@cirrobio/api-client 0.9.0 → 0.9.1

package/dist/models/DatasetCondition.js

@@ -0,0 +1,54 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DatasetConditionToJSON = exports.DatasetConditionFromJSONTyped = exports.DatasetConditionFromJSON = exports.instanceOfDatasetCondition = void 0;
+const DatasetConditionField_1 = require("./DatasetConditionField");
+/**
+ * Check if a given object implements the DatasetCondition interface.
+ */
+function instanceOfDatasetCondition(value) {
+    let isInstance = true;
+    isInstance = isInstance && "field" in value;
+    isInstance = isInstance && "value" in value;
+    return isInstance;
+}
+exports.instanceOfDatasetCondition = instanceOfDatasetCondition;
+function DatasetConditionFromJSON(json) {
+    return DatasetConditionFromJSONTyped(json, false);
+}
+exports.DatasetConditionFromJSON = DatasetConditionFromJSON;
+function DatasetConditionFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'field': (0, DatasetConditionField_1.DatasetConditionFieldFromJSON)(json['field']),
+        'value': json['value'],
+    };
+}
+exports.DatasetConditionFromJSONTyped = DatasetConditionFromJSONTyped;
+function DatasetConditionToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'field': (0, DatasetConditionField_1.DatasetConditionFieldToJSON)(value.field),
+        'value': value.value,
+    };
+}
+exports.DatasetConditionToJSON = DatasetConditionToJSON;

package/dist/models/DatasetConditionField.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @enum {string}
+ */
+export declare enum DatasetConditionField {
+    DatasetId = "DATASET_ID",
+    Tag = "TAG",
+    ProcessId = "PROCESS_ID",
+    CreatedBy = "CREATED_BY"
+}
+export declare function DatasetConditionFieldFromJSON(json: any): DatasetConditionField;
+export declare function DatasetConditionFieldFromJSONTyped(json: any, ignoreDiscriminator: boolean): DatasetConditionField;
+export declare function DatasetConditionFieldToJSON(value?: DatasetConditionField | null): any;

package/dist/models/DatasetConditionField.js

@@ -0,0 +1,40 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DatasetConditionFieldToJSON = exports.DatasetConditionFieldFromJSONTyped = exports.DatasetConditionFieldFromJSON = exports.DatasetConditionField = void 0;
+/**
+ *
+ * @export
+ * @enum {string}
+ */
+var DatasetConditionField;
+(function (DatasetConditionField) {
+    DatasetConditionField["DatasetId"] = "DATASET_ID";
+    DatasetConditionField["Tag"] = "TAG";
+    DatasetConditionField["ProcessId"] = "PROCESS_ID";
+    DatasetConditionField["CreatedBy"] = "CREATED_BY";
+})(DatasetConditionField = exports.DatasetConditionField || (exports.DatasetConditionField = {}));
+function DatasetConditionFieldFromJSON(json) {
+    return DatasetConditionFieldFromJSONTyped(json, false);
+}
+exports.DatasetConditionFieldFromJSON = DatasetConditionFieldFromJSON;
+function DatasetConditionFieldFromJSONTyped(json, ignoreDiscriminator) {
+    return json;
+}
+exports.DatasetConditionFieldFromJSONTyped = DatasetConditionFieldFromJSONTyped;
+function DatasetConditionFieldToJSON(value) {
+    return value;
+}
+exports.DatasetConditionFieldToJSON = DatasetConditionFieldToJSON;

package/dist/models/DatasetDetail.d.ts

@@ -0,0 +1,154 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+import type { NamedItem } from './NamedItem';
+import type { Status } from './Status';
+import type { Tag } from './Tag';
+/**
+ *
+ * @export
+ * @interface DatasetDetail
+ */
+export interface DatasetDetail {
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    id: string;
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    name: string;
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    description: string;
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    s3: string;
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    processId: string;
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    projectId: string;
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof DatasetDetail
+     */
+    sourceDatasetIds: Array<string>;
+    /**
+     *
+     * @type {Array<NamedItem>}
+     * @memberof DatasetDetail
+     */
+    sourceDatasets: Array<NamedItem>;
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof DatasetDetail
+     */
+    sourceSampleIds: Array<string>;
+    /**
+     * Keys are sampleIds, and the lists are file paths to include.
+     * @type {{ [key: string]: Array<string>; }}
+     * @memberof DatasetDetail
+     */
+    sourceSampleFilesMap: {
+        [key: string]: Array<string>;
+    };
+    /**
+     *
+     * @type {Status}
+     * @memberof DatasetDetail
+     */
+    status: Status;
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    statusMessage: string;
+    /**
+     *
+     * @type {Array<Tag>}
+     * @memberof DatasetDetail
+     */
+    tags: Array<Tag>;
+    /**
+     *
+     * @type {{ [key: string]: any; }}
+     * @memberof DatasetDetail
+     */
+    params: {
+        [key: string]: any;
+    };
+    /**
+     *
+     * @type {{ [key: string]: any; }}
+     * @memberof DatasetDetail
+     */
+    info: {
+        [key: string]: any;
+    };
+    /**
+     *
+     * @type {NamedItem}
+     * @memberof DatasetDetail
+     */
+    share?: NamedItem | null;
+    /**
+     *
+     * @type {boolean}
+     * @memberof DatasetDetail
+     */
+    isViewRestricted: boolean;
+    /**
+     *
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    createdBy: string;
+    /**
+     *
+     * @type {Date}
+     * @memberof DatasetDetail
+     */
+    createdAt: Date;
+    /**
+     *
+     * @type {Date}
+     * @memberof DatasetDetail
+     */
+    updatedAt: Date;
+}
+/**
+ * Check if a given object implements the DatasetDetail interface.
+ */
+export declare function instanceOfDatasetDetail(value: object): boolean;
+export declare function DatasetDetailFromJSON(json: any): DatasetDetail;
+export declare function DatasetDetailFromJSONTyped(json: any, ignoreDiscriminator: boolean): DatasetDetail;
+export declare function DatasetDetailToJSON(value?: DatasetDetail | null): any;

package/dist/models/DatasetDetail.js

@@ -0,0 +1,110 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DatasetDetailToJSON = exports.DatasetDetailFromJSONTyped = exports.DatasetDetailFromJSON = exports.instanceOfDatasetDetail = void 0;
+const runtime_1 = require("../runtime");
+const NamedItem_1 = require("./NamedItem");
+const Status_1 = require("./Status");
+const Tag_1 = require("./Tag");
+/**
+ * Check if a given object implements the DatasetDetail interface.
+ */
+function instanceOfDatasetDetail(value) {
+    let isInstance = true;
+    isInstance = isInstance && "id" in value;
+    isInstance = isInstance && "name" in value;
+    isInstance = isInstance && "description" in value;
+    isInstance = isInstance && "s3" in value;
+    isInstance = isInstance && "processId" in value;
+    isInstance = isInstance && "projectId" in value;
+    isInstance = isInstance && "sourceDatasetIds" in value;
+    isInstance = isInstance && "sourceDatasets" in value;
+    isInstance = isInstance && "sourceSampleIds" in value;
+    isInstance = isInstance && "sourceSampleFilesMap" in value;
+    isInstance = isInstance && "status" in value;
+    isInstance = isInstance && "statusMessage" in value;
+    isInstance = isInstance && "tags" in value;
+    isInstance = isInstance && "params" in value;
+    isInstance = isInstance && "info" in value;
+    isInstance = isInstance && "isViewRestricted" in value;
+    isInstance = isInstance && "createdBy" in value;
+    isInstance = isInstance && "createdAt" in value;
+    isInstance = isInstance && "updatedAt" in value;
+    return isInstance;
+}
+exports.instanceOfDatasetDetail = instanceOfDatasetDetail;
+function DatasetDetailFromJSON(json) {
+    return DatasetDetailFromJSONTyped(json, false);
+}
+exports.DatasetDetailFromJSON = DatasetDetailFromJSON;
+function DatasetDetailFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'id': json['id'],
+        'name': json['name'],
+        'description': json['description'],
+        's3': json['s3'],
+        'processId': json['processId'],
+        'projectId': json['projectId'],
+        'sourceDatasetIds': json['sourceDatasetIds'],
+        'sourceDatasets': (json['sourceDatasets'].map(NamedItem_1.NamedItemFromJSON)),
+        'sourceSampleIds': json['sourceSampleIds'],
+        'sourceSampleFilesMap': json['sourceSampleFilesMap'],
+        'status': (0, Status_1.StatusFromJSON)(json['status']),
+        'statusMessage': json['statusMessage'],
+        'tags': (json['tags'].map(Tag_1.TagFromJSON)),
+        'params': json['params'],
+        'info': json['info'],
+        'share': !(0, runtime_1.exists)(json, 'share') ? undefined : (0, NamedItem_1.NamedItemFromJSON)(json['share']),
+        'isViewRestricted': json['isViewRestricted'],
+        'createdBy': json['createdBy'],
+        'createdAt': (new Date(json['createdAt'])),
+        'updatedAt': (new Date(json['updatedAt'])),
+    };
+}
+exports.DatasetDetailFromJSONTyped = DatasetDetailFromJSONTyped;
+function DatasetDetailToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'id': value.id,
+        'name': value.name,
+        'description': value.description,
+        's3': value.s3,
+        'processId': value.processId,
+        'projectId': value.projectId,
+        'sourceDatasetIds': value.sourceDatasetIds,
+        'sourceDatasets': (value.sourceDatasets.map(NamedItem_1.NamedItemToJSON)),
+        'sourceSampleIds': value.sourceSampleIds,
+        'sourceSampleFilesMap': value.sourceSampleFilesMap,
+        'status': (0, Status_1.StatusToJSON)(value.status),
+        'statusMessage': value.statusMessage,
+        'tags': (value.tags.map(Tag_1.TagToJSON)),
+        'params': value.params,
+        'info': value.info,
+        'share': (0, NamedItem_1.NamedItemToJSON)(value.share),
+        'isViewRestricted': value.isViewRestricted,
+        'createdBy': value.createdBy,
+        'createdAt': (value.createdAt.toISOString()),
+        'updatedAt': (value.updatedAt.toISOString()),
+    };
+}
+exports.DatasetDetailToJSON = DatasetDetailToJSON;

package/dist/models/DatasetViz.d.ts

@@ -0,0 +1,55 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface DatasetViz
+ */
+export interface DatasetViz {
+    /**
+     * Path to viz configuration, if applicable
+     * @type {string}
+     * @memberof DatasetViz
+     */
+    path?: string;
+    /**
+     * Name of viz
+     * @type {string}
+     * @memberof DatasetViz
+     */
+    name?: string;
+    /**
+     * Description of viz
+     * @type {string}
+     * @memberof DatasetViz
+     */
+    desc?: string;
+    /**
+     * Type of viz
+     * @type {string}
+     * @memberof DatasetViz
+     */
+    type?: string;
+    /**
+     * Config or path to config used to render viz
+     * @type {any}
+     * @memberof DatasetViz
+     */
+    config?: any | null;
+}
+/**
+ * Check if a given object implements the DatasetViz interface.
+ */
+export declare function instanceOfDatasetViz(value: object): boolean;
+export declare function DatasetVizFromJSON(json: any): DatasetViz;
+export declare function DatasetVizFromJSONTyped(json: any, ignoreDiscriminator: boolean): DatasetViz;
+export declare function DatasetVizToJSON(value?: DatasetViz | null): any;

package/dist/models/DatasetViz.js

@@ -0,0 +1,58 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DatasetVizToJSON = exports.DatasetVizFromJSONTyped = exports.DatasetVizFromJSON = exports.instanceOfDatasetViz = void 0;
+const runtime_1 = require("../runtime");
+/**
+ * Check if a given object implements the DatasetViz interface.
+ */
+function instanceOfDatasetViz(value) {
+    let isInstance = true;
+    return isInstance;
+}
+exports.instanceOfDatasetViz = instanceOfDatasetViz;
+function DatasetVizFromJSON(json) {
+    return DatasetVizFromJSONTyped(json, false);
+}
+exports.DatasetVizFromJSON = DatasetVizFromJSON;
+function DatasetVizFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'path': !(0, runtime_1.exists)(json, 'path') ? undefined : json['path'],
+        'name': !(0, runtime_1.exists)(json, 'name') ? undefined : json['name'],
+        'desc': !(0, runtime_1.exists)(json, 'desc') ? undefined : json['desc'],
+        'type': !(0, runtime_1.exists)(json, 'type') ? undefined : json['type'],
+        'config': !(0, runtime_1.exists)(json, 'config') ? undefined : json['config'],
+    };
+}
+exports.DatasetVizFromJSONTyped = DatasetVizFromJSONTyped;
+function DatasetVizToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'path': value.path,
+        'name': value.name,
+        'desc': value.desc,
+        'type': value.type,
+        'config': value.config,
+    };
+}
+exports.DatasetVizToJSON = DatasetVizToJSON;

package/dist/models/EnvironmentType.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ * The type of compute environment
+ * @export
+ * @enum {string}
+ */
+export declare enum EnvironmentType {
+    None = "NONE",
+    LocalAgent = "LOCAL_AGENT",
+    AwsBatch = "AWS_BATCH",
+    AwsOmics = "AWS_OMICS"
+}
+export declare function EnvironmentTypeFromJSON(json: any): EnvironmentType;
+export declare function EnvironmentTypeFromJSONTyped(json: any, ignoreDiscriminator: boolean): EnvironmentType;
+export declare function EnvironmentTypeToJSON(value?: EnvironmentType | null): any;

package/dist/models/EnvironmentType.js

@@ -0,0 +1,40 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.EnvironmentTypeToJSON = exports.EnvironmentTypeFromJSONTyped = exports.EnvironmentTypeFromJSON = exports.EnvironmentType = void 0;
+/**
+ * The type of compute environment
+ * @export
+ * @enum {string}
+ */
+var EnvironmentType;
+(function (EnvironmentType) {
+    EnvironmentType["None"] = "NONE";
+    EnvironmentType["LocalAgent"] = "LOCAL_AGENT";
+    EnvironmentType["AwsBatch"] = "AWS_BATCH";
+    EnvironmentType["AwsOmics"] = "AWS_OMICS";
+})(EnvironmentType = exports.EnvironmentType || (exports.EnvironmentType = {}));
+function EnvironmentTypeFromJSON(json) {
+    return EnvironmentTypeFromJSONTyped(json, false);
+}
+exports.EnvironmentTypeFromJSON = EnvironmentTypeFromJSON;
+function EnvironmentTypeFromJSONTyped(json, ignoreDiscriminator) {
+    return json;
+}
+exports.EnvironmentTypeFromJSONTyped = EnvironmentTypeFromJSONTyped;
+function EnvironmentTypeToJSON(value) {
+    return value;
+}
+exports.EnvironmentTypeToJSON = EnvironmentTypeToJSON;

package/dist/models/ErrorMessage.d.ts

@@ -0,0 +1,31 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface ErrorMessage
+ */
+export interface ErrorMessage {
+    /**
+     *
+     * @type {string}
+     * @memberof ErrorMessage
+     */
+    message: string;
+}
+/**
+ * Check if a given object implements the ErrorMessage interface.
+ */
+export declare function instanceOfErrorMessage(value: object): boolean;
+export declare function ErrorMessageFromJSON(json: any): ErrorMessage;
+export declare function ErrorMessageFromJSONTyped(json: any, ignoreDiscriminator: boolean): ErrorMessage;
+export declare function ErrorMessageToJSON(value?: ErrorMessage | null): any;

package/dist/models/ErrorMessage.js

@@ -0,0 +1,50 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ErrorMessageToJSON = exports.ErrorMessageFromJSONTyped = exports.ErrorMessageFromJSON = exports.instanceOfErrorMessage = void 0;
+/**
+ * Check if a given object implements the ErrorMessage interface.
+ */
+function instanceOfErrorMessage(value) {
+    let isInstance = true;
+    isInstance = isInstance && "message" in value;
+    return isInstance;
+}
+exports.instanceOfErrorMessage = instanceOfErrorMessage;
+function ErrorMessageFromJSON(json) {
+    return ErrorMessageFromJSONTyped(json, false);
+}
+exports.ErrorMessageFromJSON = ErrorMessageFromJSON;
+function ErrorMessageFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'message': json['message'],
+    };
+}
+exports.ErrorMessageFromJSONTyped = ErrorMessageFromJSONTyped;
+function ErrorMessageToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'message': value.message,
+    };
+}
+exports.ErrorMessageToJSON = ErrorMessageToJSON;

package/dist/models/Executor.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ * How the workflow is executed
+ * @export
+ * @enum {string}
+ */
+export declare enum Executor {
+    Ingest = "INGEST",
+    Nextflow = "NEXTFLOW",
+    Cromwell = "CROMWELL",
+    OmicsReady2Run = "OMICS_READY2RUN"
+}
+export declare function ExecutorFromJSON(json: any): Executor;
+export declare function ExecutorFromJSONTyped(json: any, ignoreDiscriminator: boolean): Executor;
+export declare function ExecutorToJSON(value?: Executor | null): any;