@claude-flow/cli 3.32.9 → 3.32.11

package/.claude/skills/verification-quality/SKILL.md

@@ -1,691 +1,691 @@
----
-name: "Verification & Quality Assurance"
-description: |
-  Comprehensive truth scoring, code quality verification, and automatic rollback system with 0.95 accuracy threshold for ensuring high-quality agent outputs and codebase reliability.
----
-
-# Verification & Quality Assurance Skill
-
-## What This Skill Does
-
-This skill provides a comprehensive verification and quality assurance system that ensures code quality and correctness through:
-
-- **Truth Scoring**: Real-time reliability metrics (0.0-1.0 scale) for code, agents, and tasks
-- **Verification Checks**: Automated code correctness, security, and best practices validation
-- **Automatic Rollback**: Instant reversion of changes that fail verification (default threshold: 0.95)
-- **Quality Metrics**: Statistical analysis with trends, confidence intervals, and improvement tracking
-- **CI/CD Integration**: Export capabilities for continuous integration pipelines
-- **Real-time Monitoring**: Live dashboards and watch modes for ongoing verification
-
-> **Shipped vs. aspirational.** The *concrete, in-CI* verification stack — the 6 regression-guard jobs + the witness manifest + the tool-discoverability audit — is real and runs on every push. The truth-scoring / auto-rollback / WebSocket-dashboard surface described later in this doc is partly shipped (`ruflo verify` runs the witness checks) and partly design — treat the "CI Guards" section below as the authoritative current state.
-
-## CI Guards — what's actually shipped (current state)
-
-Ruflo's regression protection is three layers, all gated before publish. Authoritative reference: [`verification/README.md`](../../../verification/README.md).
-
-| Layer | What | CI job(s) in `.github/workflows/v3-ci.yml` | ADR |
-|---|---|---|---|
-| **1 — install/behavioral smoke** | Exercise user-visible failure modes against a real build | `smoke-install-no-bsqlite` (npm install on platforms w/o prebuilds), `plugin-hooks-smoke` (#1859/#1862 — hook flag parsing), `mcp-protocol-smoke` (#1874 — HTTP MCP wire format), `memory-import-smoke` (#1883/#1884 — WSL path + key sanitization), `mcp-roundtrip-smoke` (#1889 paired-tool round-trip + #1863 cli-no-crash + ADR-095 G2 consensus-transport) | ADR-102 |
-| **1 — discoverability gate** | Every MCP tool description must answer "use this over native when?" | `tool-descriptions-audit` — `scripts/audit-tool-descriptions.mjs`, baseline at `verification/mcp-tool-baseline.json` (monotone-decreasing: noGuidance / tooShort / duplicates) | ADR-112 |
-| **2 — cryptographic witness** | Every documented fix's load-bearing marker must still be present in dist; Ed25519-signed, per-OS bundles | `witness-verify` (ubuntu/macos/windows) — `plugins/ruflo-core/scripts/witness/verify.mjs` against `verification/<os>/manifest.md.json` | ADR-103 |
-| **3 — temporal history** | When was a regression introduced | `verification/<os>/history.jsonl` + `history.mjs` (`summary` / `regressions` / `timeline`) | ADR-103 |
-
-### Run the guards locally
-
-```bash
-# Tool-description discoverability audit (ADR-112)
-node scripts/audit-tool-descriptions.mjs                       # fails if any baseline count rises
-node scripts/audit-tool-descriptions.mjs --update-baseline     # lock the new floor after a fix lands
-
-# Behavioral smokes (each builds what it needs; safe to run individually)
-node plugins/ruflo-core/scripts/test-hooks.mjs "node $PWD/v3/@claude-flow/cli/bin/cli.js"
-node plugins/ruflo-core/scripts/test-mcp-protocol.mjs
-node plugins/ruflo-core/scripts/test-memory-import.mjs
-node plugins/ruflo-core/scripts/test-mcp-roundtrips.mjs        # #1889 paired-tool round-trip
-node plugins/ruflo-core/scripts/test-cli-no-crash.mjs          # #1863 unhandled-exception class
-node plugins/ruflo-core/scripts/test-consensus-transport.mjs   # ADR-095 G2 consensus transport
-
-# Witness manifest — regenerate + verify
-node scripts/regen-witness.mjs
-node plugins/ruflo-core/scripts/witness/verify.mjs --manifest verification/macos/manifest.md.json
-
-# Temporal history
-node plugins/ruflo-core/scripts/witness/history.mjs --history verification/macos/history.jsonl summary
-node plugins/ruflo-core/scripts/witness/history.mjs --history verification/macos/history.jsonl regressions
-```
-
-### Adding a new guard
-
-1. **Behavioral smoke** → write `plugins/ruflo-core/scripts/test-<name>.mjs`. Pattern: static dist-scan first (fast, always completes), behavioral probe second with an internal timeout + a process-level watchdog so CI never hangs. Add a step to the relevant job in `v3-ci.yml`.
-2. **Static gate with a baseline** → write `scripts/audit-<name>.mjs` that scans, counts violations, and fails if the count exceeds a monotone-decreasing baseline in `verification/<name>-baseline.json`. Support `--update-baseline`. Add a CI job; wire it into `witness-verify` `needs[]` if it should gate `publish`.
-3. **Documented-fix marker** → append `{ id, desc, file, marker }` to `verification/witness-fixes.json`, run `node scripts/regen-witness.mjs`. The marker must be a substring the fix specifically creates (not a generic pattern like `'function'`).
-
-## Prerequisites
-
-- Ruflo installed (`npx ruflo@alpha`)
-- Git repository (for rollback features)
-- Node.js 18+ (for dashboard features)
-- `@noble/ed25519` (for the witness verifier — a single runtime dep, `npm i @noble/ed25519`)
-
-## Quick Start
-
-```bash
-# View current truth scores
-npx ruflo@alpha truth
-
-# Run verification check
-npx ruflo@alpha verify check
-
-# Verify specific file with custom threshold
-npx ruflo@alpha verify check --file src/app.js --threshold 0.98
-
-# Rollback last failed verification
-npx ruflo@alpha verify rollback --last-good
-```
-
----
-
-## Complete Guide
-
-### Truth Scoring System
-
-#### View Truth Metrics
-
-Display comprehensive quality and reliability metrics for your codebase and agent tasks.
-
-**Basic Usage:**
-```bash
-# View current truth scores (default: table format)
-npx ruflo@alpha truth
-
-# View scores for specific time period
-npx ruflo@alpha truth --period 7d
-
-# View scores for specific agent
-npx ruflo@alpha truth --agent coder --period 24h
-
-# Find files/tasks below threshold
-npx ruflo@alpha truth --threshold 0.8
-```
-
-**Output Formats:**
-```bash
-# Table format (default)
-npx ruflo@alpha truth --format table
-
-# JSON for programmatic access
-npx ruflo@alpha truth --format json
-
-# CSV for spreadsheet analysis
-npx ruflo@alpha truth --format csv
-
-# HTML report with visualizations
-npx ruflo@alpha truth --format html --export report.html
-```
-
-**Real-time Monitoring:**
-```bash
-# Watch mode with live updates
-npx ruflo@alpha truth --watch
-
-# Export metrics automatically
-npx ruflo@alpha truth --export .claude-flow/metrics/truth-$(date +%Y%m%d).json
-```
-
-#### Truth Score Dashboard
-
-Example dashboard output:
-```
-📊 Truth Metrics Dashboard
-━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
-
-Overall Truth Score: 0.947 ✅
-Trend: ↗️ +2.3% (7d)
-
-Top Performers:
-  verification-agent   0.982 ⭐
-  code-analyzer       0.971 ⭐
-  test-generator      0.958 ✅
-
-Needs Attention:
-  refactor-agent      0.821 ⚠️
-  docs-generator      0.794 ⚠️
-
-Recent Tasks:
-  task-456  0.991 ✅  "Implement auth"
-  task-455  0.967 ✅  "Add tests"
-  task-454  0.743 ❌  "Refactor API"
-```
-
-#### Metrics Explained
-
-**Truth Scores (0.0-1.0):**
-- `1.0-0.95`: Excellent ⭐ (production-ready)
-- `0.94-0.85`: Good ✅ (acceptable quality)
-- `0.84-0.75`: Warning ⚠️ (needs attention)
-- `<0.75`: Critical ❌ (requires immediate action)
-
-**Trend Indicators:**
-- ↗️ Improving (positive trend)
-- → Stable (consistent performance)
-- ↘️ Declining (quality regression detected)
-
-**Statistics:**
-- **Mean Score**: Average truth score across all measurements
-- **Median Score**: Middle value (less affected by outliers)
-- **Standard Deviation**: Consistency of scores (lower = more consistent)
-- **Confidence Interval**: Statistical reliability of measurements
-
-### Verification Checks
-
-#### Run Verification
-
-Execute comprehensive verification checks on code, tasks, or agent outputs.
-
-**File Verification:**
-```bash
-# Verify single file
-npx ruflo@alpha verify check --file src/app.js
-
-# Verify directory recursively
-npx ruflo@alpha verify check --directory src/
-
-# Verify with auto-fix enabled
-npx ruflo@alpha verify check --file src/utils.js --auto-fix
-
-# Verify current working directory
-npx ruflo@alpha verify check
-```
-
-**Task Verification:**
-```bash
-# Verify specific task output
-npx ruflo@alpha verify check --task task-123
-
-# Verify with custom threshold
-npx ruflo@alpha verify check --task task-456 --threshold 0.99
-
-# Verbose output for debugging
-npx ruflo@alpha verify check --task task-789 --verbose
-```
-
-**Batch Verification:**
-```bash
-# Verify multiple files in parallel
-npx ruflo@alpha verify batch --files "*.js" --parallel
-
-# Verify with pattern matching
-npx ruflo@alpha verify batch --pattern "src/**/*.ts"
-
-# Integration test suite
-npx ruflo@alpha verify integration --test-suite full
-```
-
-#### Verification Criteria
-
-The verification system evaluates:
-
-1. **Code Correctness**
-   - Syntax validation
-   - Type checking (TypeScript)
-   - Logic flow analysis
-   - Error handling completeness
-
-2. **Best Practices**
-   - Code style adherence
-   - SOLID principles
-   - Design patterns usage
-   - Modularity and reusability
-
-3. **Security**
-   - Vulnerability scanning
-   - Secret detection
-   - Input validation
-   - Authentication/authorization checks
-
-4. **Performance**
-   - Algorithmic complexity
-   - Memory usage patterns
-   - Database query optimization
-   - Bundle size impact
-
-5. **Documentation**
-   - JSDoc/TypeDoc completeness
-   - README accuracy
-   - API documentation
-   - Code comments quality
-
-#### JSON Output for CI/CD
-
-```bash
-# Get structured JSON output
-npx ruflo@alpha verify check --json > verification.json
-
-# Example JSON structure:
-{
-  "overallScore": 0.947,
-  "passed": true,
-  "threshold": 0.95,
-  "checks": [
-    {
-      "name": "code-correctness",
-      "score": 0.98,
-      "passed": true
-    },
-    {
-      "name": "security",
-      "score": 0.91,
-      "passed": false,
-      "issues": [...]
-    }
-  ]
-}
-```
-
-### Automatic Rollback
-
-#### Rollback Failed Changes
-
-Automatically revert changes that fail verification checks.
-
-**Basic Rollback:**
-```bash
-# Rollback to last known good state
-npx ruflo@alpha verify rollback --last-good
-
-# Rollback to specific commit
-npx ruflo@alpha verify rollback --to-commit abc123
-
-# Interactive rollback with preview
-npx ruflo@alpha verify rollback --interactive
-```
-
-**Smart Rollback:**
-```bash
-# Rollback only failed files (preserve good changes)
-npx ruflo@alpha verify rollback --selective
-
-# Rollback with automatic backup
-npx ruflo@alpha verify rollback --backup-first
-
-# Dry-run mode (preview without executing)
-npx ruflo@alpha verify rollback --dry-run
-```
-
-**Rollback Performance:**
-- Git-based rollback: <1 second
-- Selective file rollback: <500ms
-- Backup creation: Automatic before rollback
-
-### Verification Reports
-
-#### Generate Reports
-
-Create detailed verification reports with metrics and visualizations.
-
-**Report Formats:**
-```bash
-# JSON report
-npx ruflo@alpha verify report --format json
-
-# HTML report with charts
-npx ruflo@alpha verify report --export metrics.html --format html
-
-# CSV for data analysis
-npx ruflo@alpha verify report --format csv --export metrics.csv
-
-# Markdown summary
-npx ruflo@alpha verify report --format markdown
-```
-
-**Time-based Reports:**
-```bash
-# Last 24 hours
-npx ruflo@alpha verify report --period 24h
-
-# Last 7 days
-npx ruflo@alpha verify report --period 7d
-
-# Last 30 days with trends
-npx ruflo@alpha verify report --period 30d --include-trends
-
-# Custom date range
-npx ruflo@alpha verify report --from 2025-01-01 --to 2025-01-31
-```
-
-**Report Content:**
-- Overall truth scores
-- Per-agent performance metrics
-- Task completion quality
-- Verification pass/fail rates
-- Rollback frequency
-- Quality improvement trends
-- Statistical confidence intervals
-
-### Interactive Dashboard
-
-#### Launch Dashboard
-
-Run interactive web-based verification dashboard with real-time updates.
-
-```bash
-# Launch dashboard on default port (3000)
-npx ruflo@alpha verify dashboard
-
-# Custom port
-npx ruflo@alpha verify dashboard --port 8080
-
-# Export dashboard data
-npx ruflo@alpha verify dashboard --export
-
-# Dashboard with auto-refresh
-npx ruflo@alpha verify dashboard --refresh 5s
-```
-
-**Dashboard Features:**
-- Real-time truth score updates (WebSocket)
-- Interactive charts and graphs
-- Agent performance comparison
-- Task history timeline
-- Rollback history viewer
-- Export to PDF/HTML
-- Filter by time period/agent/score
-
-### Configuration
-
-#### Default Configuration
-
-Set verification preferences in `.claude-flow/config.json`:
-
-```json
-{
-  "verification": {
-    "threshold": 0.95,
-    "autoRollback": true,
-    "gitIntegration": true,
-    "hooks": {
-      "preCommit": true,
-      "preTask": true,
-      "postEdit": true
-    },
-    "checks": {
-      "codeCorrectness": true,
-      "security": true,
-      "performance": true,
-      "documentation": true,
-      "bestPractices": true
-    }
-  },
-  "truth": {
-    "defaultFormat": "table",
-    "defaultPeriod": "24h",
-    "warningThreshold": 0.85,
-    "criticalThreshold": 0.75,
-    "autoExport": {
-      "enabled": true,
-      "path": ".claude-flow/metrics/truth-daily.json"
-    }
-  }
-}
-```
-
-#### Threshold Configuration
-
-**Adjust verification strictness:**
-```bash
-# Strict mode (99% accuracy required)
-npx ruflo@alpha verify check --threshold 0.99
-
-# Lenient mode (90% acceptable)
-npx ruflo@alpha verify check --threshold 0.90
-
-# Set default threshold
-npx ruflo@alpha config set verification.threshold 0.98
-```
-
-**Per-environment thresholds:**
-```json
-{
-  "verification": {
-    "thresholds": {
-      "production": 0.99,
-      "staging": 0.95,
-      "development": 0.90
-    }
-  }
-}
-```
-
-### Integration Examples
-
-#### CI/CD Integration
-
-**GitHub Actions:**
-```yaml
-name: Quality Verification
-
-on: [push, pull_request]
-
-jobs:
-  verify:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Install Dependencies
-        run: npm install
-
-      - name: Run Verification
-        run: |
-          npx ruflo@alpha verify check --json > verification.json
-
-      - name: Check Truth Score
-        run: |
-          score=$(jq '.overallScore' verification.json)
-          if (( $(echo "$score < 0.95" | bc -l) )); then
-            echo "Truth score too low: $score"
-            exit 1
-          fi
-
-      - name: Upload Report
-        uses: actions/upload-artifact@v3
-        with:
-          name: verification-report
-          path: verification.json
-```
-
-**GitLab CI:**
-```yaml
-verify:
-  stage: test
-  script:
-    - npx ruflo@alpha verify check --threshold 0.95 --json > verification.json
-    - |
-      score=$(jq '.overallScore' verification.json)
-      if [ $(echo "$score < 0.95" | bc) -eq 1 ]; then
-        echo "Verification failed with score: $score"
-        exit 1
-      fi
-  artifacts:
-    paths:
-      - verification.json
-    reports:
-      junit: verification.json
-```
-
-#### Swarm Integration
-
-Run verification automatically during swarm operations:
-
-```bash
-# Swarm with verification enabled
-npx ruflo@alpha swarm --verify --threshold 0.98
-
-# Hive Mind with auto-rollback
-npx ruflo@alpha hive-mind --verify --rollback-on-fail
-
-# Training pipeline with verification
-npx ruflo@alpha train --verify --threshold 0.99
-```
-
-#### Pair Programming Integration
-
-Enable real-time verification during collaborative development:
-
-```bash
-# Pair with verification
-npx ruflo@alpha pair --verify --real-time
-
-# Pair with custom threshold
-npx ruflo@alpha pair --verify --threshold 0.97 --auto-fix
-```
-
-### Advanced Workflows
-
-#### Continuous Verification
-
-Monitor codebase continuously during development:
-
-```bash
-# Watch directory for changes
-npx ruflo@alpha verify watch --directory src/
-
-# Watch with auto-fix
-npx ruflo@alpha verify watch --directory src/ --auto-fix
-
-# Watch with notifications
-npx ruflo@alpha verify watch --notify --threshold 0.95
-```
-
-#### Monitoring Integration
-
-Send metrics to external monitoring systems:
-
-```bash
-# Export to Prometheus
-npx ruflo@alpha truth --format json | \
-  curl -X POST https://pushgateway.example.com/metrics/job/claude-flow \
-  -d @-
-
-# Send to DataDog
-npx ruflo@alpha verify report --format json | \
-  curl -X POST "https://api.datadoghq.com/api/v1/series?api_key=${DD_API_KEY}" \
-  -H "Content-Type: application/json" \
-  -d @-
-
-# Custom webhook
-npx ruflo@alpha truth --format json | \
-  curl -X POST https://metrics.example.com/api/truth \
-  -H "Content-Type: application/json" \
-  -d @-
-```
-
-#### Pre-commit Hooks
-
-Automatically verify before commits:
-
-```bash
-# Install pre-commit hook
-npx ruflo@alpha verify install-hook --pre-commit
-
-# .git/hooks/pre-commit example:
-#!/bin/bash
-npx ruflo@alpha verify check --threshold 0.95 --json > /tmp/verify.json
-
-score=$(jq '.overallScore' /tmp/verify.json)
-if (( $(echo "$score < 0.95" | bc -l) )); then
-  echo "❌ Verification failed with score: $score"
-  echo "Run 'npx ruflo@alpha verify check --verbose' for details"
-  exit 1
-fi
-
-echo "✅ Verification passed with score: $score"
-```
-
-### Performance Metrics
-
-**Verification Speed:**
-- Single file check: <100ms
-- Directory scan: <500ms (per 100 files)
-- Full codebase analysis: <5s (typical project)
-- Truth score calculation: <50ms
-
-**Rollback Speed:**
-- Git-based rollback: <1s
-- Selective file rollback: <500ms
-- Backup creation: <2s
-
-**Dashboard Performance:**
-- Initial load: <1s
-- Real-time updates: <100ms latency (WebSocket)
-- Chart rendering: 60 FPS
-
-### Troubleshooting
-
-#### Common Issues
-
-**Low Truth Scores:**
-```bash
-# Get detailed breakdown
-npx ruflo@alpha truth --verbose --threshold 0.0
-
-# Check specific criteria
-npx ruflo@alpha verify check --verbose
-
-# View agent-specific issues
-npx ruflo@alpha truth --agent <agent-name> --format json
-```
-
-**Rollback Failures:**
-```bash
-# Check git status
-git status
-
-# View rollback history
-npx ruflo@alpha verify rollback --history
-
-# Manual rollback
-git reset --hard HEAD~1
-```
-
-**Verification Timeouts:**
-```bash
-# Increase timeout
-npx ruflo@alpha verify check --timeout 60s
-
-# Verify in batches
-npx ruflo@alpha verify batch --batch-size 10
-```
-
-### Exit Codes
-
-Verification commands return standard exit codes:
-
-- `0`: Verification passed (score ≥ threshold)
-- `1`: Verification failed (score < threshold)
-- `2`: Error during verification (invalid input, system error)
-
-### Related Commands
-
-- `npx ruflo@alpha pair` - Collaborative development with verification
-- `npx ruflo@alpha train` - Training with verification feedback
-- `npx ruflo@alpha swarm` - Multi-agent coordination with quality checks
-- `npx ruflo@alpha report` - Generate comprehensive project reports
-
-### Best Practices
-
-1. **Set Appropriate Thresholds**: Use 0.99 for critical code, 0.95 for standard, 0.90 for experimental
-2. **Enable Auto-rollback**: Prevent bad code from persisting
-3. **Monitor Trends**: Track improvement over time, not just current scores
-4. **Integrate with CI/CD**: Make verification part of your pipeline
-5. **Use Watch Mode**: Get immediate feedback during development
-6. **Export Metrics**: Track quality metrics in your monitoring system
-7. **Review Rollbacks**: Understand why changes were rejected
-8. **Train Agents**: Use verification feedback to improve agent performance
-
-### Additional Resources
-
-- Truth Scoring Algorithm: See `/docs/truth-scoring.md`
-- Verification Criteria: See `/docs/verification-criteria.md`
-- Integration Examples: See `/examples/verification/`
-- API Reference: See `/docs/api/verification.md`
+---
+name: "Verification & Quality Assurance"
+description: |
+  Comprehensive truth scoring, code quality verification, and automatic rollback system with 0.95 accuracy threshold for ensuring high-quality agent outputs and codebase reliability.
+---
+
+# Verification & Quality Assurance Skill
+
+## What This Skill Does
+
+This skill provides a comprehensive verification and quality assurance system that ensures code quality and correctness through:
+
+- **Truth Scoring**: Real-time reliability metrics (0.0-1.0 scale) for code, agents, and tasks
+- **Verification Checks**: Automated code correctness, security, and best practices validation
+- **Automatic Rollback**: Instant reversion of changes that fail verification (default threshold: 0.95)
+- **Quality Metrics**: Statistical analysis with trends, confidence intervals, and improvement tracking
+- **CI/CD Integration**: Export capabilities for continuous integration pipelines
+- **Real-time Monitoring**: Live dashboards and watch modes for ongoing verification
+
+> **Shipped vs. aspirational.** The *concrete, in-CI* verification stack — the 6 regression-guard jobs + the witness manifest + the tool-discoverability audit — is real and runs on every push. The truth-scoring / auto-rollback / WebSocket-dashboard surface described later in this doc is partly shipped (`ruflo verify` runs the witness checks) and partly design — treat the "CI Guards" section below as the authoritative current state.
+
+## CI Guards — what's actually shipped (current state)
+
+Ruflo's regression protection is three layers, all gated before publish. Authoritative reference: [`verification/README.md`](../../../verification/README.md).
+
+| Layer | What | CI job(s) in `.github/workflows/v3-ci.yml` | ADR |
+|---|---|---|---|
+| **1 — install/behavioral smoke** | Exercise user-visible failure modes against a real build | `smoke-install-no-bsqlite` (npm install on platforms w/o prebuilds), `plugin-hooks-smoke` (#1859/#1862 — hook flag parsing), `mcp-protocol-smoke` (#1874 — HTTP MCP wire format), `memory-import-smoke` (#1883/#1884 — WSL path + key sanitization), `mcp-roundtrip-smoke` (#1889 paired-tool round-trip + #1863 cli-no-crash + ADR-095 G2 consensus-transport) | ADR-102 |
+| **1 — discoverability gate** | Every MCP tool description must answer "use this over native when?" | `tool-descriptions-audit` — `scripts/audit-tool-descriptions.mjs`, baseline at `verification/mcp-tool-baseline.json` (monotone-decreasing: noGuidance / tooShort / duplicates) | ADR-112 |
+| **2 — cryptographic witness** | Every documented fix's load-bearing marker must still be present in dist; Ed25519-signed, per-OS bundles | `witness-verify` (ubuntu/macos/windows) — `plugins/ruflo-core/scripts/witness/verify.mjs` against `verification/<os>/manifest.md.json` | ADR-103 |
+| **3 — temporal history** | When was a regression introduced | `verification/<os>/history.jsonl` + `history.mjs` (`summary` / `regressions` / `timeline`) | ADR-103 |
+
+### Run the guards locally
+
+```bash
+# Tool-description discoverability audit (ADR-112)
+node scripts/audit-tool-descriptions.mjs                       # fails if any baseline count rises
+node scripts/audit-tool-descriptions.mjs --update-baseline     # lock the new floor after a fix lands
+
+# Behavioral smokes (each builds what it needs; safe to run individually)
+node plugins/ruflo-core/scripts/test-hooks.mjs "node $PWD/v3/@claude-flow/cli/bin/cli.js"
+node plugins/ruflo-core/scripts/test-mcp-protocol.mjs
+node plugins/ruflo-core/scripts/test-memory-import.mjs
+node plugins/ruflo-core/scripts/test-mcp-roundtrips.mjs        # #1889 paired-tool round-trip
+node plugins/ruflo-core/scripts/test-cli-no-crash.mjs          # #1863 unhandled-exception class
+node plugins/ruflo-core/scripts/test-consensus-transport.mjs   # ADR-095 G2 consensus transport
+
+# Witness manifest — regenerate + verify
+node scripts/regen-witness.mjs
+node plugins/ruflo-core/scripts/witness/verify.mjs --manifest verification/macos/manifest.md.json
+
+# Temporal history
+node plugins/ruflo-core/scripts/witness/history.mjs --history verification/macos/history.jsonl summary
+node plugins/ruflo-core/scripts/witness/history.mjs --history verification/macos/history.jsonl regressions
+```
+
+### Adding a new guard
+
+1. **Behavioral smoke** → write `plugins/ruflo-core/scripts/test-<name>.mjs`. Pattern: static dist-scan first (fast, always completes), behavioral probe second with an internal timeout + a process-level watchdog so CI never hangs. Add a step to the relevant job in `v3-ci.yml`.
+2. **Static gate with a baseline** → write `scripts/audit-<name>.mjs` that scans, counts violations, and fails if the count exceeds a monotone-decreasing baseline in `verification/<name>-baseline.json`. Support `--update-baseline`. Add a CI job; wire it into `witness-verify` `needs[]` if it should gate `publish`.
+3. **Documented-fix marker** → append `{ id, desc, file, marker }` to `verification/witness-fixes.json`, run `node scripts/regen-witness.mjs`. The marker must be a substring the fix specifically creates (not a generic pattern like `'function'`).
+
+## Prerequisites
+
+- Ruflo installed (`npx ruflo@alpha`)
+- Git repository (for rollback features)
+- Node.js 18+ (for dashboard features)
+- `@noble/ed25519` (for the witness verifier — a single runtime dep, `npm i @noble/ed25519`)
+
+## Quick Start
+
+```bash
+# View current truth scores
+npx ruflo@alpha truth
+
+# Run verification check
+npx ruflo@alpha verify check
+
+# Verify specific file with custom threshold
+npx ruflo@alpha verify check --file src/app.js --threshold 0.98
+
+# Rollback last failed verification
+npx ruflo@alpha verify rollback --last-good
+```
+
+---
+
+## Complete Guide
+
+### Truth Scoring System
+
+#### View Truth Metrics
+
+Display comprehensive quality and reliability metrics for your codebase and agent tasks.
+
+**Basic Usage:**
+```bash
+# View current truth scores (default: table format)
+npx ruflo@alpha truth
+
+# View scores for specific time period
+npx ruflo@alpha truth --period 7d
+
+# View scores for specific agent
+npx ruflo@alpha truth --agent coder --period 24h
+
+# Find files/tasks below threshold
+npx ruflo@alpha truth --threshold 0.8
+```
+
+**Output Formats:**
+```bash
+# Table format (default)
+npx ruflo@alpha truth --format table
+
+# JSON for programmatic access
+npx ruflo@alpha truth --format json
+
+# CSV for spreadsheet analysis
+npx ruflo@alpha truth --format csv
+
+# HTML report with visualizations
+npx ruflo@alpha truth --format html --export report.html
+```
+
+**Real-time Monitoring:**
+```bash
+# Watch mode with live updates
+npx ruflo@alpha truth --watch
+
+# Export metrics automatically
+npx ruflo@alpha truth --export .claude-flow/metrics/truth-$(date +%Y%m%d).json
+```
+
+#### Truth Score Dashboard
+
+Example dashboard output:
+```
+📊 Truth Metrics Dashboard
+━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
+
+Overall Truth Score: 0.947 ✅
+Trend: ↗️ +2.3% (7d)
+
+Top Performers:
+  verification-agent   0.982 ⭐
+  code-analyzer       0.971 ⭐
+  test-generator      0.958 ✅
+
+Needs Attention:
+  refactor-agent      0.821 ⚠️
+  docs-generator      0.794 ⚠️
+
+Recent Tasks:
+  task-456  0.991 ✅  "Implement auth"
+  task-455  0.967 ✅  "Add tests"
+  task-454  0.743 ❌  "Refactor API"
+```
+
+#### Metrics Explained
+
+**Truth Scores (0.0-1.0):**
+- `1.0-0.95`: Excellent ⭐ (production-ready)
+- `0.94-0.85`: Good ✅ (acceptable quality)
+- `0.84-0.75`: Warning ⚠️ (needs attention)
+- `<0.75`: Critical ❌ (requires immediate action)
+
+**Trend Indicators:**
+- ↗️ Improving (positive trend)
+- → Stable (consistent performance)
+- ↘️ Declining (quality regression detected)
+
+**Statistics:**
+- **Mean Score**: Average truth score across all measurements
+- **Median Score**: Middle value (less affected by outliers)
+- **Standard Deviation**: Consistency of scores (lower = more consistent)
+- **Confidence Interval**: Statistical reliability of measurements
+
+### Verification Checks
+
+#### Run Verification
+
+Execute comprehensive verification checks on code, tasks, or agent outputs.
+
+**File Verification:**
+```bash
+# Verify single file
+npx ruflo@alpha verify check --file src/app.js
+
+# Verify directory recursively
+npx ruflo@alpha verify check --directory src/
+
+# Verify with auto-fix enabled
+npx ruflo@alpha verify check --file src/utils.js --auto-fix
+
+# Verify current working directory
+npx ruflo@alpha verify check
+```
+
+**Task Verification:**
+```bash
+# Verify specific task output
+npx ruflo@alpha verify check --task task-123
+
+# Verify with custom threshold
+npx ruflo@alpha verify check --task task-456 --threshold 0.99
+
+# Verbose output for debugging
+npx ruflo@alpha verify check --task task-789 --verbose
+```
+
+**Batch Verification:**
+```bash
+# Verify multiple files in parallel
+npx ruflo@alpha verify batch --files "*.js" --parallel
+
+# Verify with pattern matching
+npx ruflo@alpha verify batch --pattern "src/**/*.ts"
+
+# Integration test suite
+npx ruflo@alpha verify integration --test-suite full
+```
+
+#### Verification Criteria
+
+The verification system evaluates:
+
+1. **Code Correctness**
+   - Syntax validation
+   - Type checking (TypeScript)
+   - Logic flow analysis
+   - Error handling completeness
+
+2. **Best Practices**
+   - Code style adherence
+   - SOLID principles
+   - Design patterns usage
+   - Modularity and reusability
+
+3. **Security**
+   - Vulnerability scanning
+   - Secret detection
+   - Input validation
+   - Authentication/authorization checks
+
+4. **Performance**
+   - Algorithmic complexity
+   - Memory usage patterns
+   - Database query optimization
+   - Bundle size impact
+
+5. **Documentation**
+   - JSDoc/TypeDoc completeness
+   - README accuracy
+   - API documentation
+   - Code comments quality
+
+#### JSON Output for CI/CD
+
+```bash
+# Get structured JSON output
+npx ruflo@alpha verify check --json > verification.json
+
+# Example JSON structure:
+{
+  "overallScore": 0.947,
+  "passed": true,
+  "threshold": 0.95,
+  "checks": [
+    {
+      "name": "code-correctness",
+      "score": 0.98,
+      "passed": true
+    },
+    {
+      "name": "security",
+      "score": 0.91,
+      "passed": false,
+      "issues": [...]
+    }
+  ]
+}
+```
+
+### Automatic Rollback
+
+#### Rollback Failed Changes
+
+Automatically revert changes that fail verification checks.
+
+**Basic Rollback:**
+```bash
+# Rollback to last known good state
+npx ruflo@alpha verify rollback --last-good
+
+# Rollback to specific commit
+npx ruflo@alpha verify rollback --to-commit abc123
+
+# Interactive rollback with preview
+npx ruflo@alpha verify rollback --interactive
+```
+
+**Smart Rollback:**
+```bash
+# Rollback only failed files (preserve good changes)
+npx ruflo@alpha verify rollback --selective
+
+# Rollback with automatic backup
+npx ruflo@alpha verify rollback --backup-first
+
+# Dry-run mode (preview without executing)
+npx ruflo@alpha verify rollback --dry-run
+```
+
+**Rollback Performance:**
+- Git-based rollback: <1 second
+- Selective file rollback: <500ms
+- Backup creation: Automatic before rollback
+
+### Verification Reports
+
+#### Generate Reports
+
+Create detailed verification reports with metrics and visualizations.
+
+**Report Formats:**
+```bash
+# JSON report
+npx ruflo@alpha verify report --format json
+
+# HTML report with charts
+npx ruflo@alpha verify report --export metrics.html --format html
+
+# CSV for data analysis
+npx ruflo@alpha verify report --format csv --export metrics.csv
+
+# Markdown summary
+npx ruflo@alpha verify report --format markdown
+```
+
+**Time-based Reports:**
+```bash
+# Last 24 hours
+npx ruflo@alpha verify report --period 24h
+
+# Last 7 days
+npx ruflo@alpha verify report --period 7d
+
+# Last 30 days with trends
+npx ruflo@alpha verify report --period 30d --include-trends
+
+# Custom date range
+npx ruflo@alpha verify report --from 2025-01-01 --to 2025-01-31
+```
+
+**Report Content:**
+- Overall truth scores
+- Per-agent performance metrics
+- Task completion quality
+- Verification pass/fail rates
+- Rollback frequency
+- Quality improvement trends
+- Statistical confidence intervals
+
+### Interactive Dashboard
+
+#### Launch Dashboard
+
+Run interactive web-based verification dashboard with real-time updates.
+
+```bash
+# Launch dashboard on default port (3000)
+npx ruflo@alpha verify dashboard
+
+# Custom port
+npx ruflo@alpha verify dashboard --port 8080
+
+# Export dashboard data
+npx ruflo@alpha verify dashboard --export
+
+# Dashboard with auto-refresh
+npx ruflo@alpha verify dashboard --refresh 5s
+```
+
+**Dashboard Features:**
+- Real-time truth score updates (WebSocket)
+- Interactive charts and graphs
+- Agent performance comparison
+- Task history timeline
+- Rollback history viewer
+- Export to PDF/HTML
+- Filter by time period/agent/score
+
+### Configuration
+
+#### Default Configuration
+
+Set verification preferences in `.claude-flow/config.json`:
+
+```json
+{
+  "verification": {
+    "threshold": 0.95,
+    "autoRollback": true,
+    "gitIntegration": true,
+    "hooks": {
+      "preCommit": true,
+      "preTask": true,
+      "postEdit": true
+    },
+    "checks": {
+      "codeCorrectness": true,
+      "security": true,
+      "performance": true,
+      "documentation": true,
+      "bestPractices": true
+    }
+  },
+  "truth": {
+    "defaultFormat": "table",
+    "defaultPeriod": "24h",
+    "warningThreshold": 0.85,
+    "criticalThreshold": 0.75,
+    "autoExport": {
+      "enabled": true,
+      "path": ".claude-flow/metrics/truth-daily.json"
+    }
+  }
+}
+```
+
+#### Threshold Configuration
+
+**Adjust verification strictness:**
+```bash
+# Strict mode (99% accuracy required)
+npx ruflo@alpha verify check --threshold 0.99
+
+# Lenient mode (90% acceptable)
+npx ruflo@alpha verify check --threshold 0.90
+
+# Set default threshold
+npx ruflo@alpha config set verification.threshold 0.98
+```
+
+**Per-environment thresholds:**
+```json
+{
+  "verification": {
+    "thresholds": {
+      "production": 0.99,
+      "staging": 0.95,
+      "development": 0.90
+    }
+  }
+}
+```
+
+### Integration Examples
+
+#### CI/CD Integration
+
+**GitHub Actions:**
+```yaml
+name: Quality Verification
+
+on: [push, pull_request]
+
+jobs:
+  verify:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Dependencies
+        run: npm install
+
+      - name: Run Verification
+        run: |
+          npx ruflo@alpha verify check --json > verification.json
+
+      - name: Check Truth Score
+        run: |
+          score=$(jq '.overallScore' verification.json)
+          if (( $(echo "$score < 0.95" | bc -l) )); then
+            echo "Truth score too low: $score"
+            exit 1
+          fi
+
+      - name: Upload Report
+        uses: actions/upload-artifact@v3
+        with:
+          name: verification-report
+          path: verification.json
+```
+
+**GitLab CI:**
+```yaml
+verify:
+  stage: test
+  script:
+    - npx ruflo@alpha verify check --threshold 0.95 --json > verification.json
+    - |
+      score=$(jq '.overallScore' verification.json)
+      if [ $(echo "$score < 0.95" | bc) -eq 1 ]; then
+        echo "Verification failed with score: $score"
+        exit 1
+      fi
+  artifacts:
+    paths:
+      - verification.json
+    reports:
+      junit: verification.json
+```
+
+#### Swarm Integration
+
+Run verification automatically during swarm operations:
+
+```bash
+# Swarm with verification enabled
+npx ruflo@alpha swarm --verify --threshold 0.98
+
+# Hive Mind with auto-rollback
+npx ruflo@alpha hive-mind --verify --rollback-on-fail
+
+# Training pipeline with verification
+npx ruflo@alpha train --verify --threshold 0.99
+```
+
+#### Pair Programming Integration
+
+Enable real-time verification during collaborative development:
+
+```bash
+# Pair with verification
+npx ruflo@alpha pair --verify --real-time
+
+# Pair with custom threshold
+npx ruflo@alpha pair --verify --threshold 0.97 --auto-fix
+```
+
+### Advanced Workflows
+
+#### Continuous Verification
+
+Monitor codebase continuously during development:
+
+```bash
+# Watch directory for changes
+npx ruflo@alpha verify watch --directory src/
+
+# Watch with auto-fix
+npx ruflo@alpha verify watch --directory src/ --auto-fix
+
+# Watch with notifications
+npx ruflo@alpha verify watch --notify --threshold 0.95
+```
+
+#### Monitoring Integration
+
+Send metrics to external monitoring systems:
+
+```bash
+# Export to Prometheus
+npx ruflo@alpha truth --format json | \
+  curl -X POST https://pushgateway.example.com/metrics/job/claude-flow \
+  -d @-
+
+# Send to DataDog
+npx ruflo@alpha verify report --format json | \
+  curl -X POST "https://api.datadoghq.com/api/v1/series?api_key=${DD_API_KEY}" \
+  -H "Content-Type: application/json" \
+  -d @-
+
+# Custom webhook
+npx ruflo@alpha truth --format json | \
+  curl -X POST https://metrics.example.com/api/truth \
+  -H "Content-Type: application/json" \
+  -d @-
+```
+
+#### Pre-commit Hooks
+
+Automatically verify before commits:
+
+```bash
+# Install pre-commit hook
+npx ruflo@alpha verify install-hook --pre-commit
+
+# .git/hooks/pre-commit example:
+#!/bin/bash
+npx ruflo@alpha verify check --threshold 0.95 --json > /tmp/verify.json
+
+score=$(jq '.overallScore' /tmp/verify.json)
+if (( $(echo "$score < 0.95" | bc -l) )); then
+  echo "❌ Verification failed with score: $score"
+  echo "Run 'npx ruflo@alpha verify check --verbose' for details"
+  exit 1
+fi
+
+echo "✅ Verification passed with score: $score"
+```
+
+### Performance Metrics
+
+**Verification Speed:**
+- Single file check: <100ms
+- Directory scan: <500ms (per 100 files)
+- Full codebase analysis: <5s (typical project)
+- Truth score calculation: <50ms
+
+**Rollback Speed:**
+- Git-based rollback: <1s
+- Selective file rollback: <500ms
+- Backup creation: <2s
+
+**Dashboard Performance:**
+- Initial load: <1s
+- Real-time updates: <100ms latency (WebSocket)
+- Chart rendering: 60 FPS
+
+### Troubleshooting
+
+#### Common Issues
+
+**Low Truth Scores:**
+```bash
+# Get detailed breakdown
+npx ruflo@alpha truth --verbose --threshold 0.0
+
+# Check specific criteria
+npx ruflo@alpha verify check --verbose
+
+# View agent-specific issues
+npx ruflo@alpha truth --agent <agent-name> --format json
+```
+
+**Rollback Failures:**
+```bash
+# Check git status
+git status
+
+# View rollback history
+npx ruflo@alpha verify rollback --history
+
+# Manual rollback
+git reset --hard HEAD~1
+```
+
+**Verification Timeouts:**
+```bash
+# Increase timeout
+npx ruflo@alpha verify check --timeout 60s
+
+# Verify in batches
+npx ruflo@alpha verify batch --batch-size 10
+```
+
+### Exit Codes
+
+Verification commands return standard exit codes:
+
+- `0`: Verification passed (score ≥ threshold)
+- `1`: Verification failed (score < threshold)
+- `2`: Error during verification (invalid input, system error)
+
+### Related Commands
+
+- `npx ruflo@alpha pair` - Collaborative development with verification
+- `npx ruflo@alpha train` - Training with verification feedback
+- `npx ruflo@alpha swarm` - Multi-agent coordination with quality checks
+- `npx ruflo@alpha report` - Generate comprehensive project reports
+
+### Best Practices
+
+1. **Set Appropriate Thresholds**: Use 0.99 for critical code, 0.95 for standard, 0.90 for experimental
+2. **Enable Auto-rollback**: Prevent bad code from persisting
+3. **Monitor Trends**: Track improvement over time, not just current scores
+4. **Integrate with CI/CD**: Make verification part of your pipeline
+5. **Use Watch Mode**: Get immediate feedback during development
+6. **Export Metrics**: Track quality metrics in your monitoring system
+7. **Review Rollbacks**: Understand why changes were rejected
+8. **Train Agents**: Use verification feedback to improve agent performance
+
+### Additional Resources
+
+- Truth Scoring Algorithm: See `/docs/truth-scoring.md`
+- Verification Criteria: See `/docs/verification-criteria.md`
+- Integration Examples: See `/examples/verification/`
+- API Reference: See `/docs/api/verification.md`