@cirrobio/api-client 0.1.5 → 0.1.7

package/README.md

@@ -36,7 +36,7 @@ navigate to the folder of your consuming project and run one of the following co
 _published:_
 
 ```
-npm install @cirrobio/api-client@0.1.5 --save
+npm install @cirrobio/api-client@0.1.7 --save
 ```
 
 _unPublished (not recommended):_

package/dist/apis/DatasetsApi.d.ts

@@ -22,6 +22,8 @@ export interface GetDatasetRequest {
 export interface GetDatasetManifestRequest {
     datasetId: string;
     projectId: string;
+    fileOffset: number;
+    fileLimit: number;
 }
 export interface GetDatasetsRequest {
     projectId: string;

package/dist/apis/DatasetsApi.js

@@ -205,7 +205,19 @@ var DatasetsApi = /** @class */ (function (_super) {
                         if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
                             throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling getDatasetManifest.');
                         }
+                        if (requestParameters.fileOffset === null || requestParameters.fileOffset === undefined) {
+                            throw new runtime.RequiredError('fileOffset', 'Required parameter requestParameters.fileOffset was null or undefined when calling getDatasetManifest.');
+                        }
+                        if (requestParameters.fileLimit === null || requestParameters.fileLimit === undefined) {
+                            throw new runtime.RequiredError('fileLimit', 'Required parameter requestParameters.fileLimit was null or undefined when calling getDatasetManifest.');
+                        }
                         queryParameters = {};
+                        if (requestParameters.fileOffset !== undefined) {
+                            queryParameters['fileOffset'] = requestParameters.fileOffset;
+                        }
+                        if (requestParameters.fileLimit !== undefined) {
+                            queryParameters['fileLimit'] = requestParameters.fileLimit;
+                        }
                         headerParameters = {};
                         if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
                         token = this.configuration.accessToken;

package/dist/models/DatasetAssetsManifest.d.ts

@@ -30,6 +30,12 @@ export interface DatasetAssetsManifest {
      * @memberof DatasetAssetsManifest
      */
     files?: Array<FileEntry>;
+    /**
+     * Total number of files in the dataset, used for pagination
+     * @type {number}
+     * @memberof DatasetAssetsManifest
+     */
+    totalFiles?: number;
     /**
      * List of viz to render for the dataset
      * @type {Array<DatasetViz>}

package/dist/models/DatasetAssetsManifest.js

@@ -37,6 +37,7 @@ function DatasetAssetsManifestFromJSONTyped(json, ignoreDiscriminator) {
     return {
         'domain': !(0, runtime_1.exists)(json, 'domain') ? undefined : json['domain'],
         'files': !(0, runtime_1.exists)(json, 'files') ? undefined : (json['files'].map(FileEntry_1.FileEntryFromJSON)),
+        'totalFiles': !(0, runtime_1.exists)(json, 'totalFiles') ? undefined : json['totalFiles'],
         'viz': !(0, runtime_1.exists)(json, 'viz') ? undefined : (json['viz'].map(DatasetViz_1.DatasetVizFromJSON)),
         'tables': !(0, runtime_1.exists)(json, 'tables') ? undefined : (json['tables'].map(Table_1.TableFromJSON)),
     };
@@ -52,6 +53,7 @@ function DatasetAssetsManifestToJSON(value) {
     return {
         'domain': value.domain,
         'files': value.files === undefined ? undefined : (value.files.map(FileEntry_1.FileEntryToJSON)),
+        'totalFiles': value.totalFiles,
         'viz': value.viz === undefined ? undefined : (value.viz.map(DatasetViz_1.DatasetVizToJSON)),
         'tables': value.tables === undefined ? undefined : (value.tables.map(Table_1.TableToJSON)),
     };

package/dist/models/UpdateUserRequest.d.ts

@@ -16,37 +16,49 @@
  */
 export interface UpdateUserRequest {
     /**
-     *
+     * Display name of the user
      * @type {string}
      * @memberof UpdateUserRequest
      */
     name: string;
     /**
-     *
+     * Email address of the user
      * @type {string}
      * @memberof UpdateUserRequest
      */
     email: string;
     /**
-     *
+     * Phone number of the user
      * @type {string}
      * @memberof UpdateUserRequest
      */
-    phone: string;
+    phone?: string;
     /**
-     *
+     * Department or lab the user belongs to
      * @type {string}
      * @memberof UpdateUserRequest
      */
-    department: string;
+    department?: string;
     /**
-     *
+     * The organization the user belongs to, only editable by administrators
+     * @type {string}
+     * @memberof UpdateUserRequest
+     */
+    organization?: string;
+    /**
+     * Additional settings for the user
      * @type {{ [key: string]: any; }}
      * @memberof UpdateUserRequest
      */
-    settings: {
+    settings?: {
         [key: string]: any;
     };
+    /**
+     * Groups the user belongs to, only editable by administrators
+     * @type {Array<string>}
+     * @memberof UpdateUserRequest
+     */
+    groups?: Array<string>;
 }
 /**
  * Check if a given object implements the UpdateUserRequest interface.

package/dist/models/UpdateUserRequest.js

@@ -14,6 +14,7 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.UpdateUserRequestToJSON = exports.UpdateUserRequestFromJSONTyped = exports.UpdateUserRequestFromJSON = exports.instanceOfUpdateUserRequest = void 0;
+var runtime_1 = require("../runtime");
 /**
  * Check if a given object implements the UpdateUserRequest interface.
  */
@@ -21,9 +22,6 @@ function instanceOfUpdateUserRequest(value) {
     var isInstance = true;
     isInstance = isInstance && "name" in value;
     isInstance = isInstance && "email" in value;
-    isInstance = isInstance && "phone" in value;
-    isInstance = isInstance && "department" in value;
-    isInstance = isInstance && "settings" in value;
     return isInstance;
 }
 exports.instanceOfUpdateUserRequest = instanceOfUpdateUserRequest;
@@ -38,9 +36,11 @@ function UpdateUserRequestFromJSONTyped(json, ignoreDiscriminator) {
     return {
         'name': json['name'],
         'email': json['email'],
-        'phone': json['phone'],
-        'department': json['department'],
-        'settings': json['settings'],
+        'phone': !(0, runtime_1.exists)(json, 'phone') ? undefined : json['phone'],
+        'department': !(0, runtime_1.exists)(json, 'department') ? undefined : json['department'],
+        'organization': !(0, runtime_1.exists)(json, 'organization') ? undefined : json['organization'],
+        'settings': !(0, runtime_1.exists)(json, 'settings') ? undefined : json['settings'],
+        'groups': !(0, runtime_1.exists)(json, 'groups') ? undefined : json['groups'],
     };
 }
 exports.UpdateUserRequestFromJSONTyped = UpdateUserRequestFromJSONTyped;
@@ -56,7 +56,9 @@ function UpdateUserRequestToJSON(value) {
         'email': value.email,
         'phone': value.phone,
         'department': value.department,
+        'organization': value.organization,
         'settings': value.settings,
+        'groups': value.groups,
     };
 }
 exports.UpdateUserRequestToJSON = UpdateUserRequestToJSON;

package/dist/models/UserDetail.d.ts

@@ -70,6 +70,12 @@ export interface UserDetail {
      * @memberof UserDetail
      */
     projectAssignments: Array<UserProjectAssignment>;
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof UserDetail
+     */
+    groups: Array<string>;
 }
 /**
  * Check if a given object implements the UserDetail interface.

package/dist/models/UserDetail.js

@@ -29,6 +29,7 @@ function instanceOfUserDetail(value) {
     isInstance = isInstance && "department" in value;
     isInstance = isInstance && "invitedBy" in value;
     isInstance = isInstance && "projectAssignments" in value;
+    isInstance = isInstance && "groups" in value;
     return isInstance;
 }
 exports.instanceOfUserDetail = instanceOfUserDetail;
@@ -50,6 +51,7 @@ function UserDetailFromJSONTyped(json, ignoreDiscriminator) {
         'invitedBy': json['invitedBy'],
         'signUpTime': !(0, runtime_1.exists)(json, 'signUpTime') ? undefined : (json['signUpTime'] === null ? null : new Date(json['signUpTime'])),
         'projectAssignments': (json['projectAssignments'].map(UserProjectAssignment_1.UserProjectAssignmentFromJSON)),
+        'groups': json['groups'],
     };
 }
 exports.UserDetailFromJSONTyped = UserDetailFromJSONTyped;
@@ -70,6 +72,7 @@ function UserDetailToJSON(value) {
         'invitedBy': value.invitedBy,
         'signUpTime': value.signUpTime === undefined ? undefined : (value.signUpTime === null ? null : value.signUpTime.toISOString()),
         'projectAssignments': (value.projectAssignments.map(UserProjectAssignment_1.UserProjectAssignmentToJSON)),
+        'groups': value.groups,
     };
 }
 exports.UserDetailToJSON = UserDetailToJSON;

package/dist/runtime.js

@@ -76,7 +76,7 @@ var __generator = (this && this.__generator) || function (thisArg, body) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.TextApiResponse = exports.BlobApiResponse = exports.VoidApiResponse = exports.JSONApiResponse = exports.canConsumeForm = exports.mapValues = exports.querystring = exports.exists = exports.COLLECTION_FORMATS = exports.RequiredError = exports.FetchError = exports.ResponseError = exports.BaseAPI = exports.DefaultConfig = exports.Configuration = exports.BASE_PATH = void 0;
-exports.BASE_PATH = "https://api.cirro.bio".replace(/\/+$/, "");
+exports.BASE_PATH = "http://localhost:8080/api".replace(/\/+$/, "");
 var Configuration = /** @class */ (function () {
     function Configuration(configuration) {
         if (configuration === void 0) { configuration = {}; }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cirrobio/api-client",
-  "version": "0.1.5",
+  "version": "0.1.7",
   "description": "API client for Cirro",
   "author": "CirroBio",
   "repository": {

package/src/apis/DatasetsApi.ts

@@ -56,6 +56,8 @@ export interface GetDatasetRequest {
 export interface GetDatasetManifestRequest {
     datasetId: string;
     projectId: string;
+    fileOffset: number;
+    fileLimit: number;
 }
 
 export interface GetDatasetsRequest {
@@ -200,8 +202,24 @@ export class DatasetsApi extends runtime.BaseAPI {
             throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling getDatasetManifest.');
         }
 
+        if (requestParameters.fileOffset === null || requestParameters.fileOffset === undefined) {
+            throw new runtime.RequiredError('fileOffset','Required parameter requestParameters.fileOffset was null or undefined when calling getDatasetManifest.');
+        }
+
+        if (requestParameters.fileLimit === null || requestParameters.fileLimit === undefined) {
+            throw new runtime.RequiredError('fileLimit','Required parameter requestParameters.fileLimit was null or undefined when calling getDatasetManifest.');
+        }
+
         const queryParameters: any = {};
 
+        if (requestParameters.fileOffset !== undefined) {
+            queryParameters['fileOffset'] = requestParameters.fileOffset;
+        }
+
+        if (requestParameters.fileLimit !== undefined) {
+            queryParameters['fileLimit'] = requestParameters.fileLimit;
+        }
+
         const headerParameters: runtime.HTTPHeaders = {};
 
         if (this.configuration && this.configuration.accessToken) {

package/src/models/DatasetAssetsManifest.ts

@@ -50,6 +50,12 @@ export interface DatasetAssetsManifest {
      * @memberof DatasetAssetsManifest
      */
     files?: Array<FileEntry>;
+    /**
+     * Total number of files in the dataset, used for pagination
+     * @type {number}
+     * @memberof DatasetAssetsManifest
+     */
+    totalFiles?: number;
     /**
      * List of viz to render for the dataset
      * @type {Array<DatasetViz>}
@@ -85,6 +91,7 @@ export function DatasetAssetsManifestFromJSONTyped(json: any, ignoreDiscriminato
         
         'domain': !exists(json, 'domain') ? undefined : json['domain'],
         'files': !exists(json, 'files') ? undefined : ((json['files'] as Array<any>).map(FileEntryFromJSON)),
+        'totalFiles': !exists(json, 'totalFiles') ? undefined : json['totalFiles'],
         'viz': !exists(json, 'viz') ? undefined : ((json['viz'] as Array<any>).map(DatasetVizFromJSON)),
         'tables': !exists(json, 'tables') ? undefined : ((json['tables'] as Array<any>).map(TableFromJSON)),
     };
@@ -101,6 +108,7 @@ export function DatasetAssetsManifestToJSON(value?: DatasetAssetsManifest | null
         
         'domain': value.domain,
         'files': value.files === undefined ? undefined : ((value.files as Array<any>).map(FileEntryToJSON)),
+        'totalFiles': value.totalFiles,
         'viz': value.viz === undefined ? undefined : ((value.viz as Array<any>).map(DatasetVizToJSON)),
         'tables': value.tables === undefined ? undefined : ((value.tables as Array<any>).map(TableToJSON)),
     };

package/src/models/UpdateUserRequest.ts

@@ -20,35 +20,47 @@ import { exists, mapValues } from '../runtime';
  */
 export interface UpdateUserRequest {
     /**
-     * 
+     * Display name of the user
      * @type {string}
      * @memberof UpdateUserRequest
      */
     name: string;
     /**
-     * 
+     * Email address of the user
      * @type {string}
      * @memberof UpdateUserRequest
      */
     email: string;
     /**
-     * 
+     * Phone number of the user
      * @type {string}
      * @memberof UpdateUserRequest
      */
-    phone: string;
+    phone?: string;
     /**
-     * 
+     * Department or lab the user belongs to
      * @type {string}
      * @memberof UpdateUserRequest
      */
-    department: string;
+    department?: string;
     /**
-     * 
+     * The organization the user belongs to, only editable by administrators
+     * @type {string}
+     * @memberof UpdateUserRequest
+     */
+    organization?: string;
+    /**
+     * Additional settings for the user
      * @type {{ [key: string]: any; }}
      * @memberof UpdateUserRequest
      */
-    settings: { [key: string]: any; };
+    settings?: { [key: string]: any; };
+    /**
+     * Groups the user belongs to, only editable by administrators
+     * @type {Array<string>}
+     * @memberof UpdateUserRequest
+     */
+    groups?: Array<string>;
 }
 
 /**
@@ -58,9 +70,6 @@ export function instanceOfUpdateUserRequest(value: object): boolean {
     let isInstance = true;
     isInstance = isInstance && "name" in value;
     isInstance = isInstance && "email" in value;
-    isInstance = isInstance && "phone" in value;
-    isInstance = isInstance && "department" in value;
-    isInstance = isInstance && "settings" in value;
 
     return isInstance;
 }
@@ -77,9 +86,11 @@ export function UpdateUserRequestFromJSONTyped(json: any, ignoreDiscriminator: b
         
         'name': json['name'],
         'email': json['email'],
-        'phone': json['phone'],
-        'department': json['department'],
-        'settings': json['settings'],
+        'phone': !exists(json, 'phone') ? undefined : json['phone'],
+        'department': !exists(json, 'department') ? undefined : json['department'],
+        'organization': !exists(json, 'organization') ? undefined : json['organization'],
+        'settings': !exists(json, 'settings') ? undefined : json['settings'],
+        'groups': !exists(json, 'groups') ? undefined : json['groups'],
     };
 }
 
@@ -96,7 +107,9 @@ export function UpdateUserRequestToJSON(value?: UpdateUserRequest | null): any {
         'email': value.email,
         'phone': value.phone,
         'department': value.department,
+        'organization': value.organization,
         'settings': value.settings,
+        'groups': value.groups,
     };
 }
 

package/src/models/UserDetail.ts

@@ -80,6 +80,12 @@ export interface UserDetail {
      * @memberof UserDetail
      */
     projectAssignments: Array<UserProjectAssignment>;
+    /**
+     * 
+     * @type {Array<string>}
+     * @memberof UserDetail
+     */
+    groups: Array<string>;
 }
 
 /**
@@ -95,6 +101,7 @@ export function instanceOfUserDetail(value: object): boolean {
     isInstance = isInstance && "department" in value;
     isInstance = isInstance && "invitedBy" in value;
     isInstance = isInstance && "projectAssignments" in value;
+    isInstance = isInstance && "groups" in value;
 
     return isInstance;
 }
@@ -118,6 +125,7 @@ export function UserDetailFromJSONTyped(json: any, ignoreDiscriminator: boolean)
         'invitedBy': json['invitedBy'],
         'signUpTime': !exists(json, 'signUpTime') ? undefined : (json['signUpTime'] === null ? null : new Date(json['signUpTime'])),
         'projectAssignments': ((json['projectAssignments'] as Array<any>).map(UserProjectAssignmentFromJSON)),
+        'groups': json['groups'],
     };
 }
 
@@ -139,6 +147,7 @@ export function UserDetailToJSON(value?: UserDetail | null): any {
         'invitedBy': value.invitedBy,
         'signUpTime': value.signUpTime === undefined ? undefined : (value.signUpTime === null ? null : value.signUpTime.toISOString()),
         'projectAssignments': ((value.projectAssignments as Array<any>).map(UserProjectAssignmentToJSON)),
+        'groups': value.groups,
     };
 }
 

package/src/runtime.ts

@@ -13,7 +13,7 @@
  */
 
 
-export const BASE_PATH = "https://api.cirro.bio".replace(/\/+$/, "");
+export const BASE_PATH = "http://localhost:8080/api".replace(/\/+$/, "");
 
 export interface ConfigurationParameters {
     basePath?: string; // override base path