@cirrobio/api-client 0.12.2 → 0.12.4

package/README.md

@@ -36,7 +36,7 @@ navigate to the folder of your consuming project and run one of the following co
 _published:_
 
 ```
-npm install @cirrobio/api-client@1.0.0 --save
+npm install @cirrobio/api-client@0.12.4 --save
 ```
 
 _unPublished (not recommended):_

package/dist/esm/models/DatasetDetail.d.ts

@@ -132,6 +132,12 @@ export interface DatasetDetail {
      * @memberof DatasetDetail
      */
     isViewRestricted: boolean;
+    /**
+     * Total size of dataset files (in bytes)
+     * @type {number}
+     * @memberof DatasetDetail
+     */
+    totalSizeBytes?: number | null;
     /**
      *
      * @type {string}

package/dist/esm/models/DatasetDetail.js

@@ -67,6 +67,7 @@ export function DatasetDetailFromJSONTyped(json, ignoreDiscriminator) {
         'info': json['info'],
         'share': !exists(json, 'share') ? undefined : NamedItemFromJSON(json['share']),
         'isViewRestricted': json['isViewRestricted'],
+        'totalSizeBytes': !exists(json, 'totalSizeBytes') ? undefined : json['totalSizeBytes'],
         'createdBy': json['createdBy'],
         'createdAt': (new Date(json['createdAt'])),
         'updatedAt': (new Date(json['updatedAt'])),
@@ -98,6 +99,7 @@ export function DatasetDetailToJSON(value) {
         'info': value.info,
         'share': NamedItemToJSON(value.share),
         'isViewRestricted': value.isViewRestricted,
+        'totalSizeBytes': value.totalSizeBytes,
         'createdBy': value.createdBy,
         'createdAt': (value.createdAt.toISOString()),
         'updatedAt': (value.updatedAt.toISOString()),

package/dist/esm/models/EntityType.d.ts

@@ -22,6 +22,7 @@ export declare enum EntityType {
     Process = "PROCESS",
     Reference = "REFERENCE",
     Notebook = "NOTEBOOK",
+    Workspace = "WORKSPACE",
     Sample = "SAMPLE",
     Share = "SHARE",
     Tag = "TAG",

package/dist/esm/models/EntityType.js

@@ -25,6 +25,7 @@ export var EntityType;
     EntityType["Process"] = "PROCESS";
     EntityType["Reference"] = "REFERENCE";
     EntityType["Notebook"] = "NOTEBOOK";
+    EntityType["Workspace"] = "WORKSPACE";
     EntityType["Sample"] = "SAMPLE";
     EntityType["Share"] = "SHARE";
     EntityType["Tag"] = "TAG";

package/dist/esm/models/ImportDataRequest.d.ts

@@ -40,6 +40,27 @@ export interface ImportDataRequest {
      * @memberof ImportDataRequest
      */
     tags?: Array<Tag> | null;
+    /**
+     * Method to download FastQ files
+     * @type {string}
+     * @memberof ImportDataRequest
+     */
+    downloadMethod?: ImportDataRequestDownloadMethodEnum;
+    /**
+     * dbGaP repository key (used to access protected data on SRA)
+     * @type {string}
+     * @memberof ImportDataRequest
+     */
+    dbgapKey?: string | null;
+}
+/**
+* @export
+* @enum {string}
+*/
+export declare enum ImportDataRequestDownloadMethodEnum {
+    Sratools = "sratools",
+    Ftp = "ftp",
+    Aspera = "aspera"
 }
 /**
  * Check if a given object implements the ImportDataRequest interface.

package/dist/esm/models/ImportDataRequest.js

@@ -13,6 +13,16 @@
  */
 import { exists } from '../runtime';
 import { TagFromJSON, TagToJSON, } from './Tag';
+/**
+* @export
+* @enum {string}
+*/
+export var ImportDataRequestDownloadMethodEnum;
+(function (ImportDataRequestDownloadMethodEnum) {
+    ImportDataRequestDownloadMethodEnum["Sratools"] = "sratools";
+    ImportDataRequestDownloadMethodEnum["Ftp"] = "ftp";
+    ImportDataRequestDownloadMethodEnum["Aspera"] = "aspera";
+})(ImportDataRequestDownloadMethodEnum || (ImportDataRequestDownloadMethodEnum = {}));
 /**
  * Check if a given object implements the ImportDataRequest interface.
  */
@@ -34,6 +44,8 @@ export function ImportDataRequestFromJSONTyped(json, ignoreDiscriminator) {
         'description': !exists(json, 'description') ? undefined : json['description'],
         'publicIds': json['publicIds'],
         'tags': !exists(json, 'tags') ? undefined : (json['tags'] === null ? null : json['tags'].map(TagFromJSON)),
+        'downloadMethod': !exists(json, 'downloadMethod') ? undefined : json['downloadMethod'],
+        'dbgapKey': !exists(json, 'dbgapKey') ? undefined : json['dbgapKey'],
     };
 }
 export function ImportDataRequestToJSON(value) {
@@ -48,5 +60,7 @@ export function ImportDataRequestToJSON(value) {
         'description': value.description,
         'publicIds': value.publicIds,
         'tags': value.tags === undefined ? undefined : (value.tags === null ? null : value.tags.map(TagToJSON)),
+        'downloadMethod': value.downloadMethod,
+        'dbgapKey': value.dbgapKey,
     };
 }

package/dist/esm/models/Workspace.d.ts

@@ -97,7 +97,7 @@ export interface Workspace {
      * @type {Date}
      * @memberof Workspace
      */
-    startedAt: Date;
+    startedAt?: Date | null;
     /**
      *
      * @type {Date}

package/dist/esm/models/Workspace.js

@@ -33,7 +33,6 @@ export function instanceOfWorkspace(value) {
     isInstance = isInstance && "sharingType" in value;
     isInstance = isInstance && "createdBy" in value;
     isInstance = isInstance && "createdAt" in value;
-    isInstance = isInstance && "startedAt" in value;
     isInstance = isInstance && "updatedAt" in value;
     return isInstance;
 }
@@ -57,7 +56,7 @@ export function WorkspaceFromJSONTyped(json, ignoreDiscriminator) {
         'sessions': !exists(json, 'sessions') ? undefined : (json['sessions'] === null ? null : json['sessions'].map(WorkspaceSessionFromJSON)),
         'createdBy': json['createdBy'],
         'createdAt': (new Date(json['createdAt'])),
-        'startedAt': (new Date(json['startedAt'])),
+        'startedAt': !exists(json, 'startedAt') ? undefined : (json['startedAt'] === null ? null : new Date(json['startedAt'])),
         'updatedAt': (new Date(json['updatedAt'])),
     };
 }
@@ -81,7 +80,7 @@ export function WorkspaceToJSON(value) {
         'sessions': value.sessions === undefined ? undefined : (value.sessions === null ? null : value.sessions.map(WorkspaceSessionToJSON)),
         'createdBy': value.createdBy,
         'createdAt': (value.createdAt.toISOString()),
-        'startedAt': (value.startedAt.toISOString()),
+        'startedAt': value.startedAt === undefined ? undefined : (value.startedAt === null ? null : value.startedAt.toISOString()),
         'updatedAt': (value.updatedAt.toISOString()),
     };
 }

package/dist/esm/models/WorkspaceInput.d.ts

@@ -54,6 +54,12 @@ export interface WorkspaceInput {
      * @memberof WorkspaceInput
      */
     sharingType: SharingType;
+    /**
+     * Time period (in hours) to automatically stop the workspace if running
+     * @type {number}
+     * @memberof WorkspaceInput
+     */
+    autoStopTimeout?: number | null;
 }
 /**
  * Check if a given object implements the WorkspaceInput interface.

package/dist/esm/models/WorkspaceInput.js

@@ -40,6 +40,7 @@ export function WorkspaceInputFromJSONTyped(json, ignoreDiscriminator) {
         'environmentId': !exists(json, 'environmentId') ? undefined : json['environmentId'],
         'computeConfig': WorkspaceComputeConfigFromJSON(json['computeConfig']),
         'sharingType': SharingTypeFromJSON(json['sharingType']),
+        'autoStopTimeout': !exists(json, 'autoStopTimeout') ? undefined : json['autoStopTimeout'],
     };
 }
 export function WorkspaceInputToJSON(value) {
@@ -56,5 +57,6 @@ export function WorkspaceInputToJSON(value) {
         'environmentId': value.environmentId,
         'computeConfig': WorkspaceComputeConfigToJSON(value.computeConfig),
         'sharingType': SharingTypeToJSON(value.sharingType),
+        'autoStopTimeout': value.autoStopTimeout,
     };
 }

package/dist/models/DatasetDetail.d.ts

@@ -132,6 +132,12 @@ export interface DatasetDetail {
      * @memberof DatasetDetail
      */
     isViewRestricted: boolean;
+    /**
+     * Total size of dataset files (in bytes)
+     * @type {number}
+     * @memberof DatasetDetail
+     */
+    totalSizeBytes?: number | null;
     /**
      *
      * @type {string}

package/dist/models/DatasetDetail.js

@@ -72,6 +72,7 @@ function DatasetDetailFromJSONTyped(json, ignoreDiscriminator) {
         'info': json['info'],
         'share': !(0, runtime_1.exists)(json, 'share') ? undefined : (0, NamedItem_1.NamedItemFromJSON)(json['share']),
         'isViewRestricted': json['isViewRestricted'],
+        'totalSizeBytes': !(0, runtime_1.exists)(json, 'totalSizeBytes') ? undefined : json['totalSizeBytes'],
         'createdBy': json['createdBy'],
         'createdAt': (new Date(json['createdAt'])),
         'updatedAt': (new Date(json['updatedAt'])),
@@ -104,6 +105,7 @@ function DatasetDetailToJSON(value) {
         'info': value.info,
         'share': (0, NamedItem_1.NamedItemToJSON)(value.share),
         'isViewRestricted': value.isViewRestricted,
+        'totalSizeBytes': value.totalSizeBytes,
         'createdBy': value.createdBy,
         'createdAt': (value.createdAt.toISOString()),
         'updatedAt': (value.updatedAt.toISOString()),

package/dist/models/EntityType.d.ts

@@ -22,6 +22,7 @@ export declare enum EntityType {
     Process = "PROCESS",
     Reference = "REFERENCE",
     Notebook = "NOTEBOOK",
+    Workspace = "WORKSPACE",
     Sample = "SAMPLE",
     Share = "SHARE",
     Tag = "TAG",

package/dist/models/EntityType.js

@@ -28,6 +28,7 @@ var EntityType;
     EntityType["Process"] = "PROCESS";
     EntityType["Reference"] = "REFERENCE";
     EntityType["Notebook"] = "NOTEBOOK";
+    EntityType["Workspace"] = "WORKSPACE";
     EntityType["Sample"] = "SAMPLE";
     EntityType["Share"] = "SHARE";
     EntityType["Tag"] = "TAG";

package/dist/models/ImportDataRequest.d.ts

@@ -40,6 +40,27 @@ export interface ImportDataRequest {
      * @memberof ImportDataRequest
      */
     tags?: Array<Tag> | null;
+    /**
+     * Method to download FastQ files
+     * @type {string}
+     * @memberof ImportDataRequest
+     */
+    downloadMethod?: ImportDataRequestDownloadMethodEnum;
+    /**
+     * dbGaP repository key (used to access protected data on SRA)
+     * @type {string}
+     * @memberof ImportDataRequest
+     */
+    dbgapKey?: string | null;
+}
+/**
+* @export
+* @enum {string}
+*/
+export declare enum ImportDataRequestDownloadMethodEnum {
+    Sratools = "sratools",
+    Ftp = "ftp",
+    Aspera = "aspera"
 }
 /**
  * Check if a given object implements the ImportDataRequest interface.

package/dist/models/ImportDataRequest.js

@@ -13,9 +13,19 @@
  * Do not edit the class manually.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ImportDataRequestToJSON = exports.ImportDataRequestFromJSONTyped = exports.ImportDataRequestFromJSON = exports.instanceOfImportDataRequest = void 0;
+exports.ImportDataRequestToJSON = exports.ImportDataRequestFromJSONTyped = exports.ImportDataRequestFromJSON = exports.instanceOfImportDataRequest = exports.ImportDataRequestDownloadMethodEnum = void 0;
 const runtime_1 = require("../runtime");
 const Tag_1 = require("./Tag");
+/**
+* @export
+* @enum {string}
+*/
+var ImportDataRequestDownloadMethodEnum;
+(function (ImportDataRequestDownloadMethodEnum) {
+    ImportDataRequestDownloadMethodEnum["Sratools"] = "sratools";
+    ImportDataRequestDownloadMethodEnum["Ftp"] = "ftp";
+    ImportDataRequestDownloadMethodEnum["Aspera"] = "aspera";
+})(ImportDataRequestDownloadMethodEnum = exports.ImportDataRequestDownloadMethodEnum || (exports.ImportDataRequestDownloadMethodEnum = {}));
 /**
  * Check if a given object implements the ImportDataRequest interface.
  */
@@ -39,6 +49,8 @@ function ImportDataRequestFromJSONTyped(json, ignoreDiscriminator) {
         'description': !(0, runtime_1.exists)(json, 'description') ? undefined : json['description'],
         'publicIds': json['publicIds'],
         'tags': !(0, runtime_1.exists)(json, 'tags') ? undefined : (json['tags'] === null ? null : json['tags'].map(Tag_1.TagFromJSON)),
+        'downloadMethod': !(0, runtime_1.exists)(json, 'downloadMethod') ? undefined : json['downloadMethod'],
+        'dbgapKey': !(0, runtime_1.exists)(json, 'dbgapKey') ? undefined : json['dbgapKey'],
     };
 }
 exports.ImportDataRequestFromJSONTyped = ImportDataRequestFromJSONTyped;
@@ -54,6 +66,8 @@ function ImportDataRequestToJSON(value) {
         'description': value.description,
         'publicIds': value.publicIds,
         'tags': value.tags === undefined ? undefined : (value.tags === null ? null : value.tags.map(Tag_1.TagToJSON)),
+        'downloadMethod': value.downloadMethod,
+        'dbgapKey': value.dbgapKey,
     };
 }
 exports.ImportDataRequestToJSON = ImportDataRequestToJSON;

package/dist/models/Workspace.d.ts

@@ -97,7 +97,7 @@ export interface Workspace {
      * @type {Date}
      * @memberof Workspace
      */
-    startedAt: Date;
+    startedAt?: Date | null;
     /**
      *
      * @type {Date}

package/dist/models/Workspace.js

@@ -36,7 +36,6 @@ function instanceOfWorkspace(value) {
     isInstance = isInstance && "sharingType" in value;
     isInstance = isInstance && "createdBy" in value;
     isInstance = isInstance && "createdAt" in value;
-    isInstance = isInstance && "startedAt" in value;
     isInstance = isInstance && "updatedAt" in value;
     return isInstance;
 }
@@ -62,7 +61,7 @@ function WorkspaceFromJSONTyped(json, ignoreDiscriminator) {
         'sessions': !(0, runtime_1.exists)(json, 'sessions') ? undefined : (json['sessions'] === null ? null : json['sessions'].map(WorkspaceSession_1.WorkspaceSessionFromJSON)),
         'createdBy': json['createdBy'],
         'createdAt': (new Date(json['createdAt'])),
-        'startedAt': (new Date(json['startedAt'])),
+        'startedAt': !(0, runtime_1.exists)(json, 'startedAt') ? undefined : (json['startedAt'] === null ? null : new Date(json['startedAt'])),
         'updatedAt': (new Date(json['updatedAt'])),
     };
 }
@@ -87,7 +86,7 @@ function WorkspaceToJSON(value) {
         'sessions': value.sessions === undefined ? undefined : (value.sessions === null ? null : value.sessions.map(WorkspaceSession_1.WorkspaceSessionToJSON)),
         'createdBy': value.createdBy,
         'createdAt': (value.createdAt.toISOString()),
-        'startedAt': (value.startedAt.toISOString()),
+        'startedAt': value.startedAt === undefined ? undefined : (value.startedAt === null ? null : value.startedAt.toISOString()),
         'updatedAt': (value.updatedAt.toISOString()),
     };
 }

package/dist/models/WorkspaceInput.d.ts

@@ -54,6 +54,12 @@ export interface WorkspaceInput {
      * @memberof WorkspaceInput
      */
     sharingType: SharingType;
+    /**
+     * Time period (in hours) to automatically stop the workspace if running
+     * @type {number}
+     * @memberof WorkspaceInput
+     */
+    autoStopTimeout?: number | null;
 }
 /**
  * Check if a given object implements the WorkspaceInput interface.

package/dist/models/WorkspaceInput.js

@@ -45,6 +45,7 @@ function WorkspaceInputFromJSONTyped(json, ignoreDiscriminator) {
         'environmentId': !(0, runtime_1.exists)(json, 'environmentId') ? undefined : json['environmentId'],
         'computeConfig': (0, WorkspaceComputeConfig_1.WorkspaceComputeConfigFromJSON)(json['computeConfig']),
         'sharingType': (0, SharingType_1.SharingTypeFromJSON)(json['sharingType']),
+        'autoStopTimeout': !(0, runtime_1.exists)(json, 'autoStopTimeout') ? undefined : json['autoStopTimeout'],
     };
 }
 exports.WorkspaceInputFromJSONTyped = WorkspaceInputFromJSONTyped;
@@ -62,6 +63,7 @@ function WorkspaceInputToJSON(value) {
         'environmentId': value.environmentId,
         'computeConfig': (0, WorkspaceComputeConfig_1.WorkspaceComputeConfigToJSON)(value.computeConfig),
         'sharingType': (0, SharingType_1.SharingTypeToJSON)(value.sharingType),
+        'autoStopTimeout': value.autoStopTimeout,
     };
 }
 exports.WorkspaceInputToJSON = WorkspaceInputToJSON;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cirrobio/api-client",
-  "version": "0.12.2",
+  "version": "0.12.4",
   "description": "API client for Cirro",
   "author": "CirroBio",
   "repository": {