@cirrobio/api-client 0.10.4 → 0.10.5

package/README.md

@@ -36,7 +36,7 @@ navigate to the folder of your consuming project and run one of the following co
 _published:_
 
 ```
-npm install @cirrobio/api-client@0.10.2 --save
+npm install @cirrobio/api-client@0.10.5 --save
 ```
 
 _unPublished (not recommended):_

package/dist/apis/DatasetsApi.d.ts

@@ -10,7 +10,7 @@
  * Do not edit the class manually.
  */
 import * as runtime from '../runtime';
-import type { CreateResponse, DatasetAssetsManifest, DatasetDetail, ImportDataRequest, PaginatedResponseDatasetListDto, UpdateDatasetRequest, UploadDatasetCreateResponse, UploadDatasetRequest } from '../models/index';
+import type { CreateResponse, DatasetAssetsManifest, DatasetDetail, ImportDataRequest, PaginatedResponseDatasetListDto, SampleSheets, UpdateDatasetRequest, UploadDatasetCreateResponse, UploadDatasetRequest } from '../models/index';
 export interface DeleteDatasetRequest {
     projectId: string;
     datasetId: string;
@@ -30,6 +30,10 @@ export interface GetDatasetsRequest {
     limit?: number;
     nextToken?: string;
 }
+export interface GetSampleSheetsRequest {
+    projectId: string;
+    datasetId: string;
+}
 export interface ImportPublicDatasetRequest {
     projectId: string;
     importDataRequest: ImportDataRequest;
@@ -99,6 +103,16 @@ export declare class DatasetsApi extends runtime.BaseAPI {
      * List datasets
      */
     getDatasets(requestParameters: GetDatasetsRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<PaginatedResponseDatasetListDto>;
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheetsRaw(requestParameters: GetSampleSheetsRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<SampleSheets>>;
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheets(requestParameters: GetSampleSheetsRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<SampleSheets>;
     /**
      * Download data from public repositories
      * Import public dataset

package/dist/apis/DatasetsApi.js

@@ -197,6 +197,46 @@ class DatasetsApi extends runtime.BaseAPI {
             return yield response.value();
         });
     }
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheetsRaw(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+                throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling getSampleSheets.');
+            }
+            if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+                throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling getSampleSheets.');
+            }
+            const queryParameters = {};
+            const headerParameters = {};
+            if (this.configuration && this.configuration.accessToken) {
+                const token = this.configuration.accessToken;
+                const tokenString = yield token("accessToken", []);
+                if (tokenString) {
+                    headerParameters["Authorization"] = `Bearer ${tokenString}`;
+                }
+            }
+            const response = yield this.request({
+                path: `/projects/{projectId}/datasets/{datasetId}/samplesheet`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
+                method: 'GET',
+                headers: headerParameters,
+                query: queryParameters,
+            }, initOverrides);
+            return new runtime.JSONApiResponse(response, (jsonValue) => (0, index_1.SampleSheetsFromJSON)(jsonValue));
+        });
+    }
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheets(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const response = yield this.getSampleSheetsRaw(requestParameters, initOverrides);
+            return yield response.value();
+        });
+    }
     /**
      * Download data from public repositories
      * Import public dataset

package/dist/apis/ProcessesApi.d.ts

@@ -10,7 +10,7 @@
  * Do not edit the class manually.
  */
 import * as runtime from '../runtime';
-import type { CreateResponse, CustomPipelineSettings, CustomProcessInput, FileRequirements, FormSchema, PipelineCost, Process, ProcessDetail, ValidateFileRequirementsRequest } from '../models/index';
+import type { CreateResponse, CustomPipelineSettings, CustomProcessInput, FileNameMatch, FileRequirements, FormSchema, PipelineCost, Process, ProcessDetail, ValidateFileNamePatternsRequest, ValidateFileRequirementsRequest } from '../models/index';
 export interface ArchiveCustomProcessRequest {
     processId: string;
 }
@@ -37,6 +37,10 @@ export interface UpdateCustomProcessRequest {
     processId: string;
     customProcessInput: CustomProcessInput;
 }
+export interface ValidateFileNamePatternsOperationRequest {
+    processId: string;
+    validateFileNamePatternsRequest: ValidateFileNamePatternsRequest;
+}
 export interface ValidateFileRequirementsOperationRequest {
     processId: string;
     validateFileRequirementsRequest: ValidateFileRequirementsRequest;
@@ -125,6 +129,16 @@ export declare class ProcessesApi extends runtime.BaseAPI {
      * Update custom process
      */
     updateCustomProcess(requestParameters: UpdateCustomProcessRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatternsRaw(requestParameters: ValidateFileNamePatternsOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<Array<FileNameMatch>>>;
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatterns(requestParameters: ValidateFileNamePatternsOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<FileNameMatch>>;
     /**
      * Checks the input file names with the expected files for a data type (ingest processes only)
      * Validate file requirements

package/dist/apis/ProcessesApi.js

@@ -335,6 +335,48 @@ class ProcessesApi extends runtime.BaseAPI {
             yield this.updateCustomProcessRaw(requestParameters, initOverrides);
         });
     }
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatternsRaw(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            if (requestParameters.processId === null || requestParameters.processId === undefined) {
+                throw new runtime.RequiredError('processId', 'Required parameter requestParameters.processId was null or undefined when calling validateFileNamePatterns.');
+            }
+            if (requestParameters.validateFileNamePatternsRequest === null || requestParameters.validateFileNamePatternsRequest === undefined) {
+                throw new runtime.RequiredError('validateFileNamePatternsRequest', 'Required parameter requestParameters.validateFileNamePatternsRequest was null or undefined when calling validateFileNamePatterns.');
+            }
+            const queryParameters = {};
+            const headerParameters = {};
+            headerParameters['Content-Type'] = 'application/json';
+            if (this.configuration && this.configuration.accessToken) {
+                const token = this.configuration.accessToken;
+                const tokenString = yield token("accessToken", []);
+                if (tokenString) {
+                    headerParameters["Authorization"] = `Bearer ${tokenString}`;
+                }
+            }
+            const response = yield this.request({
+                path: `/processes/{processId}/validate-files:test`.replace(`{${"processId"}}`, encodeURIComponent(String(requestParameters.processId))),
+                method: 'POST',
+                headers: headerParameters,
+                query: queryParameters,
+                body: (0, index_1.ValidateFileNamePatternsRequestToJSON)(requestParameters.validateFileNamePatternsRequest),
+            }, initOverrides);
+            return new runtime.JSONApiResponse(response, (jsonValue) => jsonValue.map(index_1.FileNameMatchFromJSON));
+        });
+    }
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatterns(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const response = yield this.validateFileNamePatternsRaw(requestParameters, initOverrides);
+            return yield response.value();
+        });
+    }
     /**
      * Checks the input file names with the expected files for a data type (ingest processes only)
      * Validate file requirements

package/dist/esm/apis/DatasetsApi.d.ts

@@ -10,7 +10,7 @@
  * Do not edit the class manually.
  */
 import * as runtime from '../runtime';
-import type { CreateResponse, DatasetAssetsManifest, DatasetDetail, ImportDataRequest, PaginatedResponseDatasetListDto, UpdateDatasetRequest, UploadDatasetCreateResponse, UploadDatasetRequest } from '../models/index';
+import type { CreateResponse, DatasetAssetsManifest, DatasetDetail, ImportDataRequest, PaginatedResponseDatasetListDto, SampleSheets, UpdateDatasetRequest, UploadDatasetCreateResponse, UploadDatasetRequest } from '../models/index';
 export interface DeleteDatasetRequest {
     projectId: string;
     datasetId: string;
@@ -30,6 +30,10 @@ export interface GetDatasetsRequest {
     limit?: number;
     nextToken?: string;
 }
+export interface GetSampleSheetsRequest {
+    projectId: string;
+    datasetId: string;
+}
 export interface ImportPublicDatasetRequest {
     projectId: string;
     importDataRequest: ImportDataRequest;
@@ -99,6 +103,16 @@ export declare class DatasetsApi extends runtime.BaseAPI {
      * List datasets
      */
     getDatasets(requestParameters: GetDatasetsRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<PaginatedResponseDatasetListDto>;
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheetsRaw(requestParameters: GetSampleSheetsRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<SampleSheets>>;
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheets(requestParameters: GetSampleSheetsRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<SampleSheets>;
     /**
      * Download data from public repositories
      * Import public dataset

package/dist/esm/apis/DatasetsApi.js

@@ -21,7 +21,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
     });
 };
 import * as runtime from '../runtime';
-import { CreateResponseFromJSON, DatasetAssetsManifestFromJSON, DatasetDetailFromJSON, ImportDataRequestToJSON, PaginatedResponseDatasetListDtoFromJSON, UpdateDatasetRequestToJSON, UploadDatasetCreateResponseFromJSON, UploadDatasetRequestToJSON, } from '../models/index';
+import { CreateResponseFromJSON, DatasetAssetsManifestFromJSON, DatasetDetailFromJSON, ImportDataRequestToJSON, PaginatedResponseDatasetListDtoFromJSON, SampleSheetsFromJSON, UpdateDatasetRequestToJSON, UploadDatasetCreateResponseFromJSON, UploadDatasetRequestToJSON, } from '../models/index';
 /**
  *
  */
@@ -194,6 +194,46 @@ export class DatasetsApi extends runtime.BaseAPI {
             return yield response.value();
         });
     }
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheetsRaw(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
+                throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling getSampleSheets.');
+            }
+            if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
+                throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling getSampleSheets.');
+            }
+            const queryParameters = {};
+            const headerParameters = {};
+            if (this.configuration && this.configuration.accessToken) {
+                const token = this.configuration.accessToken;
+                const tokenString = yield token("accessToken", []);
+                if (tokenString) {
+                    headerParameters["Authorization"] = `Bearer ${tokenString}`;
+                }
+            }
+            const response = yield this.request({
+                path: `/projects/{projectId}/datasets/{datasetId}/samplesheet`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
+                method: 'GET',
+                headers: headerParameters,
+                query: queryParameters,
+            }, initOverrides);
+            return new runtime.JSONApiResponse(response, (jsonValue) => SampleSheetsFromJSON(jsonValue));
+        });
+    }
+    /**
+     * Generates the sample sheet output for this dataset, useful for debugging the preprocess script.
+     * Generate sample sheets
+     */
+    getSampleSheets(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const response = yield this.getSampleSheetsRaw(requestParameters, initOverrides);
+            return yield response.value();
+        });
+    }
     /**
      * Download data from public repositories
      * Import public dataset

package/dist/esm/apis/ProcessesApi.d.ts

@@ -10,7 +10,7 @@
  * Do not edit the class manually.
  */
 import * as runtime from '../runtime';
-import type { CreateResponse, CustomPipelineSettings, CustomProcessInput, FileRequirements, FormSchema, PipelineCost, Process, ProcessDetail, ValidateFileRequirementsRequest } from '../models/index';
+import type { CreateResponse, CustomPipelineSettings, CustomProcessInput, FileNameMatch, FileRequirements, FormSchema, PipelineCost, Process, ProcessDetail, ValidateFileNamePatternsRequest, ValidateFileRequirementsRequest } from '../models/index';
 export interface ArchiveCustomProcessRequest {
     processId: string;
 }
@@ -37,6 +37,10 @@ export interface UpdateCustomProcessRequest {
     processId: string;
     customProcessInput: CustomProcessInput;
 }
+export interface ValidateFileNamePatternsOperationRequest {
+    processId: string;
+    validateFileNamePatternsRequest: ValidateFileNamePatternsRequest;
+}
 export interface ValidateFileRequirementsOperationRequest {
     processId: string;
     validateFileRequirementsRequest: ValidateFileRequirementsRequest;
@@ -125,6 +129,16 @@ export declare class ProcessesApi extends runtime.BaseAPI {
      * Update custom process
      */
     updateCustomProcess(requestParameters: UpdateCustomProcessRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatternsRaw(requestParameters: ValidateFileNamePatternsOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<Array<FileNameMatch>>>;
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatterns(requestParameters: ValidateFileNamePatternsOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<FileNameMatch>>;
     /**
      * Checks the input file names with the expected files for a data type (ingest processes only)
      * Validate file requirements

package/dist/esm/apis/ProcessesApi.js

@@ -21,7 +21,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
     });
 };
 import * as runtime from '../runtime';
-import { CreateResponseFromJSON, CustomPipelineSettingsFromJSON, CustomProcessInputToJSON, FileRequirementsFromJSON, FormSchemaFromJSON, PipelineCostFromJSON, ProcessFromJSON, ProcessDetailFromJSON, ValidateFileRequirementsRequestToJSON, } from '../models/index';
+import { CreateResponseFromJSON, CustomPipelineSettingsFromJSON, CustomProcessInputToJSON, FileNameMatchFromJSON, FileRequirementsFromJSON, FormSchemaFromJSON, PipelineCostFromJSON, ProcessFromJSON, ProcessDetailFromJSON, ValidateFileNamePatternsRequestToJSON, ValidateFileRequirementsRequestToJSON, } from '../models/index';
 /**
  *
  */
@@ -332,6 +332,48 @@ export class ProcessesApi extends runtime.BaseAPI {
             yield this.updateCustomProcessRaw(requestParameters, initOverrides);
         });
     }
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatternsRaw(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            if (requestParameters.processId === null || requestParameters.processId === undefined) {
+                throw new runtime.RequiredError('processId', 'Required parameter requestParameters.processId was null or undefined when calling validateFileNamePatterns.');
+            }
+            if (requestParameters.validateFileNamePatternsRequest === null || requestParameters.validateFileNamePatternsRequest === undefined) {
+                throw new runtime.RequiredError('validateFileNamePatternsRequest', 'Required parameter requestParameters.validateFileNamePatternsRequest was null or undefined when calling validateFileNamePatterns.');
+            }
+            const queryParameters = {};
+            const headerParameters = {};
+            headerParameters['Content-Type'] = 'application/json';
+            if (this.configuration && this.configuration.accessToken) {
+                const token = this.configuration.accessToken;
+                const tokenString = yield token("accessToken", []);
+                if (tokenString) {
+                    headerParameters["Authorization"] = `Bearer ${tokenString}`;
+                }
+            }
+            const response = yield this.request({
+                path: `/processes/{processId}/validate-files:test`.replace(`{${"processId"}}`, encodeURIComponent(String(requestParameters.processId))),
+                method: 'POST',
+                headers: headerParameters,
+                query: queryParameters,
+                body: ValidateFileNamePatternsRequestToJSON(requestParameters.validateFileNamePatternsRequest),
+            }, initOverrides);
+            return new runtime.JSONApiResponse(response, (jsonValue) => jsonValue.map(FileNameMatchFromJSON));
+        });
+    }
+    /**
+     * Checks the input file names with the patterns for testing regex matching
+     * Validate file name patterns
+     */
+    validateFileNamePatterns(requestParameters, initOverrides) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const response = yield this.validateFileNamePatternsRaw(requestParameters, initOverrides);
+            return yield response.value();
+        });
+    }
     /**
      * Checks the input file names with the expected files for a data type (ingest processes only)
      * Validate file requirements

package/dist/esm/models/DatasetDetail.d.ts

@@ -54,6 +54,12 @@ export interface DatasetDetail {
      * @memberof DatasetDetail
      */
     projectId: string;
+    /**
+     * The originating project ID might be different if the dataset was shared from another project.
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    originatingProjectId?: string;
     /**
      *
      * @type {Array<string>}

package/dist/esm/models/DatasetDetail.js

@@ -55,6 +55,7 @@ export function DatasetDetailFromJSONTyped(json, ignoreDiscriminator) {
         's3': json['s3'],
         'processId': json['processId'],
         'projectId': json['projectId'],
+        'originatingProjectId': !exists(json, 'originatingProjectId') ? undefined : json['originatingProjectId'],
         'sourceDatasetIds': json['sourceDatasetIds'],
         'sourceDatasets': (json['sourceDatasets'].map(NamedItemFromJSON)),
         'sourceSampleIds': json['sourceSampleIds'],
@@ -85,6 +86,7 @@ export function DatasetDetailToJSON(value) {
         's3': value.s3,
         'processId': value.processId,
         'projectId': value.projectId,
+        'originatingProjectId': value.originatingProjectId,
         'sourceDatasetIds': value.sourceDatasetIds,
         'sourceDatasets': (value.sourceDatasets.map(NamedItemToJSON)),
         'sourceSampleIds': value.sourceSampleIds,

package/dist/esm/models/FileNameMatch.d.ts

@@ -0,0 +1,43 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface FileNameMatch
+ */
+export interface FileNameMatch {
+    /**
+     *
+     * @type {string}
+     * @memberof FileNameMatch
+     */
+    fileName: string;
+    /**
+     *
+     * @type {string}
+     * @memberof FileNameMatch
+     */
+    sampleName: string;
+    /**
+     *
+     * @type {string}
+     * @memberof FileNameMatch
+     */
+    regexPatternMatch: string;
+}
+/**
+ * Check if a given object implements the FileNameMatch interface.
+ */
+export declare function instanceOfFileNameMatch(value: object): boolean;
+export declare function FileNameMatchFromJSON(json: any): FileNameMatch;
+export declare function FileNameMatchFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileNameMatch;
+export declare function FileNameMatchToJSON(value?: FileNameMatch | null): any;

package/dist/esm/models/FileNameMatch.js

@@ -0,0 +1,49 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ * Check if a given object implements the FileNameMatch interface.
+ */
+export function instanceOfFileNameMatch(value) {
+    let isInstance = true;
+    isInstance = isInstance && "fileName" in value;
+    isInstance = isInstance && "sampleName" in value;
+    isInstance = isInstance && "regexPatternMatch" in value;
+    return isInstance;
+}
+export function FileNameMatchFromJSON(json) {
+    return FileNameMatchFromJSONTyped(json, false);
+}
+export function FileNameMatchFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'fileName': json['fileName'],
+        'sampleName': json['sampleName'],
+        'regexPatternMatch': json['regexPatternMatch'],
+    };
+}
+export function FileNameMatchToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'fileName': value.fileName,
+        'sampleName': value.sampleName,
+        'regexPatternMatch': value.regexPatternMatch,
+    };
+}

package/dist/esm/models/ProjectUser.d.ts

@@ -46,6 +46,12 @@ export interface ProjectUser {
      * @memberof ProjectUser
      */
     email: string;
+    /**
+     *
+     * @type {string}
+     * @memberof ProjectUser
+     */
+    jobTitle: string;
     /**
      *
      * @type {ProjectRole}

package/dist/esm/models/ProjectUser.js

@@ -22,6 +22,7 @@ export function instanceOfProjectUser(value) {
     isInstance = isInstance && "organization" in value;
     isInstance = isInstance && "department" in value;
     isInstance = isInstance && "email" in value;
+    isInstance = isInstance && "jobTitle" in value;
     isInstance = isInstance && "role" in value;
     return isInstance;
 }
@@ -38,6 +39,7 @@ export function ProjectUserFromJSONTyped(json, ignoreDiscriminator) {
         'organization': json['organization'],
         'department': json['department'],
         'email': json['email'],
+        'jobTitle': json['jobTitle'],
         'role': ProjectRoleFromJSON(json['role']),
     };
 }
@@ -54,6 +56,7 @@ export function ProjectUserToJSON(value) {
         'organization': value.organization,
         'department': value.department,
         'email': value.email,
+        'jobTitle': value.jobTitle,
         'role': ProjectRoleToJSON(value.role),
     };
 }

package/dist/esm/models/SampleSheets.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface SampleSheets
+ */
+export interface SampleSheets {
+    /**
+     * Written to samplesheet.csv, available as ds.samplesheet in preprocess
+     * @type {string}
+     * @memberof SampleSheets
+     */
+    samples?: string;
+    /**
+     * Written to files.csv, available as ds.files in preprocess
+     * @type {string}
+     * @memberof SampleSheets
+     */
+    files?: string;
+}
+/**
+ * Check if a given object implements the SampleSheets interface.
+ */
+export declare function instanceOfSampleSheets(value: object): boolean;
+export declare function SampleSheetsFromJSON(json: any): SampleSheets;
+export declare function SampleSheetsFromJSONTyped(json: any, ignoreDiscriminator: boolean): SampleSheets;
+export declare function SampleSheetsToJSON(value?: SampleSheets | null): any;

package/dist/esm/models/SampleSheets.js

@@ -0,0 +1,45 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+import { exists } from '../runtime';
+/**
+ * Check if a given object implements the SampleSheets interface.
+ */
+export function instanceOfSampleSheets(value) {
+    let isInstance = true;
+    return isInstance;
+}
+export function SampleSheetsFromJSON(json) {
+    return SampleSheetsFromJSONTyped(json, false);
+}
+export function SampleSheetsFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'samples': !exists(json, 'samples') ? undefined : json['samples'],
+        'files': !exists(json, 'files') ? undefined : json['files'],
+    };
+}
+export function SampleSheetsToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'samples': value.samples,
+        'files': value.files,
+    };
+}

package/dist/esm/models/User.d.ts

@@ -39,6 +39,12 @@ export interface User {
      * @memberof User
      */
     department: string;
+    /**
+     *
+     * @type {string}
+     * @memberof User
+     */
+    jobTitle: string;
 }
 /**
  * Check if a given object implements the User interface.

package/dist/esm/models/User.js

@@ -20,6 +20,7 @@ export function instanceOfUser(value) {
     isInstance = isInstance && "username" in value;
     isInstance = isInstance && "organization" in value;
     isInstance = isInstance && "department" in value;
+    isInstance = isInstance && "jobTitle" in value;
     return isInstance;
 }
 export function UserFromJSON(json) {
@@ -34,6 +35,7 @@ export function UserFromJSONTyped(json, ignoreDiscriminator) {
         'username': json['username'],
         'organization': json['organization'],
         'department': json['department'],
+        'jobTitle': json['jobTitle'],
     };
 }
 export function UserToJSON(value) {
@@ -48,5 +50,6 @@ export function UserToJSON(value) {
         'username': value.username,
         'organization': value.organization,
         'department': value.department,
+        'jobTitle': value.jobTitle,
     };
 }

package/dist/esm/models/ValidateFileNamePatternsRequest.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface ValidateFileNamePatternsRequest
+ */
+export interface ValidateFileNamePatternsRequest {
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof ValidateFileNamePatternsRequest
+     */
+    fileNames: Array<string>;
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof ValidateFileNamePatternsRequest
+     */
+    fileNamePatterns: Array<string>;
+}
+/**
+ * Check if a given object implements the ValidateFileNamePatternsRequest interface.
+ */
+export declare function instanceOfValidateFileNamePatternsRequest(value: object): boolean;
+export declare function ValidateFileNamePatternsRequestFromJSON(json: any): ValidateFileNamePatternsRequest;
+export declare function ValidateFileNamePatternsRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): ValidateFileNamePatternsRequest;
+export declare function ValidateFileNamePatternsRequestToJSON(value?: ValidateFileNamePatternsRequest | null): any;

package/dist/esm/models/ValidateFileNamePatternsRequest.js

@@ -0,0 +1,46 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ * Check if a given object implements the ValidateFileNamePatternsRequest interface.
+ */
+export function instanceOfValidateFileNamePatternsRequest(value) {
+    let isInstance = true;
+    isInstance = isInstance && "fileNames" in value;
+    isInstance = isInstance && "fileNamePatterns" in value;
+    return isInstance;
+}
+export function ValidateFileNamePatternsRequestFromJSON(json) {
+    return ValidateFileNamePatternsRequestFromJSONTyped(json, false);
+}
+export function ValidateFileNamePatternsRequestFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'fileNames': json['fileNames'],
+        'fileNamePatterns': json['fileNamePatterns'],
+    };
+}
+export function ValidateFileNamePatternsRequestToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'fileNames': value.fileNames,
+        'fileNamePatterns': value.fileNamePatterns,
+    };
+}

package/dist/esm/models/index.d.ts

@@ -49,6 +49,7 @@ export * from './Executor';
 export * from './FeatureFlags';
 export * from './FileEntry';
 export * from './FileMappingRule';
+export * from './FileNameMatch';
 export * from './FileNamePattern';
 export * from './FileRequirements';
 export * from './FormSchema';
@@ -116,6 +117,7 @@ export * from './ResourcesInfo';
 export * from './RunAnalysisRequest';
 export * from './Sample';
 export * from './SampleRequest';
+export * from './SampleSheets';
 export * from './ServiceConnection';
 export * from './SetUserProjectRoleRequest';
 export * from './SftpCredentials';
@@ -140,4 +142,5 @@ export * from './User';
 export * from './UserDetail';
 export * from './UserProjectAssignment';
 export * from './UserSettings';
+export * from './ValidateFileNamePatternsRequest';
 export * from './ValidateFileRequirementsRequest';

package/dist/esm/models/index.js

@@ -51,6 +51,7 @@ export * from './Executor';
 export * from './FeatureFlags';
 export * from './FileEntry';
 export * from './FileMappingRule';
+export * from './FileNameMatch';
 export * from './FileNamePattern';
 export * from './FileRequirements';
 export * from './FormSchema';
@@ -118,6 +119,7 @@ export * from './ResourcesInfo';
 export * from './RunAnalysisRequest';
 export * from './Sample';
 export * from './SampleRequest';
+export * from './SampleSheets';
 export * from './ServiceConnection';
 export * from './SetUserProjectRoleRequest';
 export * from './SftpCredentials';
@@ -142,4 +144,5 @@ export * from './User';
 export * from './UserDetail';
 export * from './UserProjectAssignment';
 export * from './UserSettings';
+export * from './ValidateFileNamePatternsRequest';
 export * from './ValidateFileRequirementsRequest';

package/dist/esm/runtime.js

@@ -20,7 +20,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
         step((generator = generator.apply(thisArg, _arguments || [])).next());
     });
 };
-export const BASE_PATH = "http://localhost:8080/api".replace(/\/+$/, "");
+export const BASE_PATH = "https://dev.cirro.bio/api".replace(/\/+$/, "");
 export class Configuration {
     constructor(configuration = {}) {
         this.configuration = configuration;

package/dist/models/DatasetDetail.d.ts

@@ -54,6 +54,12 @@ export interface DatasetDetail {
      * @memberof DatasetDetail
      */
     projectId: string;
+    /**
+     * The originating project ID might be different if the dataset was shared from another project.
+     * @type {string}
+     * @memberof DatasetDetail
+     */
+    originatingProjectId?: string;
     /**
      *
      * @type {Array<string>}

package/dist/models/DatasetDetail.js

@@ -60,6 +60,7 @@ function DatasetDetailFromJSONTyped(json, ignoreDiscriminator) {
         's3': json['s3'],
         'processId': json['processId'],
         'projectId': json['projectId'],
+        'originatingProjectId': !(0, runtime_1.exists)(json, 'originatingProjectId') ? undefined : json['originatingProjectId'],
         'sourceDatasetIds': json['sourceDatasetIds'],
         'sourceDatasets': (json['sourceDatasets'].map(NamedItem_1.NamedItemFromJSON)),
         'sourceSampleIds': json['sourceSampleIds'],
@@ -91,6 +92,7 @@ function DatasetDetailToJSON(value) {
         's3': value.s3,
         'processId': value.processId,
         'projectId': value.projectId,
+        'originatingProjectId': value.originatingProjectId,
         'sourceDatasetIds': value.sourceDatasetIds,
         'sourceDatasets': (value.sourceDatasets.map(NamedItem_1.NamedItemToJSON)),
         'sourceSampleIds': value.sourceSampleIds,

package/dist/models/FileNameMatch.d.ts

@@ -0,0 +1,43 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface FileNameMatch
+ */
+export interface FileNameMatch {
+    /**
+     *
+     * @type {string}
+     * @memberof FileNameMatch
+     */
+    fileName: string;
+    /**
+     *
+     * @type {string}
+     * @memberof FileNameMatch
+     */
+    sampleName: string;
+    /**
+     *
+     * @type {string}
+     * @memberof FileNameMatch
+     */
+    regexPatternMatch: string;
+}
+/**
+ * Check if a given object implements the FileNameMatch interface.
+ */
+export declare function instanceOfFileNameMatch(value: object): boolean;
+export declare function FileNameMatchFromJSON(json: any): FileNameMatch;
+export declare function FileNameMatchFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileNameMatch;
+export declare function FileNameMatchToJSON(value?: FileNameMatch | null): any;

package/dist/models/FileNameMatch.js

@@ -0,0 +1,56 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.FileNameMatchToJSON = exports.FileNameMatchFromJSONTyped = exports.FileNameMatchFromJSON = exports.instanceOfFileNameMatch = void 0;
+/**
+ * Check if a given object implements the FileNameMatch interface.
+ */
+function instanceOfFileNameMatch(value) {
+    let isInstance = true;
+    isInstance = isInstance && "fileName" in value;
+    isInstance = isInstance && "sampleName" in value;
+    isInstance = isInstance && "regexPatternMatch" in value;
+    return isInstance;
+}
+exports.instanceOfFileNameMatch = instanceOfFileNameMatch;
+function FileNameMatchFromJSON(json) {
+    return FileNameMatchFromJSONTyped(json, false);
+}
+exports.FileNameMatchFromJSON = FileNameMatchFromJSON;
+function FileNameMatchFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'fileName': json['fileName'],
+        'sampleName': json['sampleName'],
+        'regexPatternMatch': json['regexPatternMatch'],
+    };
+}
+exports.FileNameMatchFromJSONTyped = FileNameMatchFromJSONTyped;
+function FileNameMatchToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'fileName': value.fileName,
+        'sampleName': value.sampleName,
+        'regexPatternMatch': value.regexPatternMatch,
+    };
+}
+exports.FileNameMatchToJSON = FileNameMatchToJSON;

package/dist/models/ProjectUser.d.ts

@@ -46,6 +46,12 @@ export interface ProjectUser {
      * @memberof ProjectUser
      */
     email: string;
+    /**
+     *
+     * @type {string}
+     * @memberof ProjectUser
+     */
+    jobTitle: string;
     /**
      *
      * @type {ProjectRole}

package/dist/models/ProjectUser.js

@@ -25,6 +25,7 @@ function instanceOfProjectUser(value) {
     isInstance = isInstance && "organization" in value;
     isInstance = isInstance && "department" in value;
     isInstance = isInstance && "email" in value;
+    isInstance = isInstance && "jobTitle" in value;
     isInstance = isInstance && "role" in value;
     return isInstance;
 }
@@ -43,6 +44,7 @@ function ProjectUserFromJSONTyped(json, ignoreDiscriminator) {
         'organization': json['organization'],
         'department': json['department'],
         'email': json['email'],
+        'jobTitle': json['jobTitle'],
         'role': (0, ProjectRole_1.ProjectRoleFromJSON)(json['role']),
     };
 }
@@ -60,6 +62,7 @@ function ProjectUserToJSON(value) {
         'organization': value.organization,
         'department': value.department,
         'email': value.email,
+        'jobTitle': value.jobTitle,
         'role': (0, ProjectRole_1.ProjectRoleToJSON)(value.role),
     };
 }

package/dist/models/SampleSheets.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface SampleSheets
+ */
+export interface SampleSheets {
+    /**
+     * Written to samplesheet.csv, available as ds.samplesheet in preprocess
+     * @type {string}
+     * @memberof SampleSheets
+     */
+    samples?: string;
+    /**
+     * Written to files.csv, available as ds.files in preprocess
+     * @type {string}
+     * @memberof SampleSheets
+     */
+    files?: string;
+}
+/**
+ * Check if a given object implements the SampleSheets interface.
+ */
+export declare function instanceOfSampleSheets(value: object): boolean;
+export declare function SampleSheetsFromJSON(json: any): SampleSheets;
+export declare function SampleSheetsFromJSONTyped(json: any, ignoreDiscriminator: boolean): SampleSheets;
+export declare function SampleSheetsToJSON(value?: SampleSheets | null): any;

package/dist/models/SampleSheets.js

@@ -0,0 +1,52 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.SampleSheetsToJSON = exports.SampleSheetsFromJSONTyped = exports.SampleSheetsFromJSON = exports.instanceOfSampleSheets = void 0;
+const runtime_1 = require("../runtime");
+/**
+ * Check if a given object implements the SampleSheets interface.
+ */
+function instanceOfSampleSheets(value) {
+    let isInstance = true;
+    return isInstance;
+}
+exports.instanceOfSampleSheets = instanceOfSampleSheets;
+function SampleSheetsFromJSON(json) {
+    return SampleSheetsFromJSONTyped(json, false);
+}
+exports.SampleSheetsFromJSON = SampleSheetsFromJSON;
+function SampleSheetsFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'samples': !(0, runtime_1.exists)(json, 'samples') ? undefined : json['samples'],
+        'files': !(0, runtime_1.exists)(json, 'files') ? undefined : json['files'],
+    };
+}
+exports.SampleSheetsFromJSONTyped = SampleSheetsFromJSONTyped;
+function SampleSheetsToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'samples': value.samples,
+        'files': value.files,
+    };
+}
+exports.SampleSheetsToJSON = SampleSheetsToJSON;

package/dist/models/User.d.ts

@@ -39,6 +39,12 @@ export interface User {
      * @memberof User
      */
     department: string;
+    /**
+     *
+     * @type {string}
+     * @memberof User
+     */
+    jobTitle: string;
 }
 /**
  * Check if a given object implements the User interface.

package/dist/models/User.js

@@ -23,6 +23,7 @@ function instanceOfUser(value) {
     isInstance = isInstance && "username" in value;
     isInstance = isInstance && "organization" in value;
     isInstance = isInstance && "department" in value;
+    isInstance = isInstance && "jobTitle" in value;
     return isInstance;
 }
 exports.instanceOfUser = instanceOfUser;
@@ -39,6 +40,7 @@ function UserFromJSONTyped(json, ignoreDiscriminator) {
         'username': json['username'],
         'organization': json['organization'],
         'department': json['department'],
+        'jobTitle': json['jobTitle'],
     };
 }
 exports.UserFromJSONTyped = UserFromJSONTyped;
@@ -54,6 +56,7 @@ function UserToJSON(value) {
         'username': value.username,
         'organization': value.organization,
         'department': value.department,
+        'jobTitle': value.jobTitle,
     };
 }
 exports.UserToJSON = UserToJSON;

package/dist/models/ValidateFileNamePatternsRequest.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface ValidateFileNamePatternsRequest
+ */
+export interface ValidateFileNamePatternsRequest {
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof ValidateFileNamePatternsRequest
+     */
+    fileNames: Array<string>;
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof ValidateFileNamePatternsRequest
+     */
+    fileNamePatterns: Array<string>;
+}
+/**
+ * Check if a given object implements the ValidateFileNamePatternsRequest interface.
+ */
+export declare function instanceOfValidateFileNamePatternsRequest(value: object): boolean;
+export declare function ValidateFileNamePatternsRequestFromJSON(json: any): ValidateFileNamePatternsRequest;
+export declare function ValidateFileNamePatternsRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): ValidateFileNamePatternsRequest;
+export declare function ValidateFileNamePatternsRequestToJSON(value?: ValidateFileNamePatternsRequest | null): any;

package/dist/models/ValidateFileNamePatternsRequest.js

@@ -0,0 +1,53 @@
+"use strict";
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ValidateFileNamePatternsRequestToJSON = exports.ValidateFileNamePatternsRequestFromJSONTyped = exports.ValidateFileNamePatternsRequestFromJSON = exports.instanceOfValidateFileNamePatternsRequest = void 0;
+/**
+ * Check if a given object implements the ValidateFileNamePatternsRequest interface.
+ */
+function instanceOfValidateFileNamePatternsRequest(value) {
+    let isInstance = true;
+    isInstance = isInstance && "fileNames" in value;
+    isInstance = isInstance && "fileNamePatterns" in value;
+    return isInstance;
+}
+exports.instanceOfValidateFileNamePatternsRequest = instanceOfValidateFileNamePatternsRequest;
+function ValidateFileNamePatternsRequestFromJSON(json) {
+    return ValidateFileNamePatternsRequestFromJSONTyped(json, false);
+}
+exports.ValidateFileNamePatternsRequestFromJSON = ValidateFileNamePatternsRequestFromJSON;
+function ValidateFileNamePatternsRequestFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'fileNames': json['fileNames'],
+        'fileNamePatterns': json['fileNamePatterns'],
+    };
+}
+exports.ValidateFileNamePatternsRequestFromJSONTyped = ValidateFileNamePatternsRequestFromJSONTyped;
+function ValidateFileNamePatternsRequestToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'fileNames': value.fileNames,
+        'fileNamePatterns': value.fileNamePatterns,
+    };
+}
+exports.ValidateFileNamePatternsRequestToJSON = ValidateFileNamePatternsRequestToJSON;

package/dist/models/index.d.ts

@@ -49,6 +49,7 @@ export * from './Executor';
 export * from './FeatureFlags';
 export * from './FileEntry';
 export * from './FileMappingRule';
+export * from './FileNameMatch';
 export * from './FileNamePattern';
 export * from './FileRequirements';
 export * from './FormSchema';
@@ -116,6 +117,7 @@ export * from './ResourcesInfo';
 export * from './RunAnalysisRequest';
 export * from './Sample';
 export * from './SampleRequest';
+export * from './SampleSheets';
 export * from './ServiceConnection';
 export * from './SetUserProjectRoleRequest';
 export * from './SftpCredentials';
@@ -140,4 +142,5 @@ export * from './User';
 export * from './UserDetail';
 export * from './UserProjectAssignment';
 export * from './UserSettings';
+export * from './ValidateFileNamePatternsRequest';
 export * from './ValidateFileRequirementsRequest';

package/dist/models/index.js

@@ -67,6 +67,7 @@ __exportStar(require("./Executor"), exports);
 __exportStar(require("./FeatureFlags"), exports);
 __exportStar(require("./FileEntry"), exports);
 __exportStar(require("./FileMappingRule"), exports);
+__exportStar(require("./FileNameMatch"), exports);
 __exportStar(require("./FileNamePattern"), exports);
 __exportStar(require("./FileRequirements"), exports);
 __exportStar(require("./FormSchema"), exports);
@@ -134,6 +135,7 @@ __exportStar(require("./ResourcesInfo"), exports);
 __exportStar(require("./RunAnalysisRequest"), exports);
 __exportStar(require("./Sample"), exports);
 __exportStar(require("./SampleRequest"), exports);
+__exportStar(require("./SampleSheets"), exports);
 __exportStar(require("./ServiceConnection"), exports);
 __exportStar(require("./SetUserProjectRoleRequest"), exports);
 __exportStar(require("./SftpCredentials"), exports);
@@ -158,4 +160,5 @@ __exportStar(require("./User"), exports);
 __exportStar(require("./UserDetail"), exports);
 __exportStar(require("./UserProjectAssignment"), exports);
 __exportStar(require("./UserSettings"), exports);
+__exportStar(require("./ValidateFileNamePatternsRequest"), exports);
 __exportStar(require("./ValidateFileRequirementsRequest"), exports);

package/dist/runtime.js

@@ -23,7 +23,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.TextApiResponse = exports.BlobApiResponse = exports.VoidApiResponse = exports.JSONApiResponse = exports.canConsumeForm = exports.mapValues = exports.querystring = exports.exists = exports.COLLECTION_FORMATS = exports.RequiredError = exports.FetchError = exports.ResponseError = exports.BaseAPI = exports.DefaultConfig = exports.Configuration = exports.BASE_PATH = void 0;
-exports.BASE_PATH = "http://localhost:8080/api".replace(/\/+$/, "");
+exports.BASE_PATH = "https://dev.cirro.bio/api".replace(/\/+$/, "");
 class Configuration {
     constructor(configuration = {}) {
         this.configuration = configuration;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cirrobio/api-client",
-  "version": "0.10.4",
+  "version": "0.10.5",
   "description": "API client for Cirro",
   "author": "CirroBio",
   "repository": {