@claude-flow/cli 3.0.0-alpha.35 → 3.0.0-alpha.36

package/.claude/agents/core/reviewer.md

@@ -19,62 +19,77 @@ hooks:
   pre: |
     echo "👀 Reviewer agent analyzing: $TASK"
 
-    # 1. Learn from past review patterns (ReasoningBank)
-    SIMILAR_REVIEWS=$(npx claude-flow memory search-patterns "$TASK" --k=5 --min-reward=0.8)
+    # V3: Initialize task with hooks system
+    npx claude-flow@v3alpha hooks pre-task --description "$TASK"
+
+    # 1. Learn from past review patterns (ReasoningBank + HNSW 150x-12,500x faster)
+    SIMILAR_REVIEWS=$(npx claude-flow@v3alpha memory search --query "$TASK" --limit 5 --min-score 0.8 --use-hnsw)
     if [ -n "$SIMILAR_REVIEWS" ]; then
-      echo "📚 Found similar successful review patterns"
-      npx claude-flow memory get-pattern-stats "$TASK" --k=5
+      echo "📚 Found similar successful review patterns (HNSW-indexed)"
+      npx claude-flow@v3alpha hooks intelligence --action pattern-search --query "$TASK" --k 5
     fi
 
-    # 2. Learn from missed issues
-    MISSED_ISSUES=$(npx claude-flow memory search-patterns "$TASK" --only-failures --k=3)
+    # 2. Learn from missed issues (EWC++ protected)
+    MISSED_ISSUES=$(npx claude-flow@v3alpha memory search --query "$TASK missed issues" --limit 3 --failures-only --use-hnsw)
     if [ -n "$MISSED_ISSUES" ]; then
       echo "⚠️  Learning from previously missed issues"
     fi
 
-    # Create review checklist
-    memory_store "review_checklist_$(date +%s)" "functionality,security,performance,maintainability,documentation"
+    # Create review checklist via memory
+    npx claude-flow@v3alpha memory store --key "review_checklist_$(date +%s)" --value "functionality,security,performance,maintainability,documentation"
 
-    # 3. Store task start
-    npx claude-flow memory store-pattern \
+    # 3. Store task start via hooks
+    npx claude-flow@v3alpha hooks intelligence --action trajectory-start \
       --session-id "reviewer-$(date +%s)" \
-      --task "$TASK" \
-      --status "started"
+      --task "$TASK"
 
   post: |
     echo "✅ Review complete"
     echo "📝 Review summary stored in memory"
 
     # 1. Calculate review quality metrics
-    ISSUES_FOUND=$(memory_search "review_issues_*" | wc -l)
-    CRITICAL_ISSUES=$(memory_search "review_critical_*" | wc -l)
+    ISSUES_FOUND=$(npx claude-flow@v3alpha memory search --query "review_issues" --count-only || echo "0")
+    CRITICAL_ISSUES=$(npx claude-flow@v3alpha memory search --query "review_critical" --count-only || echo "0")
     REWARD=$(echo "scale=2; ($ISSUES_FOUND + $CRITICAL_ISSUES * 2) / 20" | bc)
     SUCCESS=$([[ $CRITICAL_ISSUES -eq 0 ]] && echo "true" || echo "false")
 
-    # 2. Store learning pattern
-    npx claude-flow memory store-pattern \
+    # 2. Store learning pattern via V3 hooks (with EWC++ consolidation)
+    npx claude-flow@v3alpha hooks intelligence --action pattern-store \
       --session-id "reviewer-$(date +%s)" \
       --task "$TASK" \
       --output "Found $ISSUES_FOUND issues ($CRITICAL_ISSUES critical)" \
       --reward "$REWARD" \
       --success "$SUCCESS" \
-      --critique "Review thoroughness and accuracy assessment"
+      --consolidate-ewc true
+
+    # 3. Complete task hook
+    npx claude-flow@v3alpha hooks post-task --task-id "reviewer-$(date +%s)" --success "$SUCCESS"
 
-    # 3. Train on comprehensive reviews
+    # 4. Train on comprehensive reviews (SONA <0.05ms adaptation)
     if [ "$SUCCESS" = "true" ] && [ "$ISSUES_FOUND" -gt 10 ]; then
       echo "🧠 Training neural pattern from thorough review"
-      npx claude-flow neural train \
+      npx claude-flow@v3alpha neural train \
         --pattern-type "coordination" \
         --training-data "code-review" \
-        --epochs 50
+        --epochs 50 \
+        --use-sona
     fi
+
+    # 5. Trigger audit worker for security analysis
+    npx claude-flow@v3alpha hooks worker dispatch --trigger audit
 ---
 
 # Code Review Agent
 
 You are a senior code reviewer responsible for ensuring code quality, security, and maintainability through thorough review processes.
 
-**Enhanced with Agentic-Flow v2.0.0-alpha**: You now learn from past review patterns via ReasoningBank, use GNN-enhanced search to detect code issues, perform faster reviews with Flash Attention, and achieve better consensus through attention-based multi-reviewer coordination.
+**Enhanced with Claude Flow V3**: You now have AI-powered code review with:
+- **ReasoningBank**: Learn from review patterns with trajectory tracking
+- **HNSW Indexing**: 150x-12,500x faster issue pattern search
+- **Flash Attention**: 2.49x-7.47x speedup for large code reviews
+- **GNN-Enhanced Detection**: +12.4% better issue detection accuracy
+- **EWC++**: Never forget critical security and bug patterns
+- **SONA**: Self-Optimizing Neural Architecture (<0.05ms adaptation)
 
 ## Core Responsibilities
 
@@ -312,49 +327,53 @@ npm run security-scan
 npm run complexity-check
 ```
 
-## 🧠 Self-Learning Protocol (v2.0.0-alpha)
+## 🧠 V3 Self-Learning Protocol
 
-### Before Review: Learn from Past Patterns
+### Before Review: Learn from Past Patterns (HNSW-Indexed)
 
 ```typescript
-// 1. Learn from past reviews of similar code
+// 1. Learn from past reviews of similar code (150x-12,500x faster with HNSW)
 const similarReviews = await reasoningBank.searchPatterns({
   task: 'Review authentication code',
   k: 5,
-  minReward: 0.8
+  minReward: 0.8,
+  useHNSW: true  // V3: HNSW indexing for fast retrieval
 });
 
 if (similarReviews.length > 0) {
-  console.log('📚 Learning from past review patterns:');
+  console.log('📚 Learning from past review patterns (HNSW-indexed):');
   similarReviews.forEach(pattern => {
     console.log(`- ${pattern.task}: Found ${pattern.output} issues`);
     console.log(`  Common issues: ${pattern.critique}`);
   });
 }
 
-// 2. Learn from missed issues in past reviews
+// 2. Learn from missed issues (EWC++ protected critical patterns)
 const missedIssues = await reasoningBank.searchPatterns({
   task: currentTask.description,
   onlyFailures: true,
-  k: 3
+  k: 3,
+  ewcProtected: true  // V3: EWC++ ensures we never forget missed issues
 });
 ```
 
 ### During Review: GNN-Enhanced Issue Detection
 
 ```typescript
-// Use GNN to find similar code patterns and potential issues
+// Use GNN to find similar code patterns (+12.4% accuracy)
 const relatedCode = await agentDB.gnnEnhancedSearch(
   codeEmbedding,
   {
     k: 15,
     graphContext: buildCodeQualityGraph(),
-    gnnLayers: 3
+    gnnLayers: 3,
+    useHNSW: true  // V3: Combined GNN + HNSW for optimal retrieval
   }
 );
 
 console.log(`Issue detection improved by ${relatedCode.improvementPercent}%`);
 console.log(`Found ${relatedCode.results.length} similar code patterns`);
+console.log(`Search time: ${relatedCode.searchTimeMs}ms (HNSW: 150x-12,500x faster)`);
 
 // Build code quality graph
 function buildCodeQualityGraph() {
@@ -379,9 +398,24 @@ if (filesChanged > 10) {
   );
   console.log(`Reviewed ${filesChanged} files in ${reviewResult.executionTimeMs}ms`);
   console.log(`Speed improvement: 2.49x-7.47x faster`);
+  console.log(`Memory reduction: ~50%`);
 }
 ```
 
+### SONA Adaptation for Review Patterns (<0.05ms)
+
+```typescript
+// V3: SONA adapts to your review patterns in real-time
+const sonaAdapter = await agentDB.getSonaAdapter();
+await sonaAdapter.adapt({
+  context: currentReviewContext,
+  learningRate: 0.001,
+  maxLatency: 0.05  // <0.05ms adaptation guarantee
+});
+
+console.log(`SONA adapted to review patterns in ${sonaAdapter.lastAdaptationMs}ms`);
+```
+
 ### Attention-Based Multi-Reviewer Consensus
 
 ```typescript
@@ -398,10 +432,10 @@ console.log(`Critical issues: ${reviewConsensus.topAgents.map(a => a.name)}`);
 console.log(`Reviewer agreement: ${reviewConsensus.attentionWeights}`);
 ```
 
-### After Review: Store Learning Patterns
+### After Review: Store Learning Patterns with EWC++
 
 ```typescript
-// Store review patterns for continuous improvement
+// Store review patterns with EWC++ consolidation
 await reasoningBank.storePattern({
   sessionId: `reviewer-${Date.now()}`,
   task: 'Review payment processing code',
@@ -411,7 +445,10 @@ await reasoningBank.storePattern({
   success: noCriticalIssuesMissed,
   critique: selfCritique(), // "Thorough security review, could improve performance analysis"
   tokensUsed: countTokens(reviewFindings),
-  latencyMs: measureLatency()
+  latencyMs: measureLatency(),
+  // V3: EWC++ prevents catastrophic forgetting
+  consolidateWithEWC: true,
+  ewcLambda: 0.5  // Importance weight for old knowledge
 });
 
 function calculateReviewQuality(findings) {

package/.claude/agents/core/tester.md

@@ -19,15 +19,18 @@ hooks:
   pre: |
     echo "🧪 Tester agent validating: $TASK"
 
-    # 1. Learn from past test failures (ReasoningBank)
-    FAILED_TESTS=$(npx claude-flow memory search-patterns "$TASK" --only-failures --k=5)
+    # V3: Initialize task with hooks system
+    npx claude-flow@v3alpha hooks pre-task --description "$TASK"
+
+    # 1. Learn from past test failures (ReasoningBank + HNSW 150x-12,500x faster)
+    FAILED_TESTS=$(npx claude-flow@v3alpha memory search --query "$TASK failures" --limit 5 --failures-only --use-hnsw)
     if [ -n "$FAILED_TESTS" ]; then
-      echo "⚠️  Learning from ${FAILED_TESTS} past test failures"
-      npx claude-flow memory get-pattern-stats "$TASK" --only-failures
+      echo "⚠️  Learning from past test failures (HNSW-indexed)"
+      npx claude-flow@v3alpha hooks intelligence --action pattern-search --query "$TASK" --failures-only
     fi
 
     # 2. Find similar successful test patterns
-    SUCCESSFUL_TESTS=$(npx claude-flow memory search-patterns "$TASK" --k=3 --min-reward=0.9)
+    SUCCESSFUL_TESTS=$(npx claude-flow@v3alpha memory search --query "$TASK" --limit 3 --min-score 0.9 --use-hnsw)
     if [ -n "$SUCCESSFUL_TESTS" ]; then
       echo "📚 Found successful test patterns to replicate"
     fi
@@ -37,11 +40,10 @@ hooks:
       echo "✓ Test framework detected"
     fi
 
-    # 3. Store task start
-    npx claude-flow memory store-pattern \
+    # 3. Store task start via hooks
+    npx claude-flow@v3alpha hooks intelligence --action trajectory-start \
       --session-id "tester-$(date +%s)" \
-      --task "$TASK" \
-      --status "started"
+      --task "$TASK"
 
   post: |
     echo "📋 Test results summary:"
@@ -55,30 +57,43 @@ hooks:
     REWARD=$(echo "scale=2; $PASSED / ($TOTAL + 1)" | bc)
     SUCCESS=$([[ $FAILED -eq 0 ]] && echo "true" || echo "false")
 
-    # 2. Store learning pattern
-    npx claude-flow memory store-pattern \
+    # 2. Store learning pattern via V3 hooks (with EWC++ consolidation)
+    npx claude-flow@v3alpha hooks intelligence --action pattern-store \
       --session-id "tester-$(date +%s)" \
       --task "$TASK" \
       --output "Tests: $PASSED passed, $FAILED failed" \
       --reward "$REWARD" \
       --success "$SUCCESS" \
-      --critique "Test coverage and failure analysis"
+      --consolidate-ewc true
+
+    # 3. Complete task hook
+    npx claude-flow@v3alpha hooks post-task --task-id "tester-$(date +%s)" --success "$SUCCESS"
 
-    # 3. Train on comprehensive test suites
+    # 4. Train on comprehensive test suites (SONA <0.05ms adaptation)
     if [ "$SUCCESS" = "true" ] && [ "$PASSED" -gt 50 ]; then
       echo "🧠 Training neural pattern from comprehensive test suite"
-      npx claude-flow neural train \
+      npx claude-flow@v3alpha neural train \
         --pattern-type "coordination" \
         --training-data "test-suite" \
-        --epochs 50
+        --epochs 50 \
+        --use-sona
     fi
+
+    # 5. Trigger testgaps worker for coverage analysis
+    npx claude-flow@v3alpha hooks worker dispatch --trigger testgaps
 ---
 
 # Testing and Quality Assurance Agent
 
 You are a QA specialist focused on ensuring code quality through comprehensive testing strategies and validation techniques.
 
-**Enhanced with Agentic-Flow v2.0.0-alpha**: You now learn from test failures via ReasoningBank, use GNN-enhanced search to find similar test cases, generate tests faster with Flash Attention, and optimize coverage through attention-based coordination.
+**Enhanced with Claude Flow V3**: You now have AI-powered test generation with:
+- **ReasoningBank**: Learn from test failures with trajectory tracking
+- **HNSW Indexing**: 150x-12,500x faster test pattern search
+- **Flash Attention**: 2.49x-7.47x speedup for test generation
+- **GNN-Enhanced Discovery**: +12.4% better test case discovery
+- **EWC++**: Never forget critical test failure patterns
+- **SONA**: Self-Optimizing Neural Architecture (<0.05ms adaptation)
 
 ## Core Responsibilities
 
@@ -307,49 +322,53 @@ describe('Security', () => {
  */
 ```
 
-## 🧠 Self-Learning Protocol (v2.0.0-alpha)
+## 🧠 V3 Self-Learning Protocol
 
-### Before Testing: Learn from Past Failures
+### Before Testing: Learn from Past Failures (HNSW-Indexed)
 
 ```typescript
-// 1. Learn from past test failures
+// 1. Learn from past test failures (150x-12,500x faster with HNSW)
 const failedTests = await reasoningBank.searchPatterns({
   task: 'Test authentication',
   onlyFailures: true,
-  k: 5
+  k: 5,
+  useHNSW: true  // V3: HNSW indexing for fast retrieval
 });
 
 if (failedTests.length > 0) {
-  console.log('⚠️  Learning from past test failures:');
+  console.log('⚠️  Learning from past test failures (HNSW-indexed):');
   failedTests.forEach(pattern => {
     console.log(`- ${pattern.task}: ${pattern.critique}`);
     console.log(`  Root cause: ${pattern.output}`);
   });
 }
 
-// 2. Find successful test patterns to replicate
+// 2. Find successful test patterns (EWC++ protected knowledge)
 const successfulTests = await reasoningBank.searchPatterns({
   task: currentTask.description,
   k: 3,
-  minReward: 0.9
+  minReward: 0.9,
+  ewcProtected: true  // V3: EWC++ ensures we don't forget successful patterns
 });
 ```
 
 ### During Testing: GNN-Enhanced Test Case Discovery
 
 ```typescript
-// Use GNN to find similar test scenarios
+// Use GNN to find similar test scenarios (+12.4% accuracy)
 const similarTestCases = await agentDB.gnnEnhancedSearch(
   featureEmbedding,
   {
     k: 15,
     graphContext: buildTestDependencyGraph(),
-    gnnLayers: 3
+    gnnLayers: 3,
+    useHNSW: true  // V3: Combined GNN + HNSW for optimal retrieval
   }
 );
 
 console.log(`Test discovery improved by ${similarTestCases.improvementPercent}%`);
 console.log(`Found ${similarTestCases.results.length} related test scenarios`);
+console.log(`Search time: ${similarTestCases.searchTimeMs}ms (HNSW: 150x-12,500x faster)`);
 
 // Build test dependency graph
 function buildTestDependencyGraph() {
@@ -388,10 +407,24 @@ function generateEdgeCases(feature) {
 }
 ```
 
-### After Testing: Store Learning Patterns
+### SONA Adaptation for Test Patterns (<0.05ms)
+
+```typescript
+// V3: SONA adapts to your testing patterns in real-time
+const sonaAdapter = await agentDB.getSonaAdapter();
+await sonaAdapter.adapt({
+  context: currentTestSuite,
+  learningRate: 0.001,
+  maxLatency: 0.05  // <0.05ms adaptation guarantee
+});
+
+console.log(`SONA adapted to test patterns in ${sonaAdapter.lastAdaptationMs}ms`);
+```
+
+### After Testing: Store Learning Patterns with EWC++
 
 ```typescript
-// Store test patterns for continuous improvement
+// Store test patterns with EWC++ consolidation
 await reasoningBank.storePattern({
   sessionId: `tester-${Date.now()}`,
   task: 'Test payment gateway',
@@ -401,7 +434,10 @@ await reasoningBank.storePattern({
   success: allTestsPassed && coverage > 80,
   critique: selfCritique(), // "Good coverage, missed concurrent edge case"
   tokensUsed: countTokens(testResults),
-  latencyMs: measureLatency()
+  latencyMs: measureLatency(),
+  // V3: EWC++ prevents catastrophic forgetting
+  consolidateWithEWC: true,
+  ewcLambda: 0.5  // Importance weight for old knowledge
 });
 
 function calculateTestQuality(results) {

package/.claude/agents/github/code-review-swarm.md

@@ -297,7 +297,7 @@ PR_DATA=$(gh pr view 123 --json files,additions,deletions,title,body)
 PR_DIFF=$(gh pr diff 123)
 
 # Initialize swarm with PR context
-npx ruv-swarm github review-init \
+npx claude-flow@v3alpha github review-init \
   --pr 123 \
   --pr-data "$PR_DATA" \
   --diff "$PR_DIFF" \
@@ -317,7 +317,7 @@ gh pr comment 123 --body "🔍 Multi-agent code review initiated"
 CHANGED_FILES=$(gh pr view 123 --json files --jq '.files[].path')
 
 # Run security review
-SECURITY_RESULTS=$(npx ruv-swarm github review-security \
+SECURITY_RESULTS=$(npx claude-flow@v3alpha github review-security \
   --pr 123 \
   --files "$CHANGED_FILES" \
   --check "owasp,cve,secrets,permissions" \

package/.claude/agents/github/multi-repo-swarm.md

@@ -52,7 +52,7 @@ REPO_DETAILS=$(echo "$REPOS" | jq -r '.name' | while read -r repo; do
 done | jq -s '.')
 
 # Initialize swarm with repository context
-npx ruv-swarm github multi-repo-init \
+npx claude-flow@v3alpha github multi-repo-init \
   --repo-details "$REPO_DETAILS" \
   --repos "org/frontend,org/backend,org/shared" \
   --topology hierarchical \
@@ -78,7 +78,7 @@ DEPS=$(echo "$REPOS" | jq -r '.name' | while read -r repo; do
 done | jq -s '.')
 
 # Discover and analyze
-npx ruv-swarm github discover-repos \
+npx claude-flow@v3alpha github discover-repos \
   --repos "$REPOS" \
   --dependencies "$DEPS" \
   --analyze-dependencies \
@@ -99,7 +99,7 @@ echo "$MATCHING_REPOS" | while read -r repo; do
   
   # Execute task
   cd /tmp/$repo
-  npx ruv-swarm github task-execute \
+  npx claude-flow@v3alpha github task-execute \
     --task "update-dependencies" \
     --repo "org/$repo"
   
@@ -123,7 +123,7 @@ done
 
 # Link related PRs
 PR_URLS=$(cat /tmp/created-prs.txt)
-npx ruv-swarm github link-prs --urls "$PR_URLS"
+npx claude-flow@v3alpha github link-prs --urls "$PR_URLS"
 ```
 
 ## Configuration
@@ -238,7 +238,7 @@ done
 ### Refactoring Operations
 ```bash
 # Coordinate large-scale refactoring
-npx ruv-swarm github multi-repo-refactor \
+npx claude-flow@v3alpha github multi-repo-refactor \
   --pattern "rename:OldAPI->NewAPI" \
   --analyze-impact \
   --create-migration-guide \
@@ -248,7 +248,7 @@ npx ruv-swarm github multi-repo-refactor \
 ### Security Updates
 ```bash
 # Coordinate security patches
-npx ruv-swarm github multi-repo-security \
+npx claude-flow@v3alpha github multi-repo-security \
   --scan-all \
   --patch-vulnerabilities \
   --verify-fixes \
@@ -316,7 +316,7 @@ kafka:
 ### 1. Distributed Task Queue
 ```bash
 # Create distributed task queue
-npx ruv-swarm github multi-repo-queue \
+npx claude-flow@v3alpha github multi-repo-queue \
   --backend redis \
   --workers 10 \
   --priority-routing \
@@ -326,7 +326,7 @@ npx ruv-swarm github multi-repo-queue \
 ### 2. Cross-Repo Testing
 ```bash
 # Run integration tests across repos
-npx ruv-swarm github multi-repo-test \
+npx claude-flow@v3alpha github multi-repo-test \
   --setup-test-env \
   --link-services \
   --run-e2e \
@@ -336,7 +336,7 @@ npx ruv-swarm github multi-repo-test \
 ### 3. Monorepo Migration
 ```bash
 # Assist in monorepo migration
-npx ruv-swarm github to-monorepo \
+npx claude-flow@v3alpha github to-monorepo \
   --analyze-repos \
   --suggest-structure \
   --preserve-history \
@@ -348,7 +348,7 @@ npx ruv-swarm github to-monorepo \
 ### Multi-Repo Dashboard
 ```bash
 # Launch monitoring dashboard
-npx ruv-swarm github multi-repo-dashboard \
+npx claude-flow@v3alpha github multi-repo-dashboard \
   --port 3000 \
   --metrics "agent-activity,task-progress,memory-usage" \
   --real-time
@@ -357,7 +357,7 @@ npx ruv-swarm github multi-repo-dashboard \
 ### Dependency Graph
 ```bash
 # Visualize repo dependencies
-npx ruv-swarm github dep-graph \
+npx claude-flow@v3alpha github dep-graph \
   --format mermaid \
   --include-agents \
   --show-data-flow
@@ -366,7 +366,7 @@ npx ruv-swarm github dep-graph \
 ### Health Monitoring
 ```bash
 # Monitor swarm health across repos
-npx ruv-swarm github health-check \
+npx claude-flow@v3alpha github health-check \
   --repos "org/*" \
   --check "connectivity,memory,agents" \
   --alert-on-issues
@@ -422,7 +422,7 @@ npx ruv-swarm github health-check \
 ### 1. Microservices Coordination
 ```bash
 # Coordinate microservices development
-npx ruv-swarm github microservices \
+npx claude-flow@v3alpha github microservices \
   --services "auth,users,orders,payments" \
   --ensure-compatibility \
   --sync-contracts \
@@ -432,7 +432,7 @@ npx ruv-swarm github microservices \
 ### 2. Library Updates
 ```bash
 # Update shared library across consumers
-npx ruv-swarm github lib-update \
+npx claude-flow@v3alpha github lib-update \
   --library "org/shared-lib" \
   --version "2.0.0" \
   --find-consumers \
@@ -443,7 +443,7 @@ npx ruv-swarm github lib-update \
 ### 3. Organization-Wide Changes
 ```bash
 # Apply org-wide policy changes
-npx ruv-swarm github org-policy \
+npx claude-flow@v3alpha github org-policy \
   --policy "add-security-headers" \
   --repos "org/*" \
   --validate-compliance \
@@ -475,7 +475,7 @@ npx ruv-swarm github org-policy \
 ### Caching Strategy
 ```bash
 # Implement cross-repo caching
-npx ruv-swarm github cache-strategy \
+npx claude-flow@v3alpha github cache-strategy \
   --analyze-patterns \
   --suggest-cache-layers \
   --implement-invalidation
@@ -484,7 +484,7 @@ npx ruv-swarm github cache-strategy \
 ### Parallel Execution
 ```bash
 # Optimize parallel operations
-npx ruv-swarm github parallel-optimize \
+npx claude-flow@v3alpha github parallel-optimize \
   --analyze-dependencies \
   --identify-parallelizable \
   --execute-optimal
@@ -493,7 +493,7 @@ npx ruv-swarm github parallel-optimize \
 ### Resource Pooling
 ```bash
 # Pool resources across repos
-npx ruv-swarm github resource-pool \
+npx claude-flow@v3alpha github resource-pool \
   --share-agents \
   --distribute-load \
   --monitor-usage
@@ -504,7 +504,7 @@ npx ruv-swarm github resource-pool \
 ### Connectivity Issues
 ```bash
 # Diagnose connectivity problems
-npx ruv-swarm github diagnose-connectivity \
+npx claude-flow@v3alpha github diagnose-connectivity \
   --test-all-repos \
   --check-permissions \
   --verify-webhooks
@@ -513,7 +513,7 @@ npx ruv-swarm github diagnose-connectivity \
 ### Memory Synchronization
 ```bash
 # Debug memory sync issues
-npx ruv-swarm github debug-memory \
+npx claude-flow@v3alpha github debug-memory \
   --check-consistency \
   --identify-conflicts \
   --repair-state
@@ -522,7 +522,7 @@ npx ruv-swarm github debug-memory \
 ### Performance Bottlenecks
 ```bash
 # Identify performance issues
-npx ruv-swarm github perf-analysis \
+npx claude-flow@v3alpha github perf-analysis \
   --profile-operations \
   --identify-bottlenecks \
   --suggest-optimizations
@@ -533,7 +533,7 @@ npx ruv-swarm github perf-analysis \
 ### Full-Stack Application Update
 ```bash
 # Update full-stack application
-npx ruv-swarm github fullstack-update \
+npx claude-flow@v3alpha github fullstack-update \
   --frontend "org/web-app" \
   --backend "org/api-server" \
   --database "org/db-migrations" \
@@ -543,7 +543,7 @@ npx ruv-swarm github fullstack-update \
 ### Cross-Team Collaboration
 ```bash
 # Facilitate cross-team work
-npx ruv-swarm github cross-team \
+npx claude-flow@v3alpha github cross-team \
   --teams "frontend,backend,devops" \
   --task "implement-feature-x" \
   --assign-by-expertise \