@cirrobio/api-client 0.0.29-alpha → 0.0.31-alpha

package/src/models/{DatasetFile.ts → FileEntry.ts}

@@ -16,43 +16,43 @@ import { exists, mapValues } from '../runtime';
 /**
  * 
  * @export
- * @interface DatasetFile
+ * @interface FileEntry
  */
-export interface DatasetFile {
+export interface FileEntry {
     /**
      * Relative path to file
      * @type {string}
-     * @memberof DatasetFile
+     * @memberof FileEntry
      */
     path?: string;
     /**
      * File size (in bytes)
      * @type {number}
-     * @memberof DatasetFile
+     * @memberof FileEntry
      */
     size?: number;
     /**
      * Metadata associated with the file
      * @type {{ [key: string]: string; }}
-     * @memberof DatasetFile
+     * @memberof FileEntry
      */
     metadata?: { [key: string]: string; };
 }
 
 /**
- * Check if a given object implements the DatasetFile interface.
+ * Check if a given object implements the FileEntry interface.
  */
-export function instanceOfDatasetFile(value: object): boolean {
+export function instanceOfFileEntry(value: object): boolean {
     let isInstance = true;
 
     return isInstance;
 }
 
-export function DatasetFileFromJSON(json: any): DatasetFile {
-    return DatasetFileFromJSONTyped(json, false);
+export function FileEntryFromJSON(json: any): FileEntry {
+    return FileEntryFromJSONTyped(json, false);
 }
 
-export function DatasetFileFromJSONTyped(json: any, ignoreDiscriminator: boolean): DatasetFile {
+export function FileEntryFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileEntry {
     if ((json === undefined) || (json === null)) {
         return json;
     }
@@ -64,7 +64,7 @@ export function DatasetFileFromJSONTyped(json: any, ignoreDiscriminator: boolean
     };
 }
 
-export function DatasetFileToJSON(value?: DatasetFile | null): any {
+export function FileEntryToJSON(value?: FileEntry | null): any {
     if (value === undefined) {
         return undefined;
     }

package/src/models/PipelineCode.ts

@@ -21,7 +21,7 @@ import {
 } from './RepositoryType';
 
 /**
- * Used to describe the pipeline analysis code
+ * Used to describe the pipeline analysis code, not required for ingest processes
  * @export
  * @interface PipelineCode
  */
@@ -37,7 +37,7 @@ export interface PipelineCode {
      * @type {string}
      * @memberof PipelineCode
      */
-    version?: string;
+    version: string;
     /**
      * 
      * @type {RepositoryType}
@@ -49,7 +49,7 @@ export interface PipelineCode {
      * @type {string}
      * @memberof PipelineCode
      */
-    entryPoint?: string;
+    entryPoint: string;
 }
 
 /**
@@ -58,6 +58,8 @@ export interface PipelineCode {
 export function instanceOfPipelineCode(value: object): boolean {
     let isInstance = true;
     isInstance = isInstance && "repositoryPath" in value;
+    isInstance = isInstance && "version" in value;
+    isInstance = isInstance && "entryPoint" in value;
 
     return isInstance;
 }
@@ -73,9 +75,9 @@ export function PipelineCodeFromJSONTyped(json: any, ignoreDiscriminator: boolea
     return {
         
         'repositoryPath': json['repositoryPath'],
-        'version': !exists(json, 'version') ? undefined : json['version'],
+        'version': json['version'],
         'repositoryType': !exists(json, 'repositoryType') ? undefined : RepositoryTypeFromJSON(json['repositoryType']),
-        'entryPoint': !exists(json, 'entryPoint') ? undefined : json['entryPoint'],
+        'entryPoint': json['entryPoint'],
     };
 }
 

package/src/models/PortalErrorResponse.ts

@@ -0,0 +1,100 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+import type { ErrorMessage } from './ErrorMessage';
+import {
+    ErrorMessageFromJSON,
+    ErrorMessageFromJSONTyped,
+    ErrorMessageToJSON,
+} from './ErrorMessage';
+
+/**
+ * 
+ * @export
+ * @interface PortalErrorResponse
+ */
+export interface PortalErrorResponse {
+    /**
+     * 
+     * @type {number}
+     * @memberof PortalErrorResponse
+     */
+    statusCode: number;
+    /**
+     * 
+     * @type {string}
+     * @memberof PortalErrorResponse
+     */
+    errorCode: string;
+    /**
+     * 
+     * @type {string}
+     * @memberof PortalErrorResponse
+     */
+    errorDetail: string;
+    /**
+     * 
+     * @type {Array<ErrorMessage>}
+     * @memberof PortalErrorResponse
+     */
+    errors: Array<ErrorMessage>;
+}
+
+/**
+ * Check if a given object implements the PortalErrorResponse interface.
+ */
+export function instanceOfPortalErrorResponse(value: object): boolean {
+    let isInstance = true;
+    isInstance = isInstance && "statusCode" in value;
+    isInstance = isInstance && "errorCode" in value;
+    isInstance = isInstance && "errorDetail" in value;
+    isInstance = isInstance && "errors" in value;
+
+    return isInstance;
+}
+
+export function PortalErrorResponseFromJSON(json: any): PortalErrorResponse {
+    return PortalErrorResponseFromJSONTyped(json, false);
+}
+
+export function PortalErrorResponseFromJSONTyped(json: any, ignoreDiscriminator: boolean): PortalErrorResponse {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'statusCode': json['statusCode'],
+        'errorCode': json['errorCode'],
+        'errorDetail': json['errorDetail'],
+        'errors': ((json['errors'] as Array<any>).map(ErrorMessageFromJSON)),
+    };
+}
+
+export function PortalErrorResponseToJSON(value?: PortalErrorResponse | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'statusCode': value.statusCode,
+        'errorCode': value.errorCode,
+        'errorDetail': value.errorDetail,
+        'errors': ((value.errors as Array<any>).map(ErrorMessageToJSON)),
+    };
+}
+

package/src/models/Process.ts

@@ -43,7 +43,7 @@ export interface Process {
      * @type {string}
      * @memberof Process
      */
-    description: string;
+    description?: string;
     /**
      * 
      * @type {Executor}
@@ -61,7 +61,7 @@ export interface Process {
      * @type {string}
      * @memberof Process
      */
-    fileRequirementsMessage?: string | null;
+    fileRequirementsMessage?: string;
     /**
      * IDs of pipelines that can be ran downstream
      * @type {Array<string>}
@@ -69,7 +69,7 @@ export interface Process {
      */
     childProcessIds?: Array<string>;
     /**
-     * IDs of pipelines that can be ran upstream
+     * IDs of pipelines that can run this pipeline
      * @type {Array<string>}
      * @memberof Process
      */
@@ -94,7 +94,6 @@ export interface Process {
 export function instanceOfProcess(value: object): boolean {
     let isInstance = true;
     isInstance = isInstance && "id" in value;
-    isInstance = isInstance && "description" in value;
 
     return isInstance;
 }
@@ -111,7 +110,7 @@ export function ProcessFromJSONTyped(json: any, ignoreDiscriminator: boolean): P
         
         'id': json['id'],
         'name': !exists(json, 'name') ? undefined : json['name'],
-        'description': json['description'],
+        'description': !exists(json, 'description') ? undefined : json['description'],
         'executor': !exists(json, 'executor') ? undefined : ExecutorFromJSON(json['executor']),
         'documentationUrl': !exists(json, 'documentationUrl') ? undefined : json['documentationUrl'],
         'fileRequirementsMessage': !exists(json, 'fileRequirementsMessage') ? undefined : json['fileRequirementsMessage'],

package/src/models/ProcessDetail.ts

@@ -25,12 +25,12 @@ import {
     ExecutorFromJSONTyped,
     ExecutorToJSON,
 } from './Executor';
-import type { ProcessDetailAllOfPipelineCode } from './ProcessDetailAllOfPipelineCode';
+import type { PipelineCode } from './PipelineCode';
 import {
-    ProcessDetailAllOfPipelineCodeFromJSON,
-    ProcessDetailAllOfPipelineCodeFromJSONTyped,
-    ProcessDetailAllOfPipelineCodeToJSON,
-} from './ProcessDetailAllOfPipelineCode';
+    PipelineCodeFromJSON,
+    PipelineCodeFromJSONTyped,
+    PipelineCodeToJSON,
+} from './PipelineCode';
 
 /**
  * 
@@ -67,13 +67,13 @@ export interface ProcessDetail {
      * @type {string}
      * @memberof ProcessDetail
      */
-    documentationUrl: string;
+    documentationUrl?: string | null;
     /**
      * 
      * @type {string}
      * @memberof ProcessDetail
      */
-    fileRequirementsMessage: string;
+    fileRequirementsMessage?: string | null;
     /**
      * 
      * @type {Array<string>}
@@ -91,7 +91,7 @@ export interface ProcessDetail {
      * @type {string}
      * @memberof ProcessDetail
      */
-    owner: string;
+    owner?: string;
     /**
      * 
      * @type {Array<string>}
@@ -100,10 +100,10 @@ export interface ProcessDetail {
     linkedProjectIds: Array<string>;
     /**
      * 
-     * @type {ProcessDetailAllOfPipelineCode}
+     * @type {PipelineCode}
      * @memberof ProcessDetail
      */
-    pipelineCode: ProcessDetailAllOfPipelineCode;
+    pipelineCode?: PipelineCode | null;
     /**
      * 
      * @type {CustomPipelineSettings}
@@ -111,11 +111,11 @@ export interface ProcessDetail {
      */
     customSettings: CustomPipelineSettings;
     /**
-     * 
+     * Whether the process is marked for removal
      * @type {boolean}
      * @memberof ProcessDetail
      */
-    isArchived: boolean;
+    isArchived?: boolean;
 }
 
 /**
@@ -127,15 +127,10 @@ export function instanceOfProcessDetail(value: object): boolean {
     isInstance = isInstance && "name" in value;
     isInstance = isInstance && "description" in value;
     isInstance = isInstance && "executor" in value;
-    isInstance = isInstance && "documentationUrl" in value;
-    isInstance = isInstance && "fileRequirementsMessage" in value;
     isInstance = isInstance && "childProcessIds" in value;
     isInstance = isInstance && "parentProcessIds" in value;
-    isInstance = isInstance && "owner" in value;
     isInstance = isInstance && "linkedProjectIds" in value;
-    isInstance = isInstance && "pipelineCode" in value;
     isInstance = isInstance && "customSettings" in value;
-    isInstance = isInstance && "isArchived" in value;
 
     return isInstance;
 }
@@ -154,15 +149,15 @@ export function ProcessDetailFromJSONTyped(json: any, ignoreDiscriminator: boole
         'name': json['name'],
         'description': json['description'],
         'executor': ExecutorFromJSON(json['executor']),
-        'documentationUrl': json['documentationUrl'],
-        'fileRequirementsMessage': json['fileRequirementsMessage'],
+        'documentationUrl': !exists(json, 'documentationUrl') ? undefined : json['documentationUrl'],
+        'fileRequirementsMessage': !exists(json, 'fileRequirementsMessage') ? undefined : json['fileRequirementsMessage'],
         'childProcessIds': json['childProcessIds'],
         'parentProcessIds': json['parentProcessIds'],
-        'owner': json['owner'],
+        'owner': !exists(json, 'owner') ? undefined : json['owner'],
         'linkedProjectIds': json['linkedProjectIds'],
-        'pipelineCode': ProcessDetailAllOfPipelineCodeFromJSON(json['pipelineCode']),
+        'pipelineCode': !exists(json, 'pipelineCode') ? undefined : PipelineCodeFromJSON(json['pipelineCode']),
         'customSettings': CustomPipelineSettingsFromJSON(json['customSettings']),
-        'isArchived': json['isArchived'],
+        'isArchived': !exists(json, 'isArchived') ? undefined : json['isArchived'],
     };
 }
 
@@ -185,7 +180,7 @@ export function ProcessDetailToJSON(value?: ProcessDetail | null): any {
         'parentProcessIds': value.parentProcessIds,
         'owner': value.owner,
         'linkedProjectIds': value.linkedProjectIds,
-        'pipelineCode': ProcessDetailAllOfPipelineCodeToJSON(value.pipelineCode),
+        'pipelineCode': PipelineCodeToJSON(value.pipelineCode),
         'customSettings': CustomPipelineSettingsToJSON(value.customSettings),
         'isArchived': value.isArchived,
     };

package/src/models/ProjectRequest.ts

@@ -79,13 +79,13 @@ export interface ProjectRequest {
      * @type {CloudAccount}
      * @memberof ProjectRequest
      */
-    account: CloudAccount | null;
+    account?: CloudAccount | null;
     /**
      * 
      * @type {Array<Tag>}
      * @memberof ProjectRequest
      */
-    tags: Array<Tag> | null;
+    tags?: Array<Tag> | null;
 }
 
 /**
@@ -98,8 +98,6 @@ export function instanceOfProjectRequest(value: object): boolean {
     isInstance = isInstance && "billingAccountId" in value;
     isInstance = isInstance && "settings" in value;
     isInstance = isInstance && "contacts" in value;
-    isInstance = isInstance && "account" in value;
-    isInstance = isInstance && "tags" in value;
 
     return isInstance;
 }
@@ -119,8 +117,8 @@ export function ProjectRequestFromJSONTyped(json: any, ignoreDiscriminator: bool
         'billingAccountId': json['billingAccountId'],
         'settings': ProjectSettingsFromJSON(json['settings']),
         'contacts': ((json['contacts'] as Array<any>).map(ContactFromJSON)),
-        'account': CloudAccountFromJSON(json['account']),
-        'tags': (json['tags'] === null ? null : (json['tags'] as Array<any>).map(TagFromJSON)),
+        'account': !exists(json, 'account') ? undefined : CloudAccountFromJSON(json['account']),
+        'tags': !exists(json, 'tags') ? undefined : (json['tags'] === null ? null : (json['tags'] as Array<any>).map(TagFromJSON)),
     };
 }
 
@@ -139,7 +137,7 @@ export function ProjectRequestToJSON(value?: ProjectRequest | null): any {
         'settings': ProjectSettingsToJSON(value.settings),
         'contacts': ((value.contacts as Array<any>).map(ContactToJSON)),
         'account': CloudAccountToJSON(value.account),
-        'tags': (value.tags === null ? null : (value.tags as Array<any>).map(TagToJSON)),
+        'tags': value.tags === undefined ? undefined : (value.tags === null ? null : (value.tags as Array<any>).map(TagToJSON)),
     };
 }
 

package/src/models/ProjectSettings.ts

@@ -37,7 +37,7 @@ export interface ProjectSettings {
      * @type {BudgetPeriod}
      * @memberof ProjectSettings
      */
-    budgetPeriod: BudgetPeriod;
+    budgetPeriod?: BudgetPeriod;
     /**
      * AMI ID for the DRAGEN compute environment (if enabled)
      * @type {string}
@@ -123,7 +123,6 @@ export interface ProjectSettings {
  */
 export function instanceOfProjectSettings(value: object): boolean {
     let isInstance = true;
-    isInstance = isInstance && "budgetPeriod" in value;
     isInstance = isInstance && "serviceConnections" in value;
 
     return isInstance;
@@ -140,7 +139,7 @@ export function ProjectSettingsFromJSONTyped(json: any, ignoreDiscriminator: boo
     return {
         
         'budgetAmount': !exists(json, 'budgetAmount') ? undefined : json['budgetAmount'],
-        'budgetPeriod': BudgetPeriodFromJSON(json['budgetPeriod']),
+        'budgetPeriod': !exists(json, 'budgetPeriod') ? undefined : BudgetPeriodFromJSON(json['budgetPeriod']),
         'dragenAmi': !exists(json, 'dragenAmi') ? undefined : json['dragenAmi'],
         'enableCompute': !exists(json, 'enableCompute') ? undefined : json['enableCompute'],
         'enableDragen': !exists(json, 'enableDragen') ? undefined : json['enableDragen'],

package/src/models/Reference.ts

@@ -13,6 +13,13 @@
  */
 
 import { exists, mapValues } from '../runtime';
+import type { FileEntry } from './FileEntry';
+import {
+    FileEntryFromJSON,
+    FileEntryFromJSONTyped,
+    FileEntryToJSON,
+} from './FileEntry';
+
 /**
  * 
  * @export
@@ -33,10 +40,10 @@ export interface Reference {
     referenceType: string;
     /**
      * 
-     * @type {Array<string>}
+     * @type {Array<FileEntry>}
      * @memberof Reference
      */
-    files: Array<string>;
+    files: Array<FileEntry>;
     /**
      * 
      * @type {string}
@@ -77,7 +84,7 @@ export function ReferenceFromJSONTyped(json: any, ignoreDiscriminator: boolean):
         
         'name': json['name'],
         'referenceType': json['referenceType'],
-        'files': json['files'],
+        'files': ((json['files'] as Array<any>).map(FileEntryFromJSON)),
         'createdBy': json['createdBy'],
         'createdAt': (new Date(json['createdAt'])),
     };
@@ -94,7 +101,7 @@ export function ReferenceToJSON(value?: Reference | null): any {
         
         'name': value.name,
         'referenceType': value.referenceType,
-        'files': value.files,
+        'files': ((value.files as Array<any>).map(FileEntryToJSON)),
         'createdBy': value.createdBy,
         'createdAt': (value.createdAt.toISOString()),
     };

package/src/models/SyncStatus.ts

@@ -0,0 +1,37 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+/**
+ * Status of last sync
+ * @export
+ * @enum {string}
+ */
+export enum SyncStatus {
+    Successful = 'SUCCESSFUL',
+    Failed = 'FAILED'
+}
+
+
+export function SyncStatusFromJSON(json: any): SyncStatus {
+    return SyncStatusFromJSONTyped(json, false);
+}
+
+export function SyncStatusFromJSONTyped(json: any, ignoreDiscriminator: boolean): SyncStatus {
+    return json as SyncStatus;
+}
+
+export function SyncStatusToJSON(value?: SyncStatus | null): any {
+    return value as any;
+}
+

package/src/models/ValidateFileRequirementsRequest.ts

@@ -21,16 +21,16 @@ import { exists, mapValues } from '../runtime';
 export interface ValidateFileRequirementsRequest {
     /**
      * 
-     * @type {string}
+     * @type {Array<string>}
      * @memberof ValidateFileRequirementsRequest
      */
-    sampleSheet: string;
+    fileNames: Array<string>;
     /**
      * 
-     * @type {Array<string>}
+     * @type {string}
      * @memberof ValidateFileRequirementsRequest
      */
-    fileNames: Array<string>;
+    sampleSheet: string;
 }
 
 /**
@@ -38,8 +38,8 @@ export interface ValidateFileRequirementsRequest {
  */
 export function instanceOfValidateFileRequirementsRequest(value: object): boolean {
     let isInstance = true;
-    isInstance = isInstance && "sampleSheet" in value;
     isInstance = isInstance && "fileNames" in value;
+    isInstance = isInstance && "sampleSheet" in value;
 
     return isInstance;
 }
@@ -54,8 +54,8 @@ export function ValidateFileRequirementsRequestFromJSONTyped(json: any, ignoreDi
     }
     return {
         
-        'sampleSheet': json['sampleSheet'],
         'fileNames': json['fileNames'],
+        'sampleSheet': json['sampleSheet'],
     };
 }
 
@@ -68,8 +68,8 @@ export function ValidateFileRequirementsRequestToJSON(value?: ValidateFileRequir
     }
     return {
         
-        'sampleSheet': value.sampleSheet,
         'fileNames': value.fileNames,
+        'sampleSheet': value.sampleSheet,
     };
 }
 

package/src/models/index.ts

@@ -16,9 +16,10 @@ export * from './DashboardRequest';
 export * from './Dataset';
 export * from './DatasetAssetsManifest';
 export * from './DatasetDetail';
-export * from './DatasetFile';
 export * from './DatasetViz';
+export * from './ErrorMessage';
 export * from './Executor';
+export * from './FileEntry';
 export * from './FileNamePattern';
 export * from './FileRequirements';
 export * from './FormSchema';
@@ -35,9 +36,9 @@ export * from './OpenNotebookInstanceResponse';
 export * from './PaginatedResponseDatasetListDto';
 export * from './PaginatedResponseSampleDto';
 export * from './PipelineCode';
+export * from './PortalErrorResponse';
 export * from './Process';
 export * from './ProcessDetail';
-export * from './ProcessDetailAllOfPipelineCode';
 export * from './Project';
 export * from './ProjectDetail';
 export * from './ProjectMetrics';
@@ -57,6 +58,7 @@ export * from './SetUserProjectRoleRequest';
 export * from './SftpCredentials';
 export * from './Status';
 export * from './StopExecutionResponse';
+export * from './SyncStatus';
 export * from './SystemInfoResponse';
 export * from './Tag';
 export * from './Task';