync(SESSION_FILE, 'utf-8'));
-    return key ? (session.context || {})[key] : session.context;
-  } catch { return null; }
-}
-
-function sessionSet(key, value) {
-  try {
-    if (!fs.existsSync(SESSION_DIR)) fs.mkdirSync(SESSION_DIR, { recursive: true });
-    let session = {};
-    if (fs.existsSync(SESSION_FILE)) {
-      session = JSON.parse(fs.readFileSync(SESSION_FILE, 'utf-8'));
-    }
-    if (!session.context) session.context = {};
-    session.context[key] = value;
-    session.updatedAt = new Date().toISOString();
-    fs.writeFileSync(SESSION_FILE, JSON.stringify(session, null, 2), 'utf-8');
-  } catch { /* best effort */ }
-}
-
-// ── PageRank ─────────────────────────────────────────────────────────────────
-
-function computePageRank(nodes, edges, damping, maxIter) {
-  damping = damping || 0.85;
-  maxIter = maxIter || 30;
-
-  const ids = Object.keys(nodes);
-  const n = ids.length;
-  if (n === 0) return {};
-
-  // Build adjacency: outgoing edges per node
-  const outLinks = {};
-  const inLinks = {};
-  for (const id of ids) { outLinks[id] = []; inLinks[id] = []; }
-  for (const edge of edges) {
-    if (outLinks[edge.sourceId]) outLinks[edge.sourceId].push(edge.targetId);
-    if (inLinks[edge.targetId]) inLinks[edge.targetId].push(edge.sourceId);
-  }
-
-  // Initialize ranks
-  const ranks = {};
-  for (const id of ids) ranks[id] = 1 / n;
-
-  // Power iteration (with dangling node redistribution)
-  for (let iter = 0; iter < maxIter; iter++) {
-    const newRanks = {};
-    let diff = 0;
-
-    // Collect rank from dangling nodes (no outgoing edges)
-    let danglingSum = 0;
-    for (const id of ids) {
-      if (outLinks[id].length === 0) danglingSum += ranks[id];
-    }
-
-    for (const id of ids) {
-      let sum = 0;
-      for (const src of inLinks[id]) {
-        const outCount = outLinks[src].length;
-        if (outCount > 0) sum += ranks[src] / outCount;
-      }
-      // Dangling rank distributed evenly + teleport
-      newRanks[id] = (1 - damping) / n + damping * (sum + danglingSum / n);
-      diff += Math.abs(newRanks[id] - ranks[id]);
-    }
-
-    for (const id of ids) ranks[id] = newRanks[id];
-    if (diff < 1e-6) break; // converged
-  }
-
-  return ranks;
-}
-
-// ── Edge building ────────────────────────────────────────────────────────────
-
-function buildEdges(entries) {
-  const edges = [];
-  const byCategory = {};
-
-  for (const entry of entries) {
-    const cat = entry.category || entry.namespace || 'default';
-    if (!byCategory[cat]) byCategory[cat] = [];
-    byCategory[cat].push(entry);
-  }
-
-  // Temporal edges: entries from same sourceFile
-  const byFile = {};
-  for (const entry of entries) {
-    const file = (entry.metadata && entry.metadata.sourceFile) || null;
-    if (file) {
-      if (!byFile[file]) byFile[file] = [];
-      byFile[file].push(entry);
-    }
-  }
-  for (const file of Object.keys(byFile)) {
-    const group = byFile[file];
-    for (let i = 0; i < group.length - 1; i++) {
-      edges.push({
-        sourceId: group[i].id,
-        targetId: group[i + 1].id,
-        type: 'temporal',
-        weight: 0.5,
-      });
-    }
-  }
-
-  let similarityComparisons = 0;
-  for (const group of Object.values(byCategory)) {
-    similarityComparisons += (group.length * (group.length - 1)) / 2;
-    if (similarityComparisons > MAX_SIMILARITY_COMPARISONS) break;
-  }
-
-  // Similarity edges within categories (Jaccard > 0.3).
-  // ADR-095 G6 perf: hoist the trigram computation outside the inner
-  // loop. Previously we re-tokenized + re-trigrammed group[j] for every
-  // i — O(n²) extra work for nothing. Now compute once per entry.
-  // #2628: the old unconditional nested loop blocked session exit for tens
-  // of seconds on accumulated stores. Skip only the quadratic similarity
-  // layer when its deterministic pair count exceeds the budget; the linear
-  // temporal graph above is still complete.
-  if (similarityComparisons > MAX_SIMILARITY_COMPARISONS) {
-    process.stderr.write(
-      `[INTELLIGENCE] WARN: Similarity graph needs >${MAX_SIMILARITY_COMPARISONS} comparisons; ` +
-      'skipping similarity edges (temporal edges retained)\n'
-    );
-    return edges;
-  }
-
-  for (const cat of Object.keys(byCategory)) {
-    const group = byCategory[cat];
-    if (group.length < 2) continue;
-
-    // Cache trigram sets for every entry in the group.
-    const triCache = new Array(group.length);
-    for (let i = 0; i < group.length; i++) {
-      triCache[i] = trigrams(tokenize(group[i].content || group[i].summary || ''));
-    }
-
-    for (let i = 0; i < group.length; i++) {
-      const triA = triCache[i];
-      for (let j = i + 1; j < group.length; j++) {
-        const sim = jaccardSimilarity(triA, triCache[j]);
-        if (sim > 0.3) {
-          edges.push({
-            sourceId: group[i].id,
-            targetId: group[j].id,
-            type: 'similar',
-            weight: sim,
-          });
-        }
-      }
-    }
-  }
-
-  return edges;
-}
-
-// ── Bootstrap from MEMORY.md files ───────────────────────────────────────────
-
-/**
- * If auto-memory-store.json is empty, bootstrap by parsing MEMORY.md and
- * topic files from the auto-memory directory. This removes the dependency
- * on @claude-flow/memory for the initial seed.
- */
-function bootstrapFromMemoryFiles() {
-  const entries = [];
-  const cwd = PROJECT_ROOT;
-
-  // Search for auto-memory directories
-  const candidates = [
-    // Claude Code auto-memory (project-scoped)
-    path.join(require('os').homedir(), '.claude', 'projects'),
-    // Local project memory
-    path.join(cwd, '.claude-flow', 'memory'),
-    path.join(cwd, '.claude', 'memory'),
-  ];
-
-  // Find MEMORY.md in project-scoped dirs
-  for (const base of candidates) {
-    if (!fs.existsSync(base)) continue;
-
-    // For the projects dir, scope to CURRENT project only (not all 51+ dirs)
-    if (base.endsWith('projects')) {
-      try {
-        // Match Claude Code's project-dir slug: every non-alphanumeric char -> '-'
-        // (e.g. "G:\\My Drive\\TJ_Vault" -> "G--My-Drive-TJ-Vault"). The old version
-        // only handled POSIX '/', so on Windows the slug kept ':' and '\\' and never
-        // matched the real <projects>/<slug>/memory dir — bootstrap found nothing (FIX 5).
-        const projectSlug = cwd.replace(/[^a-zA-Z0-9]/g, '-');
-        const memDir = path.join(base, projectSlug, 'memory');
-        if (fs.existsSync(memDir)) {
-          parseMemoryDir(memDir, entries);
-        }
-      } catch { /* skip */ }
-    } else if (fs.existsSync(base)) {
-      parseMemoryDir(base, entries);
-    }
-  }
-
-  return entries;
-}
-
-// Truncation transparency (FIX 4): mark the cut with an ellipsis and warn under
-// debug, so later reasoning isn't silently built on severed text.
-const CLIP_DEBUG = !!(process.env.RUFLO_DEBUG || process.env.DEBUG);
-function clip(text, max, label) {
-  text = text == null ? '' : String(text);
-  if (text.length <= max) return text;
-  if (CLIP_DEBUG) process.stderr.write(`[INTELLIGENCE] WARN: truncated ${label || 'value'} from ${text.length} to ${max} chars\n`);
-  return text.slice(0, max - 1) + '…';
-}
-
-function parseMemoryDir(dir, entries) {
-  try {
-    const files = fs.readdirSync(dir).filter(f => f.endsWith('.md'));
-    for (const file of files) {
-      const filePath = path.join(dir, file);
-      const content = fs.readFileSync(filePath, 'utf-8');
-      if (!content.trim()) continue;
-
-      // Parse markdown sections as separate entries
-      const sections = content.split(/^##?\s+/m).filter(Boolean);
-      for (let sIdx = 0; sIdx < sections.length; sIdx++) {
-        const section = sections[sIdx];
-        const lines = section.trim().split('\n');
-        const title = lines[0].trim();
-        const body = lines.slice(1).join('\n').trim();
-        if (!body || body.length < 10) continue;
-
-        const id = `mem-${file.replace('.md', '')}-${title.replace(/[^a-z0-9]/gi, '-').toLowerCase().slice(0, 30)}-${sIdx}`;
-        entries.push({
-          id,
-          key: title.toLowerCase().replace(/[^a-z0-9]+/g, '-').slice(0, 50),
-          content: clip(body, 500, 'memory content'),
-          summary: title,
-          namespace: file === 'MEMORY.md' ? 'core' : file.replace('.md', ''),
-          type: 'semantic',
-          metadata: { sourceFile: filePath, bootstrapped: true },
-          createdAt: Date.now(),
-        });
-      }
-    }
-  } catch { /* skip unreadable dirs */ }
-}
-
-// ── Exported functions ───────────────────────────────────────────────────────
-
-/**
- * init() — Called from session-restore. Budget: <200ms.
- * Reads auto-memory-store.json, builds graph, computes PageRank, writes caches.
- * If store is empty, bootstraps from MEMORY.md files directly.
- */
-function init() {
-  ensureDataDir();
-
-  // Check if graph-state.json is fresh (within 60s of store)
-  const graphState = readJSON(GRAPH_PATH);
-  let store = readJSON(STORE_PATH);
-
-  // Bootstrap from MEMORY.md files if store is empty
-  if (!store || !Array.isArray(store) || store.length === 0) {
-    const bootstrapped = bootstrapFromMemoryFiles();
-    if (bootstrapped.length > 0) {
-      store = bootstrapped;
-      writeJSON(STORE_PATH, store);
-    } else {
-      return { nodes: 0, edges: 0, message: 'No memory entries to index' };
-    }
-  }
-
-  // Deduplicate store entries by ID (fixes #1518 — 194MB → ~79KB)
-  let deduped = deduplicateById(store);
-  // ADR-095 G6: also dedupe by content fingerprint. The April audit
-  // measured 5,706 entries with only ~20 unique by content because the
-  // same MEMORY.md sections get imported from sibling project dirs with
-  // different IDs. deduplicateById can't catch that; deduplicateByContent
-  // can. Cuts the graph from O(n²) over near-identical duplicates down
-  // to O(unique²), which is the difference between a 100MB graph-state
-  // and a kilobytes-scale one for typical workloads.
-  const beforeContentDedup = deduped.length;
-  deduped = deduplicateByContent(deduped);
-  if (deduped.length < store.length) {
-    process.stderr.write(
-      `[INTELLIGENCE] Deduped store: ${store.length} -> ${deduped.length} entries ` +
-      `(by-id: ${store.length - beforeContentDedup} dropped, by-content: ${beforeContentDedup - deduped.length} dropped)\n`
-    );
-    writeJSON(STORE_PATH, deduped);
-  }
-
-  // Skip rebuild if graph is fresh and store hasn't changed. #2920: nodeCount
-  // alone doesn't detect a same-ID content edit (e.g. hand-editing a
-  // MEMORY.md section's body while its heading/key stays the same) — the
-  // count and ID set are unchanged, so a count-only check returns a stale
-  // cache hit and never refreshes ranked-context.json. Require the content
-  // fingerprint to match too.
-  const currentFingerprint = storeFingerprint(deduped);
-  if (graphState && graphState.nodeCount === deduped.length && graphState.contentFingerprint === currentFingerprint) {
-    const age = Date.now() - (graphState.updatedAt || 0);
-    if (age < 60000) {
-      return {
-        nodes: graphState.nodeCount || Object.keys(graphState.nodes || {}).length,
-        edges: (graphState.edges || []).length,
-        message: 'Graph cache hit',
-      };
-    }
-  }
-
-  // Build nodes from deduped entries
-  const nodes = {};
-  for (const entry of deduped) {
-    const id = entry.id || entry.key || `entry-${Math.random().toString(36).slice(2, 8)}`;
-    nodes[id] = {
-      id,
-      category: entry.namespace || entry.type || 'default',
-      confidence: (entry.metadata && entry.metadata.confidence) || 0.5,
-      accessCount: (entry.metadata && entry.metadata.accessCount) || 0,
-      createdAt: entry.createdAt || Date.now(),
-    };
-    // Ensure entry has id for edge building
-    entry.id = id;
-  }
-
-  // Build edges
-  const edges = buildEdges(deduped);
-
-  // Compute PageRank (skip if graph too large — #1531)
-  const nodeCount = Object.keys(nodes).length;
-  let pageRanks = {};
-  if (nodeCount > MAX_GRAPH_NODES) {
-    process.stderr.write("[INTELLIGENCE] WARN: Graph has " + nodeCount + " nodes (>" + MAX_GRAPH_NODES + "), skipping PageRank\n");
-    for (const id of Object.keys(nodes)) pageRanks[id] = 1 / nodeCount;
-  } else {
-    pageRanks = computePageRank(nodes, edges, 0.85, 30);
-  }
-
-  // Write graph state
-  const graph = {
-    version: 1,
-    updatedAt: Date.now(),
-    nodeCount: Object.keys(nodes).length,
-    contentFingerprint: currentFingerprint,
-    nodes,
-    edges,
-    pageRanks,
-  };
-  writeJSON(GRAPH_PATH, graph);
-
-  // Build ranked context for fast lookup
-  const rankedEntries = deduped.map(entry => {
-    const id = entry.id;
-    const content = entry.content || entry.value || '';
-    const summary = entry.summary || entry.key || '';
-    const words = tokenize(content + ' ' + summary);
-    return {
-      id,
-      content,
-      summary,
-      category: entry.namespace || entry.type || 'default',
-      confidence: nodes[id] ? nodes[id].confidence : 0.5,
-      pageRank: pageRanks[id] || 0,
-      accessCount: nodes[id] ? nodes[id].accessCount : 0,
-      words,
-    };
-  }).sort((a, b) => {
-    const scoreA = 0.6 * a.pageRank + 0.4 * a.confidence;
-    const scoreB = 0.6 * b.pageRank + 0.4 * b.confidence;
-    return scoreB - scoreA;
-  });
-
-  const ranked = {
-    version: 1,
-    computedAt: Date.now(),
-    entries: rankedEntries,
-  };
-  writeJSON(RANKED_PATH, ranked);
-
-  return {
-    nodes: Object.keys(nodes).length,
-    edges: edges.length,
-    message: 'Graph built and ranked',
-  };
-}
-
-/**
- * getContext(prompt) — Called from route. Budget: <15ms.
- * Matches prompt to ranked entries, returns top-5 formatted context.
- */
-function getContext(prompt) {
-  if (!prompt) return null;
-
-  const ranked = readJSON(RANKED_PATH);
-  if (!ranked || !ranked.entries || ranked.entries.length === 0) return null;
-
-  const promptWords = tokenize(prompt);
-  if (promptWords.length === 0) return null;
-  const promptTrigrams = trigrams(promptWords);
-
-  const ALPHA = 0.6; // content match weight
-  const MIN_THRESHOLD = 0.05;
-  const TOP_K = 5;
-
-  // Score each entry
-  const scored = [];
-  for (const entry of ranked.entries) {
-    const entryTrigrams = trigrams(entry.words || []);
-    const contentMatch = jaccardSimilarity(promptTrigrams, entryTrigrams);
-    const score = ALPHA * contentMatch + (1 - ALPHA) * (entry.pageRank || 0);
-    if (score >= MIN_THRESHOLD) {
-      scored.push({ ...entry, score });
-    }
-  }
-
-  if (scored.length === 0) return null;
-
-  // Sort by score descending, take top-K
-  scored.sort((a, b) => b.score - a.score);
-  const topEntries = scored.slice(0, TOP_K);
-
-  // Boost previously matched patterns (implicit success: user continued working)
-  const prevMatched = sessionGet('lastMatchedPatterns');
-
-  // Store NEW matched IDs in session state for feedback
-  const matchedIds = topEntries.map(e => e.id);
-  sessionSet('lastMatchedPatterns', matchedIds);
-
-  // Only boost previous if they differ from current (avoid double-boosting)
-  if (prevMatched && Array.isArray(prevMatched)) {
-    const newSet = new Set(matchedIds);
-    const toBoost = prevMatched.filter(id => !newSet.has(id));
-    if (toBoost.length > 0) boostConfidence(toBoost, 0.03);
-  }
-
-  // Format output
-  const lines = ['[INTELLIGENCE] Relevant patterns for this task:'];
-  for (let i = 0; i < topEntries.length; i++) {
-    const e = topEntries[i];
-    const display = (e.summary || e.content || '').slice(0, 80);
-    const accessed = e.accessCount || 0;
-    lines.push(`  * (${e.score.toFixed(2)}) ${display} [rank #${i + 1}, ${accessed}x accessed]`);
-  }
-
-  return lines.join('\n');
-}
-
-/**
- * recordEdit(file) — Called from post-edit. Budget: <2ms.
- * Appends to pending-insights.jsonl.
- */
-function recordEdit(file, success) {
-  ensureDataDir();
-  const entry = JSON.stringify({
-    type: 'edit',
-    file: file || 'unknown',
-    // ADR-174: record failures too, not just successes — the learning substrate
-    // needs negative examples. Defaults true; an explicit false is a failed edit.
-    success: success !== false,
-    timestamp: Date.now(),
-    sessionId: sessionGet('sessionId') || null,
-  });
-  fs.appendFileSync(PENDING_PATH, entry + '\n', 'utf-8');
-  // Runaway-storage guard: pending-insights is append-only and only drained by
-  // consolidation. If it grows past ~512KB (thousands of un-consolidated edits
-  // — e.g. the daemon never ran), keep only the most recent 2000 lines so it
-  // can never grow unbounded. Cheap (a statSync per edit; rewrite only when over).
-  try {
-    if (fs.statSync(PENDING_PATH).size > 512 * 1024) {
-      const lines = fs.readFileSync(PENDING_PATH, 'utf-8').split('\n').filter(Boolean);
-      if (lines.length > 2000) fs.writeFileSync(PENDING_PATH, lines.slice(-2000).join('\n') + '\n', 'utf-8');
-    }
-  } catch (e) { /* non-fatal */ }
-}
-
-/**
- * feedback(success) — Called from post-task. Budget: <10ms.
- * Boosts or decays confidence for last-matched patterns.
- */
-function feedback(success) {
-  const matchedIds = sessionGet('lastMatchedPatterns');
-  if (!matchedIds || !Array.isArray(matchedIds)) return;
-
-  const amount = success ? 0.05 : -0.02;
-  boostConfidence(matchedIds, amount);
-}
-
-function boostConfidence(ids, amount) {
-  const ranked = readJSON(RANKED_PATH);
-  if (!ranked || !ranked.entries) return;
-
-  let changed = false;
-  for (const entry of ranked.entries) {
-    if (ids.includes(entry.id)) {
-      entry.confidence = Math.max(0, Math.min(1, (entry.confidence || 0.5) + amount));
-      entry.accessCount = (entry.accessCount || 0) + 1;
-      changed = true;
-    }
-  }
-
-  if (changed) writeJSON(RANKED_PATH, ranked);
-
-  // Also update graph-state confidence
-  const graph = readJSON(GRAPH_PATH);
-  if (graph && graph.nodes) {
-    for (const id of ids) {
-      if (graph.nodes[id]) {
-        graph.nodes[id].confidence = Math.max(0, Math.min(1, (graph.nodes[id].confidence || 0.5) + amount));
-        graph.nodes[id].accessCount = (graph.nodes[id].accessCount || 0) + 1;
-      }
-    }
-    writeJSON(GRAPH_PATH, graph);
-  }
-}
-
-/**
- * consolidate() — Called from session-end. Budget: <500ms.
- * Processes pending insights, rebuilds edges, recomputes PageRank.
- */
-function consolidate() {
-  ensureDataDir();
-
-  let store = readJSON(STORE_PATH);
-  if (!store || !Array.isArray(store)) {
-    return { entries: 0, edges: 0, newEntries: 0, message: 'No store to consolidate' };
-  }
-
-  // Deduplicate store entries by ID before processing (fixes #1518)
-  const preDedupCount = store.length;
-  store = deduplicateById(store);
-  // #2628: imports assign fresh IDs to repeated MEMORY.md content, so ID
-  // dedup alone never shrinks the store. Consolidate is the session-end path:
-  // content-dedup here before edge construction and persist the compacted
-  // store so subsequent sessions stay bounded.
-  store = deduplicateByContent(store);
-
-  // 1. Process pending insights
-  let newEntries = 0;
-  if (fs.existsSync(PENDING_PATH)) {
-    const lines = fs.readFileSync(PENDING_PATH, 'utf-8').trim().split('\n').filter(Boolean);
-    const editCounts = {};
-    for (const line of lines) {
-      try {
-        const insight = JSON.parse(line);
-        if (insight.file) {
-          editCounts[insight.file] = (editCounts[insight.file] || 0) + 1;
-        }
-      } catch { /* skip malformed */ }
-    }
-
-    // Create entries for frequently-edited files (3+ edits)
-    for (const [file, count] of Object.entries(editCounts)) {
-      if (count >= 3) {
-        const exists = store.some(e =>
-          (e.metadata && e.metadata.sourceFile === file && e.metadata.autoGenerated)
-        );
-        if (!exists) {
-          store.push({
-            id: `insight-${Date.now()}-${Math.random().toString(36).slice(2, 6)}`,
-            key: `frequent-edit-${path.basename(file)}`,
-            content: `File ${file} was edited ${count} times this session — likely a hot path worth monitoring.`,
-            summary: `Frequently edited: ${path.basename(file)} (${count}x)`,
-            namespace: 'insights',
-            type: 'procedural',
-            metadata: { sourceFile: file, editCount: count, autoGenerated: true },
-            createdAt: Date.now(),
-          });
-          newEntries++;
-        }
-      }
-    }
-
-    // Clear pending
-    fs.writeFileSync(PENDING_PATH, '', 'utf-8');
-  }
-
-  // 2. Confidence decay for unaccessed entries
-  const graph = readJSON(GRAPH_PATH);
-  if (graph && graph.nodes) {
-    const now = Date.now();
-    for (const id of Object.keys(graph.nodes)) {
-      const node = graph.nodes[id];
-      const hoursSinceCreation = (now - (node.createdAt || now)) / (1000 * 60 * 60);
-      if (node.accessCount === 0 && hoursSinceCreation > 24) {
-        node.confidence = Math.max(0.05, (node.confidence || 0.5) - 0.005 * Math.floor(hoursSinceCreation / 24));
-      }
-    }
-  }
-
-  // 3. Rebuild edges with updated store
-  for (const entry of store) {
-    if (!entry.id) entry.id = `entry-${Math.random().toString(36).slice(2, 8)}`;
-  }
-  const edges = buildEdges(store);
-
-  // 4. Build updated nodes
-  const nodes = {};
-  for (const entry of store) {
-    nodes[entry.id] = {
-      id: entry.id,
-      category: entry.namespace || entry.type || 'default',
-      confidence: (graph && graph.nodes && graph.nodes[entry.id])
-        ? graph.nodes[entry.id].confidence
-        : (entry.metadata && entry.metadata.confidence) || 0.5,
-      accessCount: (graph && graph.nodes && graph.nodes[entry.id])
-        ? graph.nodes[entry.id].accessCount
-        : (entry.metadata && entry.metadata.accessCount) || 0,
-      createdAt: entry.createdAt || Date.now(),
-    };
-  }
-
-  // 5. Recompute PageRank (skip if graph too large — #1531)
-  const nodeCount = Object.keys(nodes).length;
-  let pageRanks = {};
-  if (nodeCount > MAX_GRAPH_NODES) {
-    process.stderr.write("[INTELLIGENCE] WARN: Graph has " + nodeCount + " nodes (>" + MAX_GRAPH_NODES + "), skipping PageRank in consolidate\n");
-    for (const id of Object.keys(nodes)) pageRanks[id] = 1 / nodeCount;
-  } else {
-    pageRanks = computePageRank(nodes, edges, 0.85, 30);
-  }
-
-  // 6. Write updated graph. #2920 follow-up: include contentFingerprint so
-  // init()'s cache-hit gate (line ~511) doesn't unconditionally miss on the
-  // very next init after a consolidate — without this, nodeCount alone
-  // matched but contentFingerprint was undefined here vs a real hash in
-  // init()'s own write, forcing a full rebuild every time.
-  writeJSON(GRAPH_PATH, {
-    version: 1,
-    updatedAt: Date.now(),
-    nodeCount: Object.keys(nodes).length,
-    contentFingerprint: storeFingerprint(store),
-    nodes,
-    edges,
-    pageRanks,
-  });
-
-  // 7. Write updated ranked context
-  const rankedEntries = store.map(entry => {
-    const id = entry.id;
-    const content = entry.content || entry.value || '';
-    const summary = entry.summary || entry.key || '';
-    const words = tokenize(content + ' ' + summary);
-    return {
-      id,
-      content,
-      summary,
-      category: entry.namespace || entry.type || 'default',
-      confidence: nodes[id] ? nodes[id].confidence : 0.5,
-      pageRank: pageRanks[id] || 0,
-      accessCount: nodes[id] ? nodes[id].accessCount : 0,
-      words,
-    };
-  }).sort((a, b) => {
-    const scoreA = 0.6 * a.pageRank + 0.4 * a.confidence;
-    const scoreB = 0.6 * b.pageRank + 0.4 * b.confidence;
-    return scoreB - scoreA;
-  });
-
-  writeJSON(RANKED_PATH, {
-    version: 1,
-    computedAt: Date.now(),
-    entries: rankedEntries,
-  });
-
-  // 8. Persist updated store. #2920: this used to skip the write whenever
-  // dedup didn't shrink the array and no insight entries were added — but
-  // that's blind to a same-ID content edit (entry count and ID set both
-  // stay the same, only a field value changes), so an in-memory content
-  // update could be silently dropped instead of persisted. GRAPH_PATH and
-  // RANKED_PATH are rewritten unconditionally just above; writing the
-  // (already deduped, size-bounded per ADR-095 G6) store alongside them
-  // costs nothing near the <500ms budget and removes the whole bug class.
-  writeJSON(STORE_PATH, store);
-
-  // 9. Save snapshot for delta tracking
-  const updatedGraph = readJSON(GRAPH_PATH);
-  const updatedRanked = readJSON(RANKED_PATH);
-  saveSnapshot(updatedGraph, updatedRanked);
-
-  return {
-    entries: store.length,
-    edges: edges.length,
-    newEntries,
-    message: 'Consolidated',
-  };
-}
-
-// ── Snapshot for delta tracking ─────────────────────────────────────────────
-
-const SNAPSHOT_PATH = path.join(DATA_DIR, 'intelligence-snapshot.json');
-
-function saveSnapshot(graph, ranked) {
-  const snap = {
-    timestamp: Date.now(),
-    nodes: graph ? Object.keys(graph.nodes || {}).length : 0,
-    edges: graph ? (graph.edges || []).length : 0,
-    pageRankSum: 0,
-    confidences: [],
-    accessCounts: [],
-    topPatterns: [],
-  };
-
-  if (graph && graph.pageRanks) {
-    for (const v of Object.values(graph.pageRanks)) snap.pageRankSum += v;
-  }
-  if (graph && graph.nodes) {
-    for (const n of Object.values(graph.nodes)) {
-      snap.confidences.push(n.confidence || 0.5);
-      snap.accessCounts.push(n.accessCount || 0);
-    }
-  }
-  if (ranked && ranked.entries) {
-    snap.topPatterns = ranked.entries.slice(0, 10).map(e => ({
-      id: e.id,
-      summary: (e.summary || '').slice(0, 60),
-      confidence: e.confidence || 0.5,
-      pageRank: e.pageRank || 0,
-      accessCount: e.accessCount || 0,
-    }));
-  }
-
-  // Keep history: append to array, cap at 50
-  let history = readJSON(SNAPSHOT_PATH);
-  if (!Array.isArray(history)) history = [];
-  history.push(snap);
-  if (history.length > 50) history = history.slice(-50);
-  writeJSON(SNAPSHOT_PATH, history);
-}
-
-/**
- * stats() — Diagnostic report showing intelligence health and improvement.
- * Can be called as: node intelligence.cjs stats [--json]
- */
-function stats(outputJson) {
-  const graph = readJSON(GRAPH_PATH);
-  const ranked = readJSON(RANKED_PATH);
-  const history = readJSON(SNAPSHOT_PATH) || [];
-  const pending = fs.existsSync(PENDING_PATH)
-    ? fs.readFileSync(PENDING_PATH, 'utf-8').trim().split('\n').filter(Boolean).length
-    : 0;
-
-  // Current state
-  const nodes = graph ? Object.keys(graph.nodes || {}).length : 0;
-  const edges = graph ? (graph.edges || []).length : 0;
-  const density = nodes > 1 ? (2 * edges) / (nodes * (nodes - 1)) : 0;
-
-  // Confidence distribution
-  const confidences = [];
-  const accessCounts = [];
-  if (graph && graph.nodes) {
-    for (const n of Object.values(graph.nodes)) {
-      confidences.push(n.confidence || 0.5);
-      accessCounts.push(n.accessCount || 0);
-    }
-  }
-  confidences.sort((a, b) => a - b);
-  const confMin = confidences.length ? confidences[0] : 0;
-  const confMax = confidences.length ? confidences[confidences.length - 1] : 0;
-  const confMean = confidences.length ? confidences.reduce((s, c) => s + c, 0) / confidences.length : 0;
-  const confMedian = confidences.length ? confidences[Math.floor(confidences.length / 2)] : 0;
-
-  // Access stats
-  const totalAccess = accessCounts.reduce((s, c) => s + c, 0);
-  const accessedCount = accessCounts.filter(c => c > 0).length;
-
-  // PageRank stats
-  let prSum = 0, prMax = 0, prMaxId = '';
-  if (graph && graph.pageRanks) {
-    for (const [id, pr] of Object.entries(graph.pageRanks)) {
-      prSum += pr;
-      if (pr > prMax) { prMax = pr; prMaxId = id; }
-    }
-  }
-
-  // Top patterns by composite score
-  const topPatterns = (ranked && ranked.entries || []).slice(0, 10).map((e, i) => ({
-    rank: i + 1,
-    summary: (e.summary || '').slice(0, 60),
-    confidence: (e.confidence || 0.5).toFixed(3),
-    pageRank: (e.pageRank || 0).toFixed(4),
-    accessed: e.accessCount || 0,
-    score: (0.6 * (e.pageRank || 0) + 0.4 * (e.confidence || 0.5)).toFixed(4),
-  }));
-
-  // Edge type breakdown
-  const edgeTypes = {};
-  if (graph && graph.edges) {
-    for (const e of graph.edges) {
-      edgeTypes[e.type || 'unknown'] = (edgeTypes[e.type || 'unknown'] || 0) + 1;
-    }
-  }
-
-  // Delta from previous snapshot
-  let delta = null;
-  if (history.length >= 2) {
-    const prev = history[history.length - 2];
-    const curr = history[history.length - 1];
-    const elapsed = (curr.timestamp - prev.timestamp) / 1000;
-    const prevConfMean = prev.confidences.length
-      ? prev.confidences.reduce((s, c) => s + c, 0) / prev.confidences.length : 0;
-    const currConfMean = curr.confidences.length
-      ? curr.confidences.reduce((s, c) => s + c, 0) / curr.confidences.length : 0;
-    const prevAccess = prev.accessCounts.reduce((s, c) => s + c, 0);
-    const currAccess = curr.accessCounts.reduce((s, c) => s + c, 0);
-
-    delta = {
-      elapsed: elapsed < 3600 ? `${Math.round(elapsed / 60)}m` : `${(elapsed / 3600).toFixed(1)}h`,
-      nodes: curr.nodes - prev.nodes,
-      edges: curr.edges - prev.edges,
-      confidenceMean: currConfMean - prevConfMean,
-      totalAccess: currAccess - prevAccess,
-    };
-  }
-
-  // Trend over all history
-  let trend = null;
-  if (history.length >= 3) {
-    const first = history[0];
-    const last = history[history.length - 1];
-    const sessions = history.length;
-    const firstConfMean = first.confidences.length
-      ? first.confidences.reduce((s, c) => s + c, 0) / first.confidences.length : 0;
-    const lastConfMean = last.confidences.length
-      ? last.confidences.reduce((s, c) => s + c, 0) / last.confidences.length : 0;
-    trend = {
-      sessions,
-      nodeGrowth: last.nodes - first.nodes,
-      edgeGrowth: last.edges - first.edges,
-      confidenceDrift: lastConfMean - firstConfMean,
-      direction: lastConfMean > firstConfMean ? 'improving' :
-                 lastConfMean < firstConfMean ? 'declining' : 'stable',
-    };
-  }
-
-  const report = {
-    graph: { nodes, edges, density: +density.toFixed(4) },
-    confidence: {
-      min: +confMin.toFixed(3), max: +confMax.toFixed(3),
-      mean: +confMean.toFixed(3), median: +confMedian.toFixed(3),
-    },
-    access: { total: totalAccess, patternsAccessed: accessedCount, patternsNeverAccessed: nodes - accessedCount },
-    pageRank: { sum: +prSum.toFixed(4), topNode: prMaxId, topNodeRank: +prMax.toFixed(4) },
-    edgeTypes,
-    pendingInsights: pending,
-    snapshots: history.length,
-    topPatterns,
-    delta,
-    trend,
-  };
-
-  if (outputJson) {
-    console.log(JSON.stringify(report, null, 2));
-    return report;
-  }
-
-  // Human-readable output
-  const bar = '+' + '-'.repeat(62) + '+';
-  console.log(bar);
-  console.log('|' + '  Intelligence Diagnostics (ADR-050)'.padEnd(62) + '|');
-  console.log(bar);
-  console.log('');
-
-  console.log('  Graph');
-  console.log(`    Nodes:    ${nodes}`);
-  console.log(`    Edges:    ${edges} (${Object.entries(edgeTypes).map(([t,c]) => `${c} ${t}`).join(', ') || 'none'})`);
-  console.log(`    Density:  ${(density * 100).toFixed(1)}%`);
-  console.log('');
-
-  console.log('  Confidence');
-  console.log(`    Min:      ${confMin.toFixed(3)}`);
-  console.log(`    Max:      ${confMax.toFixed(3)}`);
-  console.log(`    Mean:     ${confMean.toFixed(3)}`);
-  console.log(`    Median:   ${confMedian.toFixed(3)}`);
-  console.log('');
-
-  console.log('  Access');
-  console.log(`    Total accesses:     ${totalAccess}`);
-  console.log(`    Patterns used:      ${accessedCount}/${nodes}`);
-  console.log(`    Never accessed:     ${nodes - accessedCount}`);
-  console.log(`    Pending insights:   ${pending}`);
-  console.log('');
-
-  console.log('  PageRank');
-  console.log(`    Sum:      ${prSum.toFixed(4)} (should be ~1.0)`);
-  console.log(`    Top node: ${prMaxId || '(none)'} (${prMax.toFixed(4)})`);
-  console.log('');
-
-  if (topPatterns.length > 0) {
-    console.log('  Top Patterns (by composite score)');
-    console.log('  ' + '-'.repeat(60));
-    for (const p of topPatterns) {
-      console.log(`    #${p.rank}  ${p.summary}`);
-      console.log(`         conf=${p.confidence}  pr=${p.pageRank}  score=${p.score}  accessed=${p.accessed}x`);
-    }
-    console.log('');
-  }
-
-  if (delta) {
-    console.log(`  Last Delta (${delta.elapsed} ago)`);
-    const sign = v => v > 0 ? `+${v}` : `${v}`;
-    console.log(`    Nodes:      ${sign(delta.nodes)}`);
-    console.log(`    Edges:      ${sign(delta.edges)}`);
-    console.log(`    Confidence: ${delta.confidenceMean >= 0 ? '+' : ''}${delta.confidenceMean.toFixed(4)}`);
-    console.log(`    Accesses:   ${sign(delta.totalAccess)}`);
-    console.log('');
-  }
-
-  if (trend) {
-    console.log(`  Trend (${trend.sessions} snapshots)`);
-    console.log(`    Node growth:       ${trend.nodeGrowth >= 0 ? '+' : ''}${trend.nodeGrowth}`);
-    console.log(`    Edge growth:       ${trend.edgeGrowth >= 0 ? '+' : ''}${trend.edgeGrowth}`);
-    console.log(`    Confidence drift:  ${trend.confidenceDrift >= 0 ? '+' : ''}${trend.confidenceDrift.toFixed(4)}`);
-    console.log(`    Direction:         ${trend.direction.toUpperCase()}`);
-    console.log('');
-  }
-
-  if (!delta && !trend) {
-    console.log('  No history yet — run more sessions to see deltas and trends.');
-    console.log('');
-  }
-
-  console.log(bar);
-  return report;
-}
-
-module.exports = {
-  init,
-  getContext,
-  recordEdit,
-  feedback,
-  consolidate,
-  stats,
-  resolveProjectRoot,
-  projectRoot: PROJECT_ROOT,
-};
-
-// ── CLI entrypoint ──────────────────────────────────────────────────────────
-if (require.main === module) {
-  const cmd = process.argv[2];
-  const jsonFlag = process.argv.includes('--json');
-
-  const cmds = {
-    init: () => { const r = init(); console.log(JSON.stringify(r)); },
-    stats: () => { stats(jsonFlag); },
-    consolidate: () => { const r = consolidate(); console.log(JSON.stringify(r)); },
-  };
-
-  if (cmd && cmds[cmd]) {
-    cmds[cmd]();
-  } else {
-    console.log('Usage: intelligence.cjs <stats|init|consolidate> [--json]');
-    console.log('');
-    console.log('  stats         Show intelligence diagnostics and trends');
-    console.log('  stats --json  Output as JSON for programmatic use');
-    console.log('  init          Build graph and rank entries');
-    console.log('  consolidate   Process pending insights and recompute');
-  }
-}
+#!/usr/bin/env node
+/**
+ * Intelligence Layer (ADR-050)
+ *
+ * Closes the intelligence loop by wiring PageRank-ranked memory into
+ * the hook system. Pure CJS — no ESM imports of @claude-flow/memory.
+ *
+ * Data files (all under .claude-flow/data/):
+ *   auto-memory-store.json  — written by auto-memory-hook.mjs
+ *   graph-state.json        — serialized graph (nodes + edges + pageRanks)
+ *   ranked-context.json     — pre-computed ranked entries for fast lookup
+ *   pending-insights.jsonl  — append-only edit/task log
+ */
+
+'use strict';
+
+const fs = require('fs');
+const path = require('path');
+
+function resolveProjectRoot(startDir) {
+  if (process.env.CLAUDE_PROJECT_DIR) {
+    return path.resolve(process.env.CLAUDE_PROJECT_DIR);
+  }
+  let dir = path.resolve(startDir || process.cwd());
+  while (true) {
+    if (fs.existsSync(path.join(dir, '.git')) ||
+        fs.existsSync(path.join(dir, '.claude-flow'))) {
+      return dir;
+    }
+    const parent = path.dirname(dir);
+    if (parent === dir) return path.resolve(startDir || process.cwd());
+    dir = parent;
+  }
+}
+
+const PROJECT_ROOT = resolveProjectRoot(process.cwd());
+const DATA_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'data');
+const STORE_PATH = path.join(DATA_DIR, 'auto-memory-store.json');
+const GRAPH_PATH = path.join(DATA_DIR, 'graph-state.json');
+const RANKED_PATH = path.join(DATA_DIR, 'ranked-context.json');
+const PENDING_PATH = path.join(DATA_DIR, 'pending-insights.jsonl');
+const LEGACY_PENDING_PATH = path.join(process.cwd(), '.claude-flow', 'data', 'pending-insights.jsonl');
+const SESSION_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'sessions');
+const SESSION_FILE = path.join(SESSION_DIR, 'current.json');
+
+// ── Safety limits (fixes #1530, #1531) ─────────────────────────────────────
+const MAX_DATA_FILE_SIZE = 10 * 1024 * 1024; // 10 MB — skip files larger than this
+const MAX_GRAPH_NODES = 5000;                 // skip PageRank if graph exceeds this
+// #2628: similarity edges used to compare every pair in every category.
+// Keep exact graph behavior for normal stores, but never let a session-end
+// hook enter an unbounded O(n²) pass. Temporal edges remain linear and are
+// always retained when the similarity pass is skipped.
+const MAX_SIMILARITY_COMPARISONS = 100000;
+
+// ── Stop words for trigram matching ──────────────────────────────────────────
+
+const STOP_WORDS = new Set([
+  'the', 'a', 'an', 'is', 'are', 'was', 'were', 'be', 'been', 'being',
+  'have', 'has', 'had', 'do', 'does', 'did', 'will', 'would', 'could',
+  'should', 'may', 'might', 'shall', 'can', 'to', 'of', 'in', 'for',
+  'on', 'with', 'at', 'by', 'from', 'as', 'into', 'through', 'during',
+  'before', 'after', 'and', 'but', 'or', 'nor', 'not', 'so', 'yet',
+  'both', 'either', 'neither', 'each', 'every', 'all', 'any', 'few',
+  'more', 'most', 'other', 'some', 'such', 'no', 'only', 'own', 'same',
+  'than', 'too', 'very', 'just', 'because', 'if', 'when', 'which',
+  'who', 'whom', 'this', 'that', 'these', 'those', 'it', 'its',
+]);
+
+// ── Helpers ──────────────────────────────────────────────────────────────────
+
+function ensureDataDir() {
+  if (!fs.existsSync(DATA_DIR)) fs.mkdirSync(DATA_DIR, { recursive: true });
+  // Recover signal written by older helpers under a subdirectory cwd. Keep
+  // the legacy file intact and append only lines not already present.
+  if (path.resolve(LEGACY_PENDING_PATH) !== path.resolve(PENDING_PATH) &&
+      fs.existsSync(LEGACY_PENDING_PATH)) {
+    try {
+      const existing = fs.existsSync(PENDING_PATH)
+        ? new Set(fs.readFileSync(PENDING_PATH, 'utf-8').split('\n').filter(Boolean))
+        : new Set();
+      const recovered = fs.readFileSync(LEGACY_PENDING_PATH, 'utf-8')
+        .split('\n')
+        .filter(line => line && !existing.has(line));
+      if (recovered.length > 0) {
+        fs.appendFileSync(PENDING_PATH, recovered.join('\n') + '\n', 'utf-8');
+      }
+    } catch { /* migration is best-effort; never block hook execution */ }
+  }
+}
+
+function readJSON(filePath) {
+  // Safety: skip files exceeding MAX_DATA_FILE_SIZE (#1531)
+  try {
+    const stat = fs.statSync(filePath);
+    if (stat.size > MAX_DATA_FILE_SIZE) {
+      process.stderr.write("[INTELLIGENCE] WARN: Skipping " + path.basename(filePath) + " (" + Math.round(stat.size / 1048576) + "MB exceeds 10MB limit)\n");
+      return null;
+    }
+  } catch { /* file may not exist yet */ }
+  try {
+    if (fs.existsSync(filePath)) return JSON.parse(fs.readFileSync(filePath, 'utf-8'));
+  } catch { /* corrupt file — start fresh */ }
+  return null;
+}
+
+function writeJSON(filePath, data) {
+  ensureDataDir();
+  fs.writeFileSync(filePath, JSON.stringify(data, null, 2), 'utf-8');
+}
+
+function tokenize(text) {
+  if (!text) return [];
+  return text.toLowerCase()
+    .replace(/[^a-z0-9\s-]/g, ' ')
+    .split(/\s+/)
+    .filter(w => w.length > 2 && !STOP_WORDS.has(w));
+}
+
+function trigrams(words) {
+  const t = new Set();
+  for (const w of words) {
+    for (let i = 0; i <= w.length - 3; i++) t.add(w.slice(i, i + 3));
+  }
+  return t;
+}
+
+function jaccardSimilarity(setA, setB) {
+  if (setA.size === 0 && setB.size === 0) return 0;
+  let intersection = 0;
+  for (const item of setA) { if (setB.has(item)) intersection++; }
+  return intersection / (setA.size + setB.size - intersection);
+}
+
+// ── Deduplication helper (fixes #1518) ──────────────────────────────────────
+
+function deduplicateById(entries) {
+  if (!entries || !Array.isArray(entries)) return entries;
+  const seen = new Map();
+  for (const entry of entries) {
+    const id = entry.id || entry.key;
+    if (id) {
+      seen.set(id, entry);
+    } else {
+      seen.set(`__no_id_${seen.size}`, entry);
+    }
+  }
+  return Array.from(seen.values());
+}
+
+// ADR-095 G6 — content-hash dedup. The April audit measured 5,706 entries
+// in the auto-memory store with only ~20 unique by content; 5,686 dupes
+// were the same MEMORY.md sections imported from sibling project dirs
+// with different IDs. deduplicateById can't catch these (the IDs really
+// are different); we need a content fingerprint.
+//
+// Fast non-cryptographic fingerprint — collisions on 64-bit FNV-1a are
+// vanishingly rare for human prose at the scale of an auto-memory store.
+// Whitespace-normalized so trivially-different formatting doesn't bypass dedup.
+function fingerprintContent(text) {
+  if (typeof text !== 'string' || text.length === 0) return '0';
+  const norm = text.replace(/\s+/g, ' ').trim().toLowerCase();
+  // FNV-1a 64-bit (split into 32-bit halves to stay within Number safe int)
+  let h1 = 0x811c9dc5, h2 = 0xcbf29ce4;
+  for (let i = 0; i < norm.length; i++) {
+    const c = norm.charCodeAt(i);
+    h1 ^= c; h1 = Math.imul(h1, 0x01000193) >>> 0;
+    h2 ^= c; h2 = Math.imul(h2, 0x100000001b3 & 0xffffffff) >>> 0;
+  }
+  return `${h1.toString(16)}_${h2.toString(16)}_${norm.length}`;
+}
+
+// #2920 — aggregate content fingerprint for a whole store, used to detect
+// same-ID content edits (e.g. hand-editing a MEMORY.md section's body while
+// its heading/key, and therefore its generated ID, stays the same). Neither
+// entry count nor ID set changes on a same-ID edit, so any staleness check
+// based only on those two signals misses it; this folds each entry's own
+// content fingerprint into one combined value that does change.
+function storeFingerprint(entries) {
+  if (!entries || !entries.length) return '0';
+  const parts = entries
+    .map((e) => `${e.id || e.key || ''}:${fingerprintContent(e.content || e.summary || e.value || '')}`)
+    .sort();
+  return fingerprintContent(parts.join('|'));
+}
+
+function deduplicateByContent(entries) {
+  if (!entries || !Array.isArray(entries)) return entries;
+  const seen = new Map();
+  for (const entry of entries) {
+    const content = entry.content || entry.summary || entry.value || '';
+    const normalizedContent = typeof content === 'string' ? content : JSON.stringify(content);
+    // Content-less records can still represent distinct graph nodes. There is
+    // no content identity to prove they are duplicates, so preserve them.
+    if (!normalizedContent || !normalizedContent.trim()) {
+      seen.set(`__no_content_${seen.size}`, entry);
+      continue;
+    }
+    const fp = fingerprintContent(normalizedContent);
+    if (!seen.has(fp)) {
+      seen.set(fp, entry);
+    } else {
+      // Keep the entry with the higher accessCount or earlier createdAt
+      const existing = seen.get(fp);
+      const existingAccess = existing.accessCount || 0;
+      const candidateAccess = entry.accessCount || 0;
+      if (candidateAccess > existingAccess) seen.set(fp, entry);
+    }
+  }
+  return Array.from(seen.values());
+}
+
+// ── Session state helpers ────────────────────────────────────────────────────
+
+function sessionGet(key) {
+  try {
+    if (!fs.existsSync(SESSION_FILE)) return null;
+    const session = JSON.parse(fs.readFileSync(SESSION_FILE, 'utf-8'));
+    return key ? (session.context || {})[key] : session.context;
+  } catch { return null; }
+}
+
+function sessionSet(key, value) {
+  try {
+    if (!fs.existsSync(SESSION_DIR)) fs.mkdirSync(SESSION_DIR, { recursive: true });
+    let session = {};
+    if (fs.existsSync(SESSION_FILE)) {
+      session = JSON.parse(fs.readFileSync(SESSION_FILE, 'utf-8'));
+    }
+    if (!session.context) session.context = {};
+    session.context[key] = value;
+    session.updatedAt = new Date().toISOString();
+    fs.writeFileSync(SESSION_FILE, JSON.stringify(session, null, 2), 'utf-8');
+  } catch { /* best effort */ }
+}
+
+// ── PageRank ─────────────────────────────────────────────────────────────────
+
+function computePageRank(nodes, edges, damping, maxIter) {
+  damping = damping || 0.85;
+  maxIter = maxIter || 30;
+
+  const ids = Object.keys(nodes);
+  const n = ids.length;
+  if (n === 0) return {};
+
+  // Build adjacency: outgoing edges per node
+  const outLinks = {};
+  const inLinks = {};
+  for (const id of ids) { outLinks[id] = []; inLinks[id] = []; }
+  for (const edge of edges) {
+    if (outLinks[edge.sourceId]) outLinks[edge.sourceId].push(edge.targetId);
+    if (inLinks[edge.targetId]) inLinks[edge.targetId].push(edge.sourceId);
+  }
+
+  // Initialize ranks
+  const ranks = {};
+  for (const id of ids) ranks[id] = 1 / n;
+
+  // Power iteration (with dangling node redistribution)
+  for (let iter = 0; iter < maxIter; iter++) {
+    const newRanks = {};
+    let diff = 0;
+
+    // Collect rank from dangling nodes (no outgoing edges)
+    let danglingSum = 0;
+    for (const id of ids) {
+      if (outLinks[id].length === 0) danglingSum += ranks[id];
+    }
+
+    for (const id of ids) {
+      let sum = 0;
+      for (const src of inLinks[id]) {
+        const outCount = outLinks[src].length;
+        if (outCount > 0) sum += ranks[src] / outCount;
+      }
+      // Dangling rank distributed evenly + teleport
+      newRanks[id] = (1 - damping) / n + damping * (sum + danglingSum / n);
+      diff += Math.abs(newRanks[id] - ranks[id]);
+    }
+
+    for (const id of ids) ranks[id] = newRanks[id];
+    if (diff < 1e-6) break; // converged
+  }
+
+  return ranks;
+}
+
+// ── Edge building ────────────────────────────────────────────────────────────
+
+function buildEdges(entries) {
+  const edges = [];
+  const byCategory = {};
+
+  for (const entry of entries) {
+    const cat = entry.category || entry.namespace || 'default';
+    if (!byCategory[cat]) byCategory[cat] = [];
+    byCategory[cat].push(entry);
+  }
+
+  // Temporal edges: entries from same sourceFile
+  const byFile = {};
+  for (const entry of entries) {
+    const file = (entry.metadata && entry.metadata.sourceFile) || null;
+    if (file) {
+      if (!byFile[file]) byFile[file] = [];
+      byFile[file].push(entry);
+    }
+  }
+  for (const file of Object.keys(byFile)) {
+    const group = byFile[file];
+    for (let i = 0; i < group.length - 1; i++) {
+      edges.push({
+        sourceId: group[i].id,
+        targetId: group[i + 1].id,
+        type: 'temporal',
+        weight: 0.5,
+      });
+    }
+  }
+
+  let similarityComparisons = 0;
+  for (const group of Object.values(byCategory)) {
+    similarityComparisons += (group.length * (group.length - 1)) / 2;
+    if (similarityComparisons > MAX_SIMILARITY_COMPARISONS) break;
+  }
+
+  // Similarity edges within categories (Jaccard > 0.3).
+  // ADR-095 G6 perf: hoist the trigram computation outside the inner
+  // loop. Previously we re-tokenized + re-trigrammed group[j] for every
+  // i — O(n²) extra work for nothing. Now compute once per entry.
+  // #2628: the old unconditional nested loop blocked session exit for tens
+  // of seconds on accumulated stores. Skip only the quadratic similarity
+  // layer when its deterministic pair count exceeds the budget; the linear
+  // temporal graph above is still complete.
+  if (similarityComparisons > MAX_SIMILARITY_COMPARISONS) {
+    process.stderr.write(
+      `[INTELLIGENCE] WARN: Similarity graph needs >${MAX_SIMILARITY_COMPARISONS} comparisons; ` +
+      'skipping similarity edges (temporal edges retained)\n'
+    );
+    return edges;
+  }
+
+  for (const cat of Object.keys(byCategory)) {
+    const group = byCategory[cat];
+    if (group.length < 2) continue;
+
+    // Cache trigram sets for every entry in the group.
+    const triCache = new Array(group.length);
+    for (let i = 0; i < group.length; i++) {
+      triCache[i] = trigrams(tokenize(group[i].content || group[i].summary || ''));
+    }
+
+    for (let i = 0; i < group.length; i++) {
+      const triA = triCache[i];
+      for (let j = i + 1; j < group.length; j++) {
+        const sim = jaccardSimilarity(triA, triCache[j]);
+        if (sim > 0.3) {
+          edges.push({
+            sourceId: group[i].id,
+            targetId: group[j].id,
+            type: 'similar',
+            weight: sim,
+          });
+        }
+      }
+    }
+  }
+
+  return edges;
+}
+
+// ── Bootstrap from MEMORY.md files ───────────────────────────────────────────
+
+/**
+ * If auto-memory-store.json is empty, bootstrap by parsing MEMORY.md and
+ * topic files from the auto-memory directory. This removes the dependency
+ * on @claude-flow/memory for the initial seed.
+ */
+function bootstrapFromMemoryFiles() {
+  const entries = [];
+  const cwd = PROJECT_ROOT;
+
+  // Search for auto-memory directories
+  const candidates = [
+    // Claude Code auto-memory (project-scoped)
+    path.join(require('os').homedir(), '.claude', 'projects'),
+    // Local project memory
+    path.join(cwd, '.claude-flow', 'memory'),
+    path.join(cwd, '.claude', 'memory'),
+  ];
+
+  // Find MEMORY.md in project-scoped dirs
+  for (const base of candidates) {
+    if (!fs.existsSync(base)) continue;
+
+    // For the projects dir, scope to CURRENT project only (not all 51+ dirs)
+    if (base.endsWith('projects')) {
+      try {
+        // Match Claude Code's project-dir slug: every non-alphanumeric char -> '-'
+        // (e.g. "G:\\My Drive\\TJ_Vault" -> "G--My-Drive-TJ-Vault"). The old version
+        // only handled POSIX '/', so on Windows the slug kept ':' and '\\' and never
+        // matched the real <projects>/<slug>/memory dir — bootstrap found nothing (FIX 5).
+        const projectSlug = cwd.replace(/[^a-zA-Z0-9]/g, '-');
+        const memDir = path.join(base, projectSlug, 'memory');
+        if (fs.existsSync(memDir)) {
+          parseMemoryDir(memDir, entries);
+        }
+      } catch { /* skip */ }
+    } else if (fs.existsSync(base)) {
+      parseMemoryDir(base, entries);
+    }
+  }
+
+  return entries;
+}
+
+// Truncation transparency (FIX 4): mark the cut with an ellipsis and warn under
+// debug, so later reasoning isn't silently built on severed text.
+const CLIP_DEBUG = !!(process.env.RUFLO_DEBUG || process.env.DEBUG);
+function clip(text, max, label) {
+  text = text == null ? '' : String(text);
+  if (text.length <= max) return text;
+  if (CLIP_DEBUG) process.stderr.write(`[INTELLIGENCE] WARN: truncated ${label || 'value'} from ${text.length} to ${max} chars\n`);
+  return text.slice(0, max - 1) + '…';
+}
+
+function parseMemoryDir(dir, entries) {
+  try {
+    const files = fs.readdirSync(dir).filter(f => f.endsWith('.md'));
+    for (const file of files) {
+      const filePath = path.join(dir, file);
+      const content = fs.readFileSync(filePath, 'utf-8');
+      if (!content.trim()) continue;
+
+      // Parse markdown sections as separate entries
+      const sections = content.split(/^##?\s+/m).filter(Boolean);
+      for (let sIdx = 0; sIdx < sections.length; sIdx++) {
+        const section = sections[sIdx];
+        const lines = section.trim().split('\n');
+        const title = lines[0].trim();
+        const body = lines.slice(1).join('\n').trim();
+        if (!body || body.length < 10) continue;
+
+        const id = `mem-${file.replace('.md', '')}-${title.replace(/[^a-z0-9]/gi, '-').toLowerCase().slice(0, 30)}-${sIdx}`;
+        entries.push({
+          id,
+          key: title.toLowerCase().replace(/[^a-z0-9]+/g, '-').slice(0, 50),
+          content: clip(body, 500, 'memory content'),
+          summary: title,
+          namespace: file === 'MEMORY.md' ? 'core' : file.replace('.md', ''),
+          type: 'semantic',
+          metadata: { sourceFile: filePath, bootstrapped: true },
+          createdAt: Date.now(),
+        });
+      }
+    }
+  } catch { /* skip unreadable dirs */ }
+}
+
+// ── Exported functions ───────────────────────────────────────────────────────
+
+/**
+ * init() — Called from session-restore. Budget: <200ms.
+ * Reads auto-memory-store.json, builds graph, computes PageRank, writes caches.
+ * If store is empty, bootstraps from MEMORY.md files directly.
+ */
+function init() {
+  ensureDataDir();
+
+  // Check if graph-state.json is fresh (within 60s of store)
+  const graphState = readJSON(GRAPH_PATH);
+  let store = readJSON(STORE_PATH);
+
+  // Bootstrap from MEMORY.md files if store is empty
+  if (!store || !Array.isArray(store) || store.length === 0) {
+    const bootstrapped = bootstrapFromMemoryFiles();
+    if (bootstrapped.length > 0) {
+      store = bootstrapped;
+      writeJSON(STORE_PATH, store);
+    } else {
+      return { nodes: 0, edges: 0, message: 'No memory entries to index' };
+    }
+  }
+
+  // Deduplicate store entries by ID (fixes #1518 — 194MB → ~79KB)
+  let deduped = deduplicateById(store);
+  // ADR-095 G6: also dedupe by content fingerprint. The April audit
+  // measured 5,706 entries with only ~20 unique by content because the
+  // same MEMORY.md sections get imported from sibling project dirs with
+  // different IDs. deduplicateById can't catch that; deduplicateByContent
+  // can. Cuts the graph from O(n²) over near-identical duplicates down
+  // to O(unique²), which is the difference between a 100MB graph-state
+  // and a kilobytes-scale one for typical workloads.
+  const beforeContentDedup = deduped.length;
+  deduped = deduplicateByContent(deduped);
+  if (deduped.length < store.length) {
+    process.stderr.write(
+      `[INTELLIGENCE] Deduped store: ${store.length} -> ${deduped.length} entries ` +
+      `(by-id: ${store.length - beforeContentDedup} dropped, by-content: ${beforeContentDedup - deduped.length} dropped)\n`
+    );
+    writeJSON(STORE_PATH, deduped);
+  }
+
+  // Skip rebuild if graph is fresh and store hasn't changed. #2920: nodeCount
+  // alone doesn't detect a same-ID content edit (e.g. hand-editing a
+  // MEMORY.md section's body while its heading/key stays the same) — the
+  // count and ID set are unchanged, so a count-only check returns a stale
+  // cache hit and never refreshes ranked-context.json. Require the content
+  // fingerprint to match too.
+  const currentFingerprint = storeFingerprint(deduped);
+  if (graphState && graphState.nodeCount === deduped.length && graphState.contentFingerprint === currentFingerprint) {
+    const age = Date.now() - (graphState.updatedAt || 0);
+    if (age < 60000) {
+      return {
+        nodes: graphState.nodeCount || Object.keys(graphState.nodes || {}).length,
+        edges: (graphState.edges || []).length,
+        message: 'Graph cache hit',
+      };
+    }
+  }
+
+  // Build nodes from deduped entries
+  const nodes = {};
+  for (const entry of deduped) {
+    const id = entry.id || entry.key || `entry-${Math.random().toString(36).slice(2, 8)}`;
+    nodes[id] = {
+      id,
+      category: entry.namespace || entry.type || 'default',
+      confidence: (entry.metadata && entry.metadata.confidence) || 0.5,
+      accessCount: (entry.metadata && entry.metadata.accessCount) || 0,
+      createdAt: entry.createdAt || Date.now(),
+    };
+    // Ensure entry has id for edge building
+    entry.id = id;
+  }
+
+  // Build edges
+  const edges = buildEdges(deduped);
+
+  // Compute PageRank (skip if graph too large — #1531)
+  const nodeCount = Object.keys(nodes).length;
+  let pageRanks = {};
+  if (nodeCount > MAX_GRAPH_NODES) {
+    process.stderr.write("[INTELLIGENCE] WARN: Graph has " + nodeCount + " nodes (>" + MAX_GRAPH_NODES + "), skipping PageRank\n");
+    for (const id of Object.keys(nodes)) pageRanks[id] = 1 / nodeCount;
+  } else {
+    pageRanks = computePageRank(nodes, edges, 0.85, 30);
+  }
+
+  // Write graph state
+  const graph = {
+    version: 1,
+    updatedAt: Date.now(),
+    nodeCount: Object.keys(nodes).length,
+    contentFingerprint: currentFingerprint,
+    nodes,
+    edges,
+    pageRanks,
+  };
+  writeJSON(GRAPH_PATH, graph);
+
+  // Build ranked context for fast lookup
+  const rankedEntries = deduped.map(entry => {
+    const id = entry.id;
+    const content = entry.content || entry.value || '';
+    const summary = entry.summary || entry.key || '';
+    const words = tokenize(content + ' ' + summary);
+    return {
+      id,
+      content,
+      summary,
+      category: entry.namespace || entry.type || 'default',
+      confidence: nodes[id] ? nodes[id].confidence : 0.5,
+      pageRank: pageRanks[id] || 0,
+      accessCount: nodes[id] ? nodes[id].accessCount : 0,
+      words,
+    };
+  }).sort((a, b) => {
+    const scoreA = 0.6 * a.pageRank + 0.4 * a.confidence;
+    const scoreB = 0.6 * b.pageRank + 0.4 * b.confidence;
+    return scoreB - scoreA;
+  });
+
+  const ranked = {
+    version: 1,
+    computedAt: Date.now(),
+    entries: rankedEntries,
+  };
+  writeJSON(RANKED_PATH, ranked);
+
+  return {
+    nodes: Object.keys(nodes).length,
+    edges: edges.length,
+    message: 'Graph built and ranked',
+  };
+}
+
+/**
+ * getContext(prompt) — Called from route. Budget: <15ms.
+ * Matches prompt to ranked entries, returns top-5 formatted context.
+ */
+function getContext(prompt) {
+  if (!prompt) return null;
+
+  const ranked = readJSON(RANKED_PATH);
+  if (!ranked || !ranked.entries || ranked.entries.length === 0) return null;
+
+  const promptWords = tokenize(prompt);
+  if (promptWords.length === 0) return null;
+  const promptTrigrams = trigrams(promptWords);
+
+  const ALPHA = 0.6; // content match weight
+  const MIN_THRESHOLD = 0.05;
+  const TOP_K = 5;
+
+  // Score each entry
+  const scored = [];
+  for (const entry of ranked.entries) {
+    const entryTrigrams = trigrams(entry.words || []);
+    const contentMatch = jaccardSimilarity(promptTrigrams, entryTrigrams);
+    const score = ALPHA * contentMatch + (1 - ALPHA) * (entry.pageRank || 0);
+    if (score >= MIN_THRESHOLD) {
+      scored.push({ ...entry, score });
+    }
+  }
+
+  if (scored.length === 0) return null;
+
+  // Sort by score descending, take top-K
+  scored.sort((a, b) => b.score - a.score);
+  const topEntries = scored.slice(0, TOP_K);
+
+  // Boost previously matched patterns (implicit success: user continued working)
+  const prevMatched = sessionGet('lastMatchedPatterns');
+
+  // Store NEW matched IDs in session state for feedback
+  const matchedIds = topEntries.map(e => e.id);
+  sessionSet('lastMatchedPatterns', matchedIds);
+
+  // Only boost previous if they differ from current (avoid double-boosting)
+  if (prevMatched && Array.isArray(prevMatched)) {
+    const newSet = new Set(matchedIds);
+    const toBoost = prevMatched.filter(id => !newSet.has(id));
+    if (toBoost.length > 0) boostConfidence(toBoost, 0.03);
+  }
+
+  // Format output
+  const lines = ['[INTELLIGENCE] Relevant patterns for this task:'];
+  for (let i = 0; i < topEntries.length; i++) {
+    const e = topEntries[i];
+    const display = (e.summary || e.content || '').slice(0, 80);
+    const accessed = e.accessCount || 0;
+    lines.push(`  * (${e.score.toFixed(2)}) ${display} [rank #${i + 1}, ${accessed}x accessed]`);
+  }
+
+  return lines.join('\n');
+}
+
+/**
+ * recordEdit(file) — Called from post-edit. Budget: <2ms.
+ * Appends to pending-insights.jsonl.
+ */
+function recordEdit(file, success) {
+  ensureDataDir();
+  const entry = JSON.stringify({
+    type: 'edit',
+    file: file || 'unknown',
+    // ADR-174: record failures too, not just successes — the learning substrate
+    // needs negative examples. Defaults true; an explicit false is a failed edit.
+    success: success !== false,
+    timestamp: Date.now(),
+    sessionId: sessionGet('sessionId') || null,
+  });
+  fs.appendFileSync(PENDING_PATH, entry + '\n', 'utf-8');
+  // Runaway-storage guard: pending-insights is append-only and only drained by
+  // consolidation. If it grows past ~512KB (thousands of un-consolidated edits
+  // — e.g. the daemon never ran), keep only the most recent 2000 lines so it
+  // can never grow unbounded. Cheap (a statSync per edit; rewrite only when over).
+  try {
+    if (fs.statSync(PENDING_PATH).size > 512 * 1024) {
+      const lines = fs.readFileSync(PENDING_PATH, 'utf-8').split('\n').filter(Boolean);
+      if (lines.length > 2000) fs.writeFileSync(PENDING_PATH, lines.slice(-2000).join('\n') + '\n', 'utf-8');
+    }
+  } catch (e) { /* non-fatal */ }
+}
+
+/**
+ * feedback(success) — Called from post-task. Budget: <10ms.
+ * Boosts or decays confidence for last-matched patterns.
+ */
+function feedback(success) {
+  const matchedIds = sessionGet('lastMatchedPatterns');
+  if (!matchedIds || !Array.isArray(matchedIds)) return;
+
+  const amount = success ? 0.05 : -0.02;
+  boostConfidence(matchedIds, amount);
+}
+
+function boostConfidence(ids, amount) {
+  const ranked = readJSON(RANKED_PATH);
+  if (!ranked || !ranked.entries) return;
+
+  let changed = false;
+  for (const entry of ranked.entries) {
+    if (ids.includes(entry.id)) {
+      entry.confidence = Math.max(0, Math.min(1, (entry.confidence || 0.5) + amount));
+      entry.accessCount = (entry.accessCount || 0) + 1;
+      changed = true;
+    }
+  }
+
+  if (changed) writeJSON(RANKED_PATH, ranked);
+
+  // Also update graph-state confidence
+  const graph = readJSON(GRAPH_PATH);
+  if (graph && graph.nodes) {
+    for (const id of ids) {
+      if (graph.nodes[id]) {
+        graph.nodes[id].confidence = Math.max(0, Math.min(1, (graph.nodes[id].confidence || 0.5) + amount));
+        graph.nodes[id].accessCount = (graph.nodes[id].accessCount || 0) + 1;
+      }
+    }
+    writeJSON(GRAPH_PATH, graph);
+  }
+}
+
+/**
+ * consolidate() — Called from session-end. Budget: <500ms.
+ * Processes pending insights, rebuilds edges, recomputes PageRank.
+ */
+function consolidate() {
+  ensureDataDir();
+
+  let store = readJSON(STORE_PATH);
+  if (!store || !Array.isArray(store)) {
+    return { entries: 0, edges: 0, newEntries: 0, message: 'No store to consolidate' };
+  }
+
+  // Deduplicate store entries by ID before processing (fixes #1518)
+  const preDedupCount = store.length;
+  store = deduplicateById(store);
+  // #2628: imports assign fresh IDs to repeated MEMORY.md content, so ID
+  // dedup alone never shrinks the store. Consolidate is the session-end path:
+  // content-dedup here before edge construction and persist the compacted
+  // store so subsequent sessions stay bounded.
+  store = deduplicateByContent(store);
+
+  // 1. Process pending insights
+  let newEntries = 0;
+  if (fs.existsSync(PENDING_PATH)) {
+    const lines = fs.readFileSync(PENDING_PATH, 'utf-8').trim().split('\n').filter(Boolean);
+    const editCounts = {};
+    for (const line of lines) {
+      try {
+        const insight = JSON.parse(line);
+        if (insight.file) {
+          editCounts[insight.file] = (editCounts[insight.file] || 0) + 1;
+        }
+      } catch { /* skip malformed */ }
+    }
+
+    // Create entries for frequently-edited files (3+ edits)
+    for (const [file, count] of Object.entries(editCounts)) {
+      if (count >= 3) {
+        const exists = store.some(e =>
+          (e.metadata && e.metadata.sourceFile === file && e.metadata.autoGenerated)
+        );
+        if (!exists) {
+          store.push({
+            id: `insight-${Date.now()}-${Math.random().toString(36).slice(2, 6)}`,
+            key: `frequent-edit-${path.basename(file)}`,
+            content: `File ${file} was edited ${count} times this session — likely a hot path worth monitoring.`,
+            summary: `Frequently edited: ${path.basename(file)} (${count}x)`,
+            namespace: 'insights',
+            type: 'procedural',
+            metadata: { sourceFile: file, editCount: count, autoGenerated: true },
+            createdAt: Date.now(),
+          });
+          newEntries++;
+        }
+      }
+    }
+
+    // Clear pending
+    fs.writeFileSync(PENDING_PATH, '', 'utf-8');
+  }
+
+  // 2. Confidence decay for unaccessed entries
+  const graph = readJSON(GRAPH_PATH);
+  if (graph && graph.nodes) {
+    const now = Date.now();
+    for (const id of Object.keys(graph.nodes)) {
+      const node = graph.nodes[id];
+      const hoursSinceCreation = (now - (node.createdAt || now)) / (1000 * 60 * 60);
+      if (node.accessCount === 0 && hoursSinceCreation > 24) {
+        node.confidence = Math.max(0.05, (node.confidence || 0.5) - 0.005 * Math.floor(hoursSinceCreation / 24));
+      }
+    }
+  }
+
+  // 3. Rebuild edges with updated store
+  for (const entry of store) {
+    if (!entry.id) entry.id = `entry-${Math.random().toString(36).slice(2, 8)}`;
+  }
+  const edges = buildEdges(store);
+
+  // 4. Build updated nodes
+  const nodes = {};
+  for (const entry of store) {
+    nodes[entry.id] = {
+      id: entry.id,
+      category: entry.namespace || entry.type || 'default',
+      confidence: (graph && graph.nodes && graph.nodes[entry.id])
+        ? graph.nodes[entry.id].confidence
+        : (entry.metadata && entry.metadata.confidence) || 0.5,
+      accessCount: (graph && graph.nodes && graph.nodes[entry.id])
+        ? graph.nodes[entry.id].accessCount
+        : (entry.metadata && entry.metadata.accessCount) || 0,
+      createdAt: entry.createdAt || Date.now(),
+    };
+  }
+
+  // 5. Recompute PageRank (skip if graph too large — #1531)
+  const nodeCount = Object.keys(nodes).length;
+  let pageRanks = {};
+  if (nodeCount > MAX_GRAPH_NODES) {
+    process.stderr.write("[INTELLIGENCE] WARN: Graph has " + nodeCount + " nodes (>" + MAX_GRAPH_NODES + "), skipping PageRank in consolidate\n");
+    for (const id of Object.keys(nodes)) pageRanks[id] = 1 / nodeCount;
+  } else {
+    pageRanks = computePageRank(nodes, edges, 0.85, 30);
+  }
+
+  // 6. Write updated graph. #2920 follow-up: include contentFingerprint so
+  // init()'s cache-hit gate (line ~511) doesn't unconditionally miss on the
+  // very next init after a consolidate — without this, nodeCount alone
+  // matched but contentFingerprint was undefined here vs a real hash in
+  // init()'s own write, forcing a full rebuild every time.
+  writeJSON(GRAPH_PATH, {
+    version: 1,
+    updatedAt: Date.now(),
+    nodeCount: Object.keys(nodes).length,
+    contentFingerprint: storeFingerprint(store),
+    nodes,
+    edges,
+    pageRanks,
+  });
+
+  // 7. Write updated ranked context
+  const rankedEntries = store.map(entry => {
+    const id = entry.id;
+    const content = entry.content || entry.value || '';
+    const summary = entry.summary || entry.key || '';
+    const words = tokenize(content + ' ' + summary);
+    return {
+      id,
+      content,
+      summary,
+      category: entry.namespace || entry.type || 'default',
+      confidence: nodes[id] ? nodes[id].confidence : 0.5,
+      pageRank: pageRanks[id] || 0,
+      accessCount: nodes[id] ? nodes[id].accessCount : 0,
+      words,
+    };
+  }).sort((a, b) => {
+    const scoreA = 0.6 * a.pageRank + 0.4 * a.confidence;
+    const scoreB = 0.6 * b.pageRank + 0.4 * b.confidence;
+    return scoreB - scoreA;
+  });
+
+  writeJSON(RANKED_PATH, {
+    version: 1,
+    computedAt: Date.now(),
+    entries: rankedEntries,
+  });
+
+  // 8. Persist updated store. #2920: this used to skip the write whenever
+  // dedup didn't shrink the array and no insight entries were added — but
+  // that's blind to a same-ID content edit (entry count and ID set both
+  // stay the same, only a field value changes), so an in-memory content
+  // update could be silently dropped instead of persisted. GRAPH_PATH and
+  // RANKED_PATH are rewritten unconditionally just above; writing the
+  // (already deduped, size-bounded per ADR-095 G6) store alongside them
+  // costs nothing near the <500ms budget and removes the whole bug class.
+  writeJSON(STORE_PATH, store);
+
+  // 9. Save snapshot for delta tracking
+  const updatedGraph = readJSON(GRAPH_PATH);
+  const updatedRanked = readJSON(RANKED_PATH);
+  saveSnapshot(updatedGraph, updatedRanked);
+
+  return {
+    entries: store.length,
+    edges: edges.length,
+    newEntries,
+    message: 'Consolidated',
+  };
+}
+
+// ── Snapshot for delta tracking ─────────────────────────────────────────────
+
+const SNAPSHOT_PATH = path.join(DATA_DIR, 'intelligence-snapshot.json');
+
+function saveSnapshot(graph, ranked) {
+  const snap = {
+    timestamp: Date.now(),
+    nodes: graph ? Object.keys(graph.nodes || {}).length : 0,
+    edges: graph ? (graph.edges || []).length : 0,
+    pageRankSum: 0,
+    confidences: [],
+    accessCounts: [],
+    topPatterns: [],
+  };
+
+  if (graph && graph.pageRanks) {
+    for (const v of Object.values(graph.pageRanks)) snap.pageRankSum += v;
+  }
+  if (graph && graph.nodes) {
+    for (const n of Object.values(graph.nodes)) {
+      snap.confidences.push(n.confidence || 0.5);
+      snap.accessCounts.push(n.accessCount || 0);
+    }
+  }
+  if (ranked && ranked.entries) {
+    snap.topPatterns = ranked.entries.slice(0, 10).map(e => ({
+      id: e.id,
+      summary: (e.summary || '').slice(0, 60),
+      confidence: e.confidence || 0.5,
+      pageRank: e.pageRank || 0,
+      accessCount: e.accessCount || 0,
+    }));
+  }
+
+  // Keep history: append to array, cap at 50
+  let history = readJSON(SNAPSHOT_PATH);
+  if (!Array.isArray(history)) history = [];
+  history.push(snap);
+  if (history.length > 50) history = history.slice(-50);
+  writeJSON(SNAPSHOT_PATH, history);
+}
+
+/**
+ * stats() — Diagnostic report showing intelligence health and improvement.
+ * Can be called as: node intelligence.cjs stats [--json]
+ */
+function stats(outputJson) {
+  const graph = readJSON(GRAPH_PATH);
+  const ranked = readJSON(RANKED_PATH);
+  const history = readJSON(SNAPSHOT_PATH) || [];
+  const pending = fs.existsSync(PENDING_PATH)
+    ? fs.readFileSync(PENDING_PATH, 'utf-8').trim().split('\n').filter(Boolean).length
+    : 0;
+
+  // Current state
+  const nodes = graph ? Object.keys(graph.nodes || {}).length : 0;
+  const edges = graph ? (graph.edges || []).length : 0;
+  const density = nodes > 1 ? (2 * edges) / (nodes * (nodes - 1)) : 0;
+
+  // Confidence distribution
+  const confidences = [];
+  const accessCounts = [];
+  if (graph && graph.nodes) {
+    for (const n of Object.values(graph.nodes)) {
+      confidences.push(n.confidence || 0.5);
+      accessCounts.push(n.accessCount || 0);
+    }
+  }
+  confidences.sort((a, b) => a - b);
+  const confMin = confidences.length ? confidences[0] : 0;
+  const confMax = confidences.length ? confidences[confidences.length - 1] : 0;
+  const confMean = confidences.length ? confidences.reduce((s, c) => s + c, 0) / confidences.length : 0;
+  const confMedian = confidences.length ? confidences[Math.floor(confidences.length / 2)] : 0;
+
+  // Access stats
+  const totalAccess = accessCounts.reduce((s, c) => s + c, 0);
+  const accessedCount = accessCounts.filter(c => c > 0).length;
+
+  // PageRank stats
+  let prSum = 0, prMax = 0, prMaxId = '';
+  if (graph && graph.pageRanks) {
+    for (const [id, pr] of Object.entries(graph.pageRanks)) {
+      prSum += pr;
+      if (pr > prMax) { prMax = pr; prMaxId = id; }
+    }
+  }
+
+  // Top patterns by composite score
+  const topPatterns = (ranked && ranked.entries || []).slice(0, 10).map((e, i) => ({
+    rank: i + 1,
+    summary: (e.summary || '').slice(0, 60),
+    confidence: (e.confidence || 0.5).toFixed(3),
+    pageRank: (e.pageRank || 0).toFixed(4),
+    accessed: e.accessCount || 0,
+    score: (0.6 * (e.pageRank || 0) + 0.4 * (e.confidence || 0.5)).toFixed(4),
+  }));
+
+  // Edge type breakdown
+  const edgeTypes = {};
+  if (graph && graph.edges) {
+    for (const e of graph.edges) {
+      edgeTypes[e.type || 'unknown'] = (edgeTypes[e.type || 'unknown'] || 0) + 1;
+    }
+  }
+
+  // Delta from previous snapshot
+  let delta = null;
+  if (history.length >= 2) {
+    const prev = history[history.length - 2];
+    const curr = history[history.length - 1];
+    const elapsed = (curr.timestamp - prev.timestamp) / 1000;
+    const prevConfMean = prev.confidences.length
+      ? prev.confidences.reduce((s, c) => s + c, 0) / prev.confidences.length : 0;
+    const currConfMean = curr.confidences.length
+      ? curr.confidences.reduce((s, c) => s + c, 0) / curr.confidences.length : 0;
+    const prevAccess = prev.accessCounts.reduce((s, c) => s + c, 0);
+    const currAccess = curr.accessCounts.reduce((s, c) => s + c, 0);
+
+    delta = {
+      elapsed: elapsed < 3600 ? `${Math.round(elapsed / 60)}m` : `${(elapsed / 3600).toFixed(1)}h`,
+      nodes: curr.nodes - prev.nodes,
+      edges: curr.edges - prev.edges,
+      confidenceMean: currConfMean - prevConfMean,
+      totalAccess: currAccess - prevAccess,
+    };
+  }
+
+  // Trend over all history
+  let trend = null;
+  if (history.length >= 3) {
+    const first = history[0];
+    const last = history[history.length - 1];
+    const sessions = history.length;
+    const firstConfMean = first.confidences.length
+      ? first.confidences.reduce((s, c) => s + c, 0) / first.confidences.length : 0;
+    const lastConfMean = last.confidences.length
+      ? last.confidences.reduce((s, c) => s + c, 0) / last.confidences.length : 0;
+    trend = {
+      sessions,
+      nodeGrowth: last.nodes - first.nodes,
+      edgeGrowth: last.edges - first.edges,
+      confidenceDrift: lastConfMean - firstConfMean,
+      direction: lastConfMean > firstConfMean ? 'improving' :
+                 lastConfMean < firstConfMean ? 'declining' : 'stable',
+    };
+  }
+
+  const report = {
+    graph: { nodes, edges, density: +density.toFixed(4) },
+    confidence: {
+      min: +confMin.toFixed(3), max: +confMax.toFixed(3),
+      mean: +confMean.toFixed(3), median: +confMedian.toFixed(3),
+    },
+    access: { total: totalAccess, patternsAccessed: accessedCount, patternsNeverAccessed: nodes - accessedCount },
+    pageRank: { sum: +prSum.toFixed(4), topNode: prMaxId, topNodeRank: +prMax.toFixed(4) },
+    edgeTypes,
+    pendingInsights: pending,
+    snapshots: history.length,
+    topPatterns,
+    delta,
+    trend,
+  };
+
+  if (outputJson) {
+    console.log(JSON.stringify(report, null, 2));
+    return report;
+  }
+
+  // Human-readable output
+  const bar = '+' + '-'.repeat(62) + '+';
+  console.log(bar);
+  console.log('|' + '  Intelligence Diagnostics (ADR-050)'.padEnd(62) + '|');
+  console.log(bar);
+  console.log('');
+
+  console.log('  Graph');
+  console.log(`    Nodes:    ${nodes}`);
+  console.log(`    Edges:    ${edges} (${Object.entries(edgeTypes).map(([t,c]) => `${c} ${t}`).join(', ') || 'none'})`);
+  console.log(`    Density:  ${(density * 100).toFixed(1)}%`);
+  console.log('');
+
+  console.log('  Confidence');
+  console.log(`    Min:      ${confMin.toFixed(3)}`);
+  console.log(`    Max:      ${confMax.toFixed(3)}`);
+  console.log(`    Mean:     ${confMean.toFixed(3)}`);
+  console.log(`    Median:   ${confMedian.toFixed(3)}`);
+  console.log('');
+
+  console.log('  Access');
+  console.log(`    Total accesses:     ${totalAccess}`);
+  console.log(`    Patterns used:      ${accessedCount}/${nodes}`);
+  console.log(`    Never accessed:     ${nodes - accessedCount}`);
+  console.log(`    Pending insights:   ${pending}`);
+  console.log('');
+
+  console.log('  PageRank');
+  console.log(`    Sum:      ${prSum.toFixed(4)} (should be ~1.0)`);
+  console.log(`    Top node: ${prMaxId || '(none)'} (${prMax.toFixed(4)})`);
+  console.log('');
+
+  if (topPatterns.length > 0) {
+    console.log('  Top Patterns (by composite score)');
+    console.log('  ' + '-'.repeat(60));
+    for (const p of topPatterns) {
+      console.log(`    #${p.rank}  ${p.summary}`);
+      console.log(`         conf=${p.confidence}  pr=${p.pageRank}  score=${p.score}  accessed=${p.accessed}x`);
+    }
+    console.log('');
+  }
+
+  if (delta) {
+    console.log(`  Last Delta (${delta.elapsed} ago)`);
+    const sign = v => v > 0 ? `+${v}` : `${v}`;
+    console.log(`    Nodes:      ${sign(delta.nodes)}`);
+    console.log(`    Edges:      ${sign(delta.edges)}`);
+    console.log(`    Confidence: ${delta.confidenceMean >= 0 ? '+' : ''}${delta.confidenceMean.toFixed(4)}`);
+    console.log(`    Accesses:   ${sign(delta.totalAccess)}`);
+    console.log('');
+  }
+
+  if (trend) {
+    console.log(`  Trend (${trend.sessions} snapshots)`);
+    console.log(`    Node growth:       ${trend.nodeGrowth >= 0 ? '+' : ''}${trend.nodeGrowth}`);
+    console.log(`    Edge growth:       ${trend.edgeGrowth >= 0 ? '+' : ''}${trend.edgeGrowth}`);
+    console.log(`    Confidence drift:  ${trend.confidenceDrift >= 0 ? '+' : ''}${trend.confidenceDrift.toFixed(4)}`);
+    console.log(`    Direction:         ${trend.direction.toUpperCase()}`);
+    console.log('');
+  }
+
+  if (!delta && !trend) {
+    console.log('  No history yet — run more sessions to see deltas and trends.');
+    console.log('');
+  }
+
+  console.log(bar);
+  return report;
+}
+
+module.exports = {
+  init,
+  getContext,
+  recordEdit,
+  feedback,
+  consolidate,
+  stats,
+  resolveProjectRoot,
+  projectRoot: PROJECT_ROOT,
+};
+
+// ── CLI entrypoint ──────────────────────────────────────────────────────────
+if (require.main === module) {
+  const cmd = process.argv[2];
+  const jsonFlag = process.argv.includes('--json');
+
+  const cmds = {
+    init: () => { const r = init(); console.log(JSON.stringify(r)); },
+    stats: () => { stats(jsonFlag); },
+    consolidate: () => { const r = consolidate(); console.log(JSON.stringify(r)); },
+  };
+
+  if (cmd && cmds[cmd]) {
+    cmds[cmd]();
+  } else {
+    console.log('Usage: intelligence.cjs <stats|init|consolidate> [--json]');
+    console.log('');
+    console.log('  stats         Show intelligence diagnostics and trends');
+    console.log('  stats --json  Output as JSON for programmatic use');
+    console.log('  init          Build graph and rank entries');
+    console.log('  consolidate   Process pending insights and recompute');
+  }
+}