@claude-flow/cli 3.10.36 → 3.10.38

package/scripts/pretrain-from-github.mjs

@@ -1,358 +1,358 @@
-#!/usr/bin/env node
-// pretrain-from-github.mjs — pretrain ruflo's self-learning system from its
-// own GitHub history (commits + issues). Each commit/issue becomes one
-// trajectory through the SONA + EWC++ pipeline; Structured Distillation
-// (ADR-076) compresses each into the 4-field schema before embedding.
-//
-// What this proves:
-//   - globalStats.{trajectoriesRecorded, patternsLearned, signalsProcessed}
-//     all move from a measured before to a measured after.
-//   - neural_patterns.patternCount grows.
-//   - memory-bridge entries grow.
-//   - The unified-stats aggregator's consistency block stays clean.
-//   - Every item gets a learningPath of 'trajectory-pipeline' (not 'recorded-only').
-//
-// Usage:
-//   node scripts/pretrain-from-github.mjs                   # 50 commits + 30 issues
-//   COMMITS=200 ISSUES=100 node scripts/pretrain-from-github.mjs
-//   SOURCE=git node scripts/pretrain-from-github.mjs        # git only, skip gh
-//   BENCH_JSON=1 node scripts/pretrain-from-github.mjs      # machine-readable
-//   BENCH_NO_WRITE=1 node scripts/pretrain-from-github.mjs  # don't write a run JSON
-//
-// Repro from a fresh checkout:
-//   git clone https://github.com/ruvnet/ruflo && cd ruflo
-//   npm install && ( cd v3/@claude-flow/cli && npx tsc -b )
-//   node v3/@claude-flow/cli/scripts/pretrain-from-github.mjs
-
-import { execSync } from 'node:child_process';
-import { writeFileSync, mkdirSync } from 'node:fs';
-import { fileURLToPath } from 'node:url';
-import { dirname, join, resolve } from 'node:path';
-import { performance } from 'node:perf_hooks';
-
-const SCRIPT_DIR = dirname(fileURLToPath(import.meta.url));
-const CLI_ROOT = resolve(SCRIPT_DIR, '..');
-const RUFLO_ROOT = resolve(SCRIPT_DIR, '../../../..');
-const RUNS_DIR = join(RUFLO_ROOT, 'docs', 'benchmarks', 'runs');
-
-// ADR-084 cross-repo support — REPO_ROOT and GH_REPO env-overridable so the
-// same script can pretrain on agentdb / agentic-flow / any other repo for
-// generalisation testing. Defaults preserve ruflo behaviour.
-const REPO_ROOT = process.env.REPO_ROOT ? resolve(process.env.REPO_ROOT) : RUFLO_ROOT;
-const GH_REPO   = process.env.GH_REPO   || 'ruvnet/ruflo';
-
-const COMMITS = Number(process.env.COMMITS) || 50;
-const ISSUES  = Number(process.env.ISSUES)  || 30;
-const SOURCE  = process.env.SOURCE || 'all'; // 'all' | 'git' | 'issues'
-
-// ---------------------------------------------------------------------------
-// Harvesters
-// ---------------------------------------------------------------------------
-
-// ADR-078 outcome signal — classify each commit by whether it was reverted,
-// hotfix-followed, or stuck. Operates on the harvested-commits window plus a
-// wider lookahead window for revert/hotfix detection.
-//
-// Verdicts emitted:
-//   success — landed cleanly, no later commit reverted or fixed it
-//   reverted — a later commit subject starts with `Revert "<this subject>"`
-//   hotfixed — a later commit (within HOTFIX_WINDOW_COMMITS) shares >=50%
-//              of the same touched files AND subject contains fix|hotfix|patch
-//
-// The "later" direction is git-log order (newest first → we look at older
-// indices in the lookahead, which are NEWER commits chronologically).
-const HOTFIX_WINDOW_COMMITS = Number(process.env.HOTFIX_WINDOW_COMMITS) || 20;
-const HOTFIX_FILE_OVERLAP = Number(process.env.HOTFIX_FILE_OVERLAP) || 0.5;
-const HOTFIX_KEYWORDS = /\b(fix|hotfix|patch|revert|bugfix|fixup)\b/i;
-
-function harvestCommits(n) {
-  if (SOURCE === 'issues') return [];
-  const fmt = '%H%x00%s%x00%b%x01';
-  // Pull a wider window so we have lookahead for revert/hotfix detection
-  // without changing the trained set size n.
-  const lookahead = HOTFIX_WINDOW_COMMITS;
-  const raw = execSync(
-    `git log --pretty=format:'${fmt}' -n ${n + lookahead} 2>/dev/null`,
-    { cwd: REPO_ROOT, encoding: 'utf-8', maxBuffer: 64 * 1024 * 1024 },
-  );
-
-  // Parse all blocks (window + lookahead).
-  const all = [];
-  for (const block of raw.split('\x01')) {
-    if (!block.trim()) continue;
-    const [sha, subject, body] = block.split('\x00');
-    if (!sha || !subject) continue;
-    all.push({ sha, subject: subject.trim(), body: (body || '').trim() });
-  }
-
-  // For each commit in the trained slice, get its touched files.
-  const filesCache = new Map();
-  const filesOf = (sha) => {
-    if (filesCache.has(sha)) return filesCache.get(sha);
-    try {
-      const out = execSync(
-        `git show --pretty=format: --name-only ${sha} 2>/dev/null`,
-        { cwd: REPO_ROOT, encoding: 'utf-8', maxBuffer: 8 * 1024 * 1024 },
-      ).trim().split('\n').filter(Boolean);
-      filesCache.set(sha, new Set(out));
-      return filesCache.get(sha);
-    } catch {
-      filesCache.set(sha, new Set());
-      return filesCache.get(sha);
-    }
-  };
-
-  // Build a revert-target map: any commit whose subject starts with
-  // `Revert "<X>"` flags X as reverted.
-  const revertedSubjects = new Set();
-  for (const c of all) {
-    const m = c.subject.match(/^Revert\s+"(.+?)"/);
-    if (m) revertedSubjects.add(m[1].trim());
-  }
-
-  const trained = all.slice(0, n);
-  const entries = [];
-  for (let i = 0; i < trained.length; i++) {
-    const c = trained[i];
-    const myFiles = filesOf(c.sha);
-
-    let verdict = 'success';
-    let outcomeNote = null;
-
-    // Reverted? Check if any later (lower-index = newer) commit reverted us.
-    if (revertedSubjects.has(c.subject)) {
-      verdict = 'reverted';
-      outcomeNote = 'subject reverted by a later commit';
-    } else {
-      // Hotfixed? A later commit within HOTFIX_WINDOW_COMMITS shares files
-      // AND has fix/hotfix in its subject.
-      const start = Math.max(0, i - HOTFIX_WINDOW_COMMITS);
-      for (let j = start; j < i; j++) {
-        const later = trained[j];
-        if (!HOTFIX_KEYWORDS.test(later.subject)) continue;
-        const laterFiles = filesOf(later.sha);
-        if (laterFiles.size === 0 || myFiles.size === 0) continue;
-        let overlap = 0;
-        for (const f of laterFiles) if (myFiles.has(f)) overlap++;
-        // Use min() so a small targeted fix on a big change still triggers
-        // (semantic: "≥half of the smaller commit's files overlap").
-        const overlapFrac = overlap / Math.min(laterFiles.size, myFiles.size);
-        if (overlapFrac >= HOTFIX_FILE_OVERLAP) {
-          verdict = 'hotfixed';
-          outcomeNote = `${(overlapFrac * 100).toFixed(0)}% file overlap with later fix ${later.sha.slice(0, 8)}`;
-          break;
-        }
-      }
-    }
-
-    entries.push({
-      source: 'commit',
-      id: `commit-${c.sha.slice(0, 12)}`,
-      subject: c.subject,
-      body: c.body,
-      verdict,
-      outcomeNote,
-      content: `${c.subject}\n\n${c.body}`.slice(0, 8192),
-    });
-  }
-  return entries;
-}
-
-function harvestIssues(n) {
-  if (SOURCE === 'git') return [];
-  try {
-    const raw = execSync(
-      `gh issue list --repo ${GH_REPO} --state all --limit ${n} --json number,title,body,state,closedAt 2>/dev/null`,
-      { cwd: REPO_ROOT, encoding: 'utf-8', maxBuffer: 64 * 1024 * 1024 },
-    );
-    const items = JSON.parse(raw);
-    return items.map((i) => ({
-      source: 'issue',
-      id: `issue-${i.number}`,
-      subject: i.title,
-      body: (i.body || '').slice(0, 8192),
-      // closed = success outcome; open = partial (in-progress).
-      verdict: i.state === 'CLOSED' ? 'success' : 'partial',
-      content: `${i.title}\n\n${(i.body || '').slice(0, 8192)}`,
-    }));
-  } catch (err) {
-    console.error(`gh issue harvest skipped (${err.message?.slice(0, 60)}). Set SOURCE=git to silence.`);
-    return [];
-  }
-}
-
-// ---------------------------------------------------------------------------
-// Main
-// ---------------------------------------------------------------------------
-
-async function main() {
-  const intel = await import(join(CLI_ROOT, 'dist/src/memory/intelligence.js'));
-  const neural = await import(join(CLI_ROOT, 'dist/src/mcp-tools/neural-tools.js'));
-  const { distillAndSerialise } = await import(join(CLI_ROOT, 'dist/src/memory/structured-distill.js'));
-
-  // §1 — record the baseline (no clear; we want to learn ON TOP of whatever
-  // history the user already has).
-  const unified0 = await intel.getUnifiedLearningStats();
-  const before = {
-    trajectoriesRecorded: unified0.global.trajectoriesRecorded,
-    patternsLearned: unified0.global.patternsLearned,
-    signalsProcessed: unified0.global.signalsProcessed,
-    neuralPatternCount: unified0.neuralPatterns.patternCount,
-    memoryBridgeTotal: unified0.memoryBridge.totalEntries,
-  };
-
-  // §2 — harvest
-  const tHarvest0 = performance.now();
-  const commits = harvestCommits(COMMITS);
-  const issues = harvestIssues(ISSUES);
-  const items = [...commits, ...issues];
-  const harvestMs = performance.now() - tHarvest0;
-
-  if (!process.env.BENCH_JSON) {
-    console.log(`# Pretrain from ruflo GitHub history`);
-    console.log(`Harvested: ${commits.length} commits + ${issues.length} issues = ${items.length} trajectories (${harvestMs.toFixed(0)} ms)`);
-  }
-
-  // §3 — feed each item through the trajectory pipeline. The harvester
-  // emits one of: success | partial | reverted | hotfixed. We map this to
-  // the trajectory pipeline's binary verdict {success, partial} since the
-  // pipeline doesn't accept arbitrary strings — but we preserve the original
-  // outcome in metadata + the summary's verdictMix so the signal isn't lost.
-  const verdictToPipeline = (v) => {
-    if (v === 'success') return 'success';
-    if (v === 'partial') return 'partial';
-    if (v === 'reverted') return 'partial';   // a revert is the strongest "this was wrong" signal we have
-    if (v === 'hotfixed') return 'partial';   // a same-files fix-followup is "needs adjustment"
-    return 'success';
-  };
-  const verdictMix = { success: 0, partial: 0, reverted: 0, hotfixed: 0 };
-  const tFeed0 = performance.now();
-  let trained = 0;
-  let failed = 0;
-  const failures = [];
-  for (const item of items) {
-    try {
-      const distilled = distillAndSerialise(item.content);
-      verdictMix[item.verdict] = (verdictMix[item.verdict] ?? 0) + 1;
-      await intel.recordTrajectory(
-        [{
-          type: 'result',
-          content: distilled,
-          metadata: {
-            source: item.source,
-            id: item.id,
-            subject: item.subject.slice(0, 200),
-            outcomeVerdict: item.verdict,
-            outcomeNote: item.outcomeNote ?? null,
-          },
-          timestamp: Date.now(),
-        }],
-        verdictToPipeline(item.verdict),
-      );
-      trained++;
-    } catch (err) {
-      failed++;
-      if (failures.length < 5) failures.push({ id: item.id, error: String(err.message).slice(0, 120) });
-    }
-  }
-  const feedMs = performance.now() - tFeed0;
-  intel.flushIntelligenceStats();
-
-  // §4 — also seed the neural store directly from the same items so
-  // `neural_patterns list` reflects them (closes the "globalStats moved but
-  // neural_patterns didn't" consistency note from ADR-075).
-  const tSeed0 = performance.now();
-  const neuralItems = items.map((item) => ({
-    name: item.subject.slice(0, 200),
-    type: item.source === 'commit' ? 'history-commit' : 'history-issue',
-    content: distillAndSerialise(item.content),
-    metadata: { source: item.source, id: item.id, verdict: item.verdict },
-  }));
-  const seedResult = await neural.storeNeuralPatterns(neuralItems);
-  const seedMs = performance.now() - tSeed0;
-
-  // §5 — read the after-counters via the unified aggregator (this is what
-  // hooks_intelligence_unified-stats would return for a live caller).
-  const unified1 = await intel.getUnifiedLearningStats();
-  const after = {
-    trajectoriesRecorded: unified1.global.trajectoriesRecorded,
-    patternsLearned: unified1.global.patternsLearned,
-    signalsProcessed: unified1.global.signalsProcessed,
-    neuralPatternCount: unified1.neuralPatterns.patternCount,
-    memoryBridgeTotal: unified1.memoryBridge.totalEntries,
-  };
-
-  const deltas = Object.fromEntries(
-    Object.keys(after).map((k) => [k, after[k] - before[k]]),
-  );
-
-  const summary = {
-    runAt: new Date().toISOString(),
-    benchmark: 'pretrain-from-github',
-    source: SOURCE,
-    config: { COMMITS, ISSUES },
-    harvest: {
-      commits: commits.length,
-      issues: issues.length,
-      total: items.length,
-      harvestMs: Number(harvestMs.toFixed(2)),
-    },
-    feed: {
-      trained,
-      failed,
-      avgLatencyMs: items.length > 0 ? Number((feedMs / items.length).toFixed(2)) : 0,
-      totalMs: Number(feedMs.toFixed(2)),
-      sampleFailures: failures,
-      verdictMix,   // ADR-078 outcome signal — counts per harvested verdict
-    },
-    seedNeuralStore: {
-      stored: seedResult.stored,
-      total: seedResult.total,
-      seedMs: Number(seedMs.toFixed(2)),
-    },
-    before,
-    after,
-    deltas,
-    consistency: unified1.consistency,
-    passed:
-      trained === items.length &&
-      deltas.trajectoriesRecorded >= items.length &&
-      deltas.neuralPatternCount >= items.length,
-  };
-
-  if (process.env.BENCH_JSON) {
-    console.log(JSON.stringify(summary, null, 2));
-  } else {
-    console.log('');
-    console.log('| Counter | Before | After | Δ |');
-    console.log('|---|---:|---:|---:|');
-    for (const k of Object.keys(after)) {
-      console.log(`| ${k} | ${before[k]} | ${after[k]} | +${deltas[k]} |`);
-    }
-    console.log('');
-    console.log(`Trained via trajectory pipeline: ${trained}/${items.length}`);
-    console.log(`Failed: ${failed}`);
-    console.log(`Avg latency per trajectory: ${summary.feed.avgLatencyMs} ms`);
-    console.log(`Neural store seeded: ${seedResult.stored}/${seedResult.total}`);
-    console.log(`Verdict mix: success=${verdictMix.success} partial=${verdictMix.partial} reverted=${verdictMix.reverted} hotfixed=${verdictMix.hotfixed}`);
-    console.log(`Overall: ${summary.passed ? '✅ PASSED' : '⚠️  partial'}`);
-    if (unified1.consistency.notes.length > 0) {
-      console.log(`\nConsistency notes:`);
-      for (const n of unified1.consistency.notes) console.log(`  • ${n}`);
-    }
-  }
-
-  if (!process.env.BENCH_NO_WRITE) {
-    mkdirSync(RUNS_DIR, { recursive: true });
-    const stamp = summary.runAt.replace(/[:.]/g, '-');
-    writeFileSync(join(RUNS_DIR, `pretrain-from-github-${stamp}.json`), JSON.stringify(summary, null, 2));
-    writeFileSync(join(RUNS_DIR, 'pretrain-from-github-latest.json'), JSON.stringify(summary, null, 2));
-    if (!process.env.BENCH_JSON) console.log(`\nWrote ${join(RUNS_DIR, `pretrain-from-github-${stamp}.json`)}`);
-  }
-
-  // ONNX runtime keeps a worker thread alive — force exit so this can be used
-  // as a CI step or chained with other scripts.
-  process.exit(summary.passed ? 0 : 1);
-}
-
-main().catch((err) => { console.error(err); process.exit(1); });
+#!/usr/bin/env node
+// pretrain-from-github.mjs — pretrain ruflo's self-learning system from its
+// own GitHub history (commits + issues). Each commit/issue becomes one
+// trajectory through the SONA + EWC++ pipeline; Structured Distillation
+// (ADR-076) compresses each into the 4-field schema before embedding.
+//
+// What this proves:
+//   - globalStats.{trajectoriesRecorded, patternsLearned, signalsProcessed}
+//     all move from a measured before to a measured after.
+//   - neural_patterns.patternCount grows.
+//   - memory-bridge entries grow.
+//   - The unified-stats aggregator's consistency block stays clean.
+//   - Every item gets a learningPath of 'trajectory-pipeline' (not 'recorded-only').
+//
+// Usage:
+//   node scripts/pretrain-from-github.mjs                   # 50 commits + 30 issues
+//   COMMITS=200 ISSUES=100 node scripts/pretrain-from-github.mjs
+//   SOURCE=git node scripts/pretrain-from-github.mjs        # git only, skip gh
+//   BENCH_JSON=1 node scripts/pretrain-from-github.mjs      # machine-readable
+//   BENCH_NO_WRITE=1 node scripts/pretrain-from-github.mjs  # don't write a run JSON
+//
+// Repro from a fresh checkout:
+//   git clone https://github.com/ruvnet/ruflo && cd ruflo
+//   npm install && ( cd v3/@claude-flow/cli && npx tsc -b )
+//   node v3/@claude-flow/cli/scripts/pretrain-from-github.mjs
+
+import { execSync } from 'node:child_process';
+import { writeFileSync, mkdirSync } from 'node:fs';
+import { fileURLToPath } from 'node:url';
+import { dirname, join, resolve } from 'node:path';
+import { performance } from 'node:perf_hooks';
+
+const SCRIPT_DIR = dirname(fileURLToPath(import.meta.url));
+const CLI_ROOT = resolve(SCRIPT_DIR, '..');
+const RUFLO_ROOT = resolve(SCRIPT_DIR, '../../../..');
+const RUNS_DIR = join(RUFLO_ROOT, 'docs', 'benchmarks', 'runs');
+
+// ADR-084 cross-repo support — REPO_ROOT and GH_REPO env-overridable so the
+// same script can pretrain on agentdb / agentic-flow / any other repo for
+// generalisation testing. Defaults preserve ruflo behaviour.
+const REPO_ROOT = process.env.REPO_ROOT ? resolve(process.env.REPO_ROOT) : RUFLO_ROOT;
+const GH_REPO   = process.env.GH_REPO   || 'ruvnet/ruflo';
+
+const COMMITS = Number(process.env.COMMITS) || 50;
+const ISSUES  = Number(process.env.ISSUES)  || 30;
+const SOURCE  = process.env.SOURCE || 'all'; // 'all' | 'git' | 'issues'
+
+// ---------------------------------------------------------------------------
+// Harvesters
+// ---------------------------------------------------------------------------
+
+// ADR-078 outcome signal — classify each commit by whether it was reverted,
+// hotfix-followed, or stuck. Operates on the harvested-commits window plus a
+// wider lookahead window for revert/hotfix detection.
+//
+// Verdicts emitted:
+//   success — landed cleanly, no later commit reverted or fixed it
+//   reverted — a later commit subject starts with `Revert "<this subject>"`
+//   hotfixed — a later commit (within HOTFIX_WINDOW_COMMITS) shares >=50%
+//              of the same touched files AND subject contains fix|hotfix|patch
+//
+// The "later" direction is git-log order (newest first → we look at older
+// indices in the lookahead, which are NEWER commits chronologically).
+const HOTFIX_WINDOW_COMMITS = Number(process.env.HOTFIX_WINDOW_COMMITS) || 20;
+const HOTFIX_FILE_OVERLAP = Number(process.env.HOTFIX_FILE_OVERLAP) || 0.5;
+const HOTFIX_KEYWORDS = /\b(fix|hotfix|patch|revert|bugfix|fixup)\b/i;
+
+function harvestCommits(n) {
+  if (SOURCE === 'issues') return [];
+  const fmt = '%H%x00%s%x00%b%x01';
+  // Pull a wider window so we have lookahead for revert/hotfix detection
+  // without changing the trained set size n.
+  const lookahead = HOTFIX_WINDOW_COMMITS;
+  const raw = execSync(
+    `git log --pretty=format:'${fmt}' -n ${n + lookahead} 2>/dev/null`,
+    { cwd: REPO_ROOT, encoding: 'utf-8', maxBuffer: 64 * 1024 * 1024 },
+  );
+
+  // Parse all blocks (window + lookahead).
+  const all = [];
+  for (const block of raw.split('\x01')) {
+    if (!block.trim()) continue;
+    const [sha, subject, body] = block.split('\x00');
+    if (!sha || !subject) continue;
+    all.push({ sha, subject: subject.trim(), body: (body || '').trim() });
+  }
+
+  // For each commit in the trained slice, get its touched files.
+  const filesCache = new Map();
+  const filesOf = (sha) => {
+    if (filesCache.has(sha)) return filesCache.get(sha);
+    try {
+      const out = execSync(
+        `git show --pretty=format: --name-only ${sha} 2>/dev/null`,
+        { cwd: REPO_ROOT, encoding: 'utf-8', maxBuffer: 8 * 1024 * 1024 },
+      ).trim().split('\n').filter(Boolean);
+      filesCache.set(sha, new Set(out));
+      return filesCache.get(sha);
+    } catch {
+      filesCache.set(sha, new Set());
+      return filesCache.get(sha);
+    }
+  };
+
+  // Build a revert-target map: any commit whose subject starts with
+  // `Revert "<X>"` flags X as reverted.
+  const revertedSubjects = new Set();
+  for (const c of all) {
+    const m = c.subject.match(/^Revert\s+"(.+?)"/);
+    if (m) revertedSubjects.add(m[1].trim());
+  }
+
+  const trained = all.slice(0, n);
+  const entries = [];
+  for (let i = 0; i < trained.length; i++) {
+    const c = trained[i];
+    const myFiles = filesOf(c.sha);
+
+    let verdict = 'success';
+    let outcomeNote = null;
+
+    // Reverted? Check if any later (lower-index = newer) commit reverted us.
+    if (revertedSubjects.has(c.subject)) {
+      verdict = 'reverted';
+      outcomeNote = 'subject reverted by a later commit';
+    } else {
+      // Hotfixed? A later commit within HOTFIX_WINDOW_COMMITS shares files
+      // AND has fix/hotfix in its subject.
+      const start = Math.max(0, i - HOTFIX_WINDOW_COMMITS);
+      for (let j = start; j < i; j++) {
+        const later = trained[j];
+        if (!HOTFIX_KEYWORDS.test(later.subject)) continue;
+        const laterFiles = filesOf(later.sha);
+        if (laterFiles.size === 0 || myFiles.size === 0) continue;
+        let overlap = 0;
+        for (const f of laterFiles) if (myFiles.has(f)) overlap++;
+        // Use min() so a small targeted fix on a big change still triggers
+        // (semantic: "≥half of the smaller commit's files overlap").
+        const overlapFrac = overlap / Math.min(laterFiles.size, myFiles.size);
+        if (overlapFrac >= HOTFIX_FILE_OVERLAP) {
+          verdict = 'hotfixed';
+          outcomeNote = `${(overlapFrac * 100).toFixed(0)}% file overlap with later fix ${later.sha.slice(0, 8)}`;
+          break;
+        }
+      }
+    }
+
+    entries.push({
+      source: 'commit',
+      id: `commit-${c.sha.slice(0, 12)}`,
+      subject: c.subject,
+      body: c.body,
+      verdict,
+      outcomeNote,
+      content: `${c.subject}\n\n${c.body}`.slice(0, 8192),
+    });
+  }
+  return entries;
+}
+
+function harvestIssues(n) {
+  if (SOURCE === 'git') return [];
+  try {
+    const raw = execSync(
+      `gh issue list --repo ${GH_REPO} --state all --limit ${n} --json number,title,body,state,closedAt 2>/dev/null`,
+      { cwd: REPO_ROOT, encoding: 'utf-8', maxBuffer: 64 * 1024 * 1024 },
+    );
+    const items = JSON.parse(raw);
+    return items.map((i) => ({
+      source: 'issue',
+      id: `issue-${i.number}`,
+      subject: i.title,
+      body: (i.body || '').slice(0, 8192),
+      // closed = success outcome; open = partial (in-progress).
+      verdict: i.state === 'CLOSED' ? 'success' : 'partial',
+      content: `${i.title}\n\n${(i.body || '').slice(0, 8192)}`,
+    }));
+  } catch (err) {
+    console.error(`gh issue harvest skipped (${err.message?.slice(0, 60)}). Set SOURCE=git to silence.`);
+    return [];
+  }
+}
+
+// ---------------------------------------------------------------------------
+// Main
+// ---------------------------------------------------------------------------
+
+async function main() {
+  const intel = await import(join(CLI_ROOT, 'dist/src/memory/intelligence.js'));
+  const neural = await import(join(CLI_ROOT, 'dist/src/mcp-tools/neural-tools.js'));
+  const { distillAndSerialise } = await import(join(CLI_ROOT, 'dist/src/memory/structured-distill.js'));
+
+  // §1 — record the baseline (no clear; we want to learn ON TOP of whatever
+  // history the user already has).
+  const unified0 = await intel.getUnifiedLearningStats();
+  const before = {
+    trajectoriesRecorded: unified0.global.trajectoriesRecorded,
+    patternsLearned: unified0.global.patternsLearned,
+    signalsProcessed: unified0.global.signalsProcessed,
+    neuralPatternCount: unified0.neuralPatterns.patternCount,
+    memoryBridgeTotal: unified0.memoryBridge.totalEntries,
+  };
+
+  // §2 — harvest
+  const tHarvest0 = performance.now();
+  const commits = harvestCommits(COMMITS);
+  const issues = harvestIssues(ISSUES);
+  const items = [...commits, ...issues];
+  const harvestMs = performance.now() - tHarvest0;
+
+  if (!process.env.BENCH_JSON) {
+    console.log(`# Pretrain from ruflo GitHub history`);
+    console.log(`Harvested: ${commits.length} commits + ${issues.length} issues = ${items.length} trajectories (${harvestMs.toFixed(0)} ms)`);
+  }
+
+  // §3 — feed each item through the trajectory pipeline. The harvester
+  // emits one of: success | partial | reverted | hotfixed. We map this to
+  // the trajectory pipeline's binary verdict {success, partial} since the
+  // pipeline doesn't accept arbitrary strings — but we preserve the original
+  // outcome in metadata + the summary's verdictMix so the signal isn't lost.
+  const verdictToPipeline = (v) => {
+    if (v === 'success') return 'success';
+    if (v === 'partial') return 'partial';
+    if (v === 'reverted') return 'partial';   // a revert is the strongest "this was wrong" signal we have
+    if (v === 'hotfixed') return 'partial';   // a same-files fix-followup is "needs adjustment"
+    return 'success';
+  };
+  const verdictMix = { success: 0, partial: 0, reverted: 0, hotfixed: 0 };
+  const tFeed0 = performance.now();
+  let trained = 0;
+  let failed = 0;
+  const failures = [];
+  for (const item of items) {
+    try {
+      const distilled = distillAndSerialise(item.content);
+      verdictMix[item.verdict] = (verdictMix[item.verdict] ?? 0) + 1;
+      await intel.recordTrajectory(
+        [{
+          type: 'result',
+          content: distilled,
+          metadata: {
+            source: item.source,
+            id: item.id,
+            subject: item.subject.slice(0, 200),
+            outcomeVerdict: item.verdict,
+            outcomeNote: item.outcomeNote ?? null,
+          },
+          timestamp: Date.now(),
+        }],
+        verdictToPipeline(item.verdict),
+      );
+      trained++;
+    } catch (err) {
+      failed++;
+      if (failures.length < 5) failures.push({ id: item.id, error: String(err.message).slice(0, 120) });
+    }
+  }
+  const feedMs = performance.now() - tFeed0;
+  intel.flushIntelligenceStats();
+
+  // §4 — also seed the neural store directly from the same items so
+  // `neural_patterns list` reflects them (closes the "globalStats moved but
+  // neural_patterns didn't" consistency note from ADR-075).
+  const tSeed0 = performance.now();
+  const neuralItems = items.map((item) => ({
+    name: item.subject.slice(0, 200),
+    type: item.source === 'commit' ? 'history-commit' : 'history-issue',
+    content: distillAndSerialise(item.content),
+    metadata: { source: item.source, id: item.id, verdict: item.verdict },
+  }));
+  const seedResult = await neural.storeNeuralPatterns(neuralItems);
+  const seedMs = performance.now() - tSeed0;
+
+  // §5 — read the after-counters via the unified aggregator (this is what
+  // hooks_intelligence_unified-stats would return for a live caller).
+  const unified1 = await intel.getUnifiedLearningStats();
+  const after = {
+    trajectoriesRecorded: unified1.global.trajectoriesRecorded,
+    patternsLearned: unified1.global.patternsLearned,
+    signalsProcessed: unified1.global.signalsProcessed,
+    neuralPatternCount: unified1.neuralPatterns.patternCount,
+    memoryBridgeTotal: unified1.memoryBridge.totalEntries,
+  };
+
+  const deltas = Object.fromEntries(
+    Object.keys(after).map((k) => [k, after[k] - before[k]]),
+  );
+
+  const summary = {
+    runAt: new Date().toISOString(),
+    benchmark: 'pretrain-from-github',
+    source: SOURCE,
+    config: { COMMITS, ISSUES },
+    harvest: {
+      commits: commits.length,
+      issues: issues.length,
+      total: items.length,
+      harvestMs: Number(harvestMs.toFixed(2)),
+    },
+    feed: {
+      trained,
+      failed,
+      avgLatencyMs: items.length > 0 ? Number((feedMs / items.length).toFixed(2)) : 0,
+      totalMs: Number(feedMs.toFixed(2)),
+      sampleFailures: failures,
+      verdictMix,   // ADR-078 outcome signal — counts per harvested verdict
+    },
+    seedNeuralStore: {
+      stored: seedResult.stored,
+      total: seedResult.total,
+      seedMs: Number(seedMs.toFixed(2)),
+    },
+    before,
+    after,
+    deltas,
+    consistency: unified1.consistency,
+    passed:
+      trained === items.length &&
+      deltas.trajectoriesRecorded >= items.length &&
+      deltas.neuralPatternCount >= items.length,
+  };
+
+  if (process.env.BENCH_JSON) {
+    console.log(JSON.stringify(summary, null, 2));
+  } else {
+    console.log('');
+    console.log('| Counter | Before | After | Δ |');
+    console.log('|---|---:|---:|---:|');
+    for (const k of Object.keys(after)) {
+      console.log(`| ${k} | ${before[k]} | ${after[k]} | +${deltas[k]} |`);
+    }
+    console.log('');
+    console.log(`Trained via trajectory pipeline: ${trained}/${items.length}`);
+    console.log(`Failed: ${failed}`);
+    console.log(`Avg latency per trajectory: ${summary.feed.avgLatencyMs} ms`);
+    console.log(`Neural store seeded: ${seedResult.stored}/${seedResult.total}`);
+    console.log(`Verdict mix: success=${verdictMix.success} partial=${verdictMix.partial} reverted=${verdictMix.reverted} hotfixed=${verdictMix.hotfixed}`);
+    console.log(`Overall: ${summary.passed ? '✅ PASSED' : '⚠️  partial'}`);
+    if (unified1.consistency.notes.length > 0) {
+      console.log(`\nConsistency notes:`);
+      for (const n of unified1.consistency.notes) console.log(`  • ${n}`);
+    }
+  }
+
+  if (!process.env.BENCH_NO_WRITE) {
+    mkdirSync(RUNS_DIR, { recursive: true });
+    const stamp = summary.runAt.replace(/[:.]/g, '-');
+    writeFileSync(join(RUNS_DIR, `pretrain-from-github-${stamp}.json`), JSON.stringify(summary, null, 2));
+    writeFileSync(join(RUNS_DIR, 'pretrain-from-github-latest.json'), JSON.stringify(summary, null, 2));
+    if (!process.env.BENCH_JSON) console.log(`\nWrote ${join(RUNS_DIR, `pretrain-from-github-${stamp}.json`)}`);
+  }
+
+  // ONNX runtime keeps a worker thread alive — force exit so this can be used
+  // as a CI step or chained with other scripts.
+  process.exit(summary.passed ? 0 : 1);
+}
+
+main().catch((err) => { console.error(err); process.exit(1); });