@cirrobio/api-client 0.0.27-alpha → 0.0.29-alpha

package/src/models/ProcessDetail.ts

@@ -25,6 +25,12 @@ import {
     ExecutorFromJSONTyped,
     ExecutorToJSON,
 } from './Executor';
+import type { ProcessDetailAllOfPipelineCode } from './ProcessDetailAllOfPipelineCode';
+import {
+    ProcessDetailAllOfPipelineCodeFromJSON,
+    ProcessDetailAllOfPipelineCodeFromJSONTyped,
+    ProcessDetailAllOfPipelineCodeToJSON,
+} from './ProcessDetailAllOfPipelineCode';
 
 /**
  * 
@@ -33,7 +39,7 @@ import {
  */
 export interface ProcessDetail {
     /**
-     * Unique ID of the Process
+     * 
      * @type {string}
      * @memberof ProcessDetail
      */
@@ -63,11 +69,11 @@ export interface ProcessDetail {
      */
     documentationUrl: string;
     /**
-     * Description of the files to be uploaded (optional)
+     * 
      * @type {string}
      * @memberof ProcessDetail
      */
-    fileRequirementsMessage?: string;
+    fileRequirementsMessage: string;
     /**
      * 
      * @type {Array<string>}
@@ -92,6 +98,12 @@ export interface ProcessDetail {
      * @memberof ProcessDetail
      */
     linkedProjectIds: Array<string>;
+    /**
+     * 
+     * @type {ProcessDetailAllOfPipelineCode}
+     * @memberof ProcessDetail
+     */
+    pipelineCode: ProcessDetailAllOfPipelineCode;
     /**
      * 
      * @type {CustomPipelineSettings}
@@ -116,10 +128,12 @@ export function instanceOfProcessDetail(value: object): boolean {
     isInstance = isInstance && "description" in value;
     isInstance = isInstance && "executor" in value;
     isInstance = isInstance && "documentationUrl" in value;
+    isInstance = isInstance && "fileRequirementsMessage" in value;
     isInstance = isInstance && "childProcessIds" in value;
     isInstance = isInstance && "parentProcessIds" in value;
     isInstance = isInstance && "owner" in value;
     isInstance = isInstance && "linkedProjectIds" in value;
+    isInstance = isInstance && "pipelineCode" in value;
     isInstance = isInstance && "customSettings" in value;
     isInstance = isInstance && "isArchived" in value;
 
@@ -141,11 +155,12 @@ export function ProcessDetailFromJSONTyped(json: any, ignoreDiscriminator: boole
         'description': json['description'],
         'executor': ExecutorFromJSON(json['executor']),
         'documentationUrl': json['documentationUrl'],
-        'fileRequirementsMessage': !exists(json, 'fileRequirementsMessage') ? undefined : json['fileRequirementsMessage'],
+        'fileRequirementsMessage': json['fileRequirementsMessage'],
         'childProcessIds': json['childProcessIds'],
         'parentProcessIds': json['parentProcessIds'],
         'owner': json['owner'],
         'linkedProjectIds': json['linkedProjectIds'],
+        'pipelineCode': ProcessDetailAllOfPipelineCodeFromJSON(json['pipelineCode']),
         'customSettings': CustomPipelineSettingsFromJSON(json['customSettings']),
         'isArchived': json['isArchived'],
     };
@@ -170,6 +185,7 @@ export function ProcessDetailToJSON(value?: ProcessDetail | null): any {
         'parentProcessIds': value.parentProcessIds,
         'owner': value.owner,
         'linkedProjectIds': value.linkedProjectIds,
+        'pipelineCode': ProcessDetailAllOfPipelineCodeToJSON(value.pipelineCode),
         'customSettings': CustomPipelineSettingsToJSON(value.customSettings),
         'isArchived': value.isArchived,
     };

package/src/models/ProcessDetailAllOfPipelineCode.ts

@@ -0,0 +1,97 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+import { exists, mapValues } from '../runtime';
+import type { RepositoryType } from './RepositoryType';
+import {
+    RepositoryTypeFromJSON,
+    RepositoryTypeFromJSONTyped,
+    RepositoryTypeToJSON,
+} from './RepositoryType';
+
+/**
+ * 
+ * @export
+ * @interface ProcessDetailAllOfPipelineCode
+ */
+export interface ProcessDetailAllOfPipelineCode {
+    /**
+     * GitHub repository which contains the workflow code
+     * @type {string}
+     * @memberof ProcessDetailAllOfPipelineCode
+     */
+    repositoryPath: string;
+    /**
+     * Branch, tag, or commit hash of the pipeline code
+     * @type {string}
+     * @memberof ProcessDetailAllOfPipelineCode
+     */
+    version?: string;
+    /**
+     * 
+     * @type {RepositoryType}
+     * @memberof ProcessDetailAllOfPipelineCode
+     */
+    repositoryType?: RepositoryType;
+    /**
+     * Main script for running the pipeline
+     * @type {string}
+     * @memberof ProcessDetailAllOfPipelineCode
+     */
+    entryPoint?: string;
+}
+
+/**
+ * Check if a given object implements the ProcessDetailAllOfPipelineCode interface.
+ */
+export function instanceOfProcessDetailAllOfPipelineCode(value: object): boolean {
+    let isInstance = true;
+    isInstance = isInstance && "repositoryPath" in value;
+
+    return isInstance;
+}
+
+export function ProcessDetailAllOfPipelineCodeFromJSON(json: any): ProcessDetailAllOfPipelineCode {
+    return ProcessDetailAllOfPipelineCodeFromJSONTyped(json, false);
+}
+
+export function ProcessDetailAllOfPipelineCodeFromJSONTyped(json: any, ignoreDiscriminator: boolean): ProcessDetailAllOfPipelineCode {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        
+        'repositoryPath': json['repositoryPath'],
+        'version': !exists(json, 'version') ? undefined : json['version'],
+        'repositoryType': !exists(json, 'repositoryType') ? undefined : RepositoryTypeFromJSON(json['repositoryType']),
+        'entryPoint': !exists(json, 'entryPoint') ? undefined : json['entryPoint'],
+    };
+}
+
+export function ProcessDetailAllOfPipelineCodeToJSON(value?: ProcessDetailAllOfPipelineCode | null): any {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        
+        'repositoryPath': value.repositoryPath,
+        'version': value.version,
+        'repositoryType': RepositoryTypeToJSON(value.repositoryType),
+        'entryPoint': value.entryPoint,
+    };
+}
+

package/src/models/RepositoryType.ts

@@ -0,0 +1,39 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+
+/**
+ * Type of repository
+ * @export
+ * @enum {string}
+ */
+export enum RepositoryType {
+    None = 'NONE',
+    Aws = 'AWS',
+    GithubPublic = 'GITHUB_PUBLIC',
+    GithubPrivate = 'GITHUB_PRIVATE'
+}
+
+
+export function RepositoryTypeFromJSON(json: any): RepositoryType {
+    return RepositoryTypeFromJSONTyped(json, false);
+}
+
+export function RepositoryTypeFromJSONTyped(json: any, ignoreDiscriminator: boolean): RepositoryType {
+    return json as RepositoryType;
+}
+
+export function RepositoryTypeToJSON(value?: RepositoryType | null): any {
+    return value as any;
+}
+

package/src/models/index.ts

@@ -34,8 +34,10 @@ export * from './NotebookInstanceStatusResponse';
 export * from './OpenNotebookInstanceResponse';
 export * from './PaginatedResponseDatasetListDto';
 export * from './PaginatedResponseSampleDto';
+export * from './PipelineCode';
 export * from './Process';
 export * from './ProcessDetail';
+export * from './ProcessDetailAllOfPipelineCode';
 export * from './Project';
 export * from './ProjectDetail';
 export * from './ProjectMetrics';
@@ -45,6 +47,7 @@ export * from './ProjectSettings';
 export * from './ProjectUser';
 export * from './Reference';
 export * from './ReferenceType';
+export * from './RepositoryType';
 export * from './RunAnalysisRequest';
 export * from './S3Credentials';
 export * from './Sample';

package/src/models/CreateDashboardRequest.ts

@@ -1,65 +0,0 @@
-/* tslint:disable */
-/* eslint-disable */
-/**
- * Cirro Data
- * Cirro Data Platform service API
- *
- * The version of the OpenAPI document: latest
- * Contact: support@cirro.bio
- *
- * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
- * https://openapi-generator.tech
- * Do not edit the class manually.
- */
-
-import { exists, mapValues } from '../runtime';
-/**
- * 
- * @export
- * @interface CreateDashboardRequest
- */
-export interface CreateDashboardRequest {
-    /**
-     * 
-     * @type {object}
-     * @memberof CreateDashboardRequest
-     */
-    dashboardRequest?: object;
-}
-
-/**
- * Check if a given object implements the CreateDashboardRequest interface.
- */
-export function instanceOfCreateDashboardRequest(value: object): boolean {
-    let isInstance = true;
-
-    return isInstance;
-}
-
-export function CreateDashboardRequestFromJSON(json: any): CreateDashboardRequest {
-    return CreateDashboardRequestFromJSONTyped(json, false);
-}
-
-export function CreateDashboardRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): CreateDashboardRequest {
-    if ((json === undefined) || (json === null)) {
-        return json;
-    }
-    return {
-        
-        'dashboardRequest': !exists(json, 'dashboardRequest') ? undefined : json['dashboardRequest'],
-    };
-}
-
-export function CreateDashboardRequestToJSON(value?: CreateDashboardRequest | null): any {
-    if (value === undefined) {
-        return undefined;
-    }
-    if (value === null) {
-        return null;
-    }
-    return {
-        
-        'dashboardRequest': value.dashboardRequest,
-    };
-}
-

package/src/models/DatasetType.ts

@@ -1,37 +0,0 @@
-/* tslint:disable */
-/* eslint-disable */
-/**
- * Cirro Data
- * Cirro Data Platform service API
- *
- * The version of the OpenAPI document: latest
- * Contact: support@cirro.bio
- *
- * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
- * https://openapi-generator.tech
- * Do not edit the class manually.
- */
-
-/**
- * 
- * @export
- * @enum {string}
- */
-export enum DatasetType {
-    Upload = 'UPLOAD',
-    Public = 'PUBLIC'
-}
-
-
-export function DatasetTypeFromJSON(json: any): DatasetType {
-    return DatasetTypeFromJSONTyped(json, false);
-}
-
-export function DatasetTypeFromJSONTyped(json: any, ignoreDiscriminator: boolean): DatasetType {
-    return json as DatasetType;
-}
-
-export function DatasetTypeToJSON(value?: DatasetType | null): any {
-    return value as any;
-}
-

package/src/models/Region.ts

@@ -1,65 +0,0 @@
-/* tslint:disable */
-/* eslint-disable */
-/**
- * Cirro Data
- * Cirro Data Platform service API
- *
- * The version of the OpenAPI document: latest
- * Contact: support@cirro.bio
- *
- * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
- * https://openapi-generator.tech
- * Do not edit the class manually.
- */
-
-import { exists, mapValues } from '../runtime';
-/**
- * 
- * @export
- * @interface Region
- */
-export interface Region {
-    /**
-     * 
-     * @type {boolean}
-     * @memberof Region
-     */
-    globalRegion?: boolean;
-}
-
-/**
- * Check if a given object implements the Region interface.
- */
-export function instanceOfRegion(value: object): boolean {
-    let isInstance = true;
-
-    return isInstance;
-}
-
-export function RegionFromJSON(json: any): Region {
-    return RegionFromJSONTyped(json, false);
-}
-
-export function RegionFromJSONTyped(json: any, ignoreDiscriminator: boolean): Region {
-    if ((json === undefined) || (json === null)) {
-        return json;
-    }
-    return {
-        
-        'globalRegion': !exists(json, 'globalRegion') ? undefined : json['globalRegion'],
-    };
-}
-
-export function RegionToJSON(value?: Region | null): any {
-    if (value === undefined) {
-        return undefined;
-    }
-    if (value === null) {
-        return null;
-    }
-    return {
-        
-        'globalRegion': value.globalRegion,
-    };
-}
-

package/src/models/RegisterDatasetRequest.ts

@@ -1,92 +0,0 @@
-/* tslint:disable */
-/* eslint-disable */
-/**
- * Cirro Data
- * Cirro Data Platform service API
- *
- * The version of the OpenAPI document: latest
- * Contact: support@cirro.bio
- *
- * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
- * https://openapi-generator.tech
- * Do not edit the class manually.
- */
-
-import { exists, mapValues } from '../runtime';
-/**
- * 
- * @export
- * @interface RegisterDatasetRequest
- */
-export interface RegisterDatasetRequest {
-    /**
-     * 
-     * @type {string}
-     * @memberof RegisterDatasetRequest
-     */
-    name: string;
-    /**
-     * 
-     * @type {string}
-     * @memberof RegisterDatasetRequest
-     */
-    description: string;
-    /**
-     * 
-     * @type {string}
-     * @memberof RegisterDatasetRequest
-     */
-    processId: string;
-    /**
-     * List of file names (with relative paths) that will be uploaded
-     * @type {Array<string>}
-     * @memberof RegisterDatasetRequest
-     */
-    expectedFiles?: Array<string>;
-}
-
-/**
- * Check if a given object implements the RegisterDatasetRequest interface.
- */
-export function instanceOfRegisterDatasetRequest(value: object): boolean {
-    let isInstance = true;
-    isInstance = isInstance && "name" in value;
-    isInstance = isInstance && "description" in value;
-    isInstance = isInstance && "processId" in value;
-
-    return isInstance;
-}
-
-export function RegisterDatasetRequestFromJSON(json: any): RegisterDatasetRequest {
-    return RegisterDatasetRequestFromJSONTyped(json, false);
-}
-
-export function RegisterDatasetRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): RegisterDatasetRequest {
-    if ((json === undefined) || (json === null)) {
-        return json;
-    }
-    return {
-        
-        'name': json['name'],
-        'description': json['description'],
-        'processId': json['processId'],
-        'expectedFiles': !exists(json, 'expectedFiles') ? undefined : json['expectedFiles'],
-    };
-}
-
-export function RegisterDatasetRequestToJSON(value?: RegisterDatasetRequest | null): any {
-    if (value === undefined) {
-        return undefined;
-    }
-    if (value === null) {
-        return null;
-    }
-    return {
-        
-        'name': value.name,
-        'description': value.description,
-        'processId': value.processId,
-        'expectedFiles': value.expectedFiles,
-    };
-}
-

package/src/models/RegisterPublicDataRequest.ts

@@ -1,83 +0,0 @@
-/* tslint:disable */
-/* eslint-disable */
-/**
- * Cirro Data
- * Cirro Data Platform service API
- *
- * The version of the OpenAPI document: latest
- * Contact: support@cirro.bio
- *
- * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
- * https://openapi-generator.tech
- * Do not edit the class manually.
- */
-
-import { exists, mapValues } from '../runtime';
-/**
- * 
- * @export
- * @interface RegisterPublicDataRequest
- */
-export interface RegisterPublicDataRequest {
-    /**
-     * 
-     * @type {string}
-     * @memberof RegisterPublicDataRequest
-     */
-    name: string;
-    /**
-     * 
-     * @type {string}
-     * @memberof RegisterPublicDataRequest
-     */
-    description: string;
-    /**
-     * List of SRA/ENA/DDBJ/GEO/Synapse IDs
-     * @type {Array<string>}
-     * @memberof RegisterPublicDataRequest
-     */
-    publicIds?: Array<string>;
-}
-
-/**
- * Check if a given object implements the RegisterPublicDataRequest interface.
- */
-export function instanceOfRegisterPublicDataRequest(value: object): boolean {
-    let isInstance = true;
-    isInstance = isInstance && "name" in value;
-    isInstance = isInstance && "description" in value;
-
-    return isInstance;
-}
-
-export function RegisterPublicDataRequestFromJSON(json: any): RegisterPublicDataRequest {
-    return RegisterPublicDataRequestFromJSONTyped(json, false);
-}
-
-export function RegisterPublicDataRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): RegisterPublicDataRequest {
-    if ((json === undefined) || (json === null)) {
-        return json;
-    }
-    return {
-        
-        'name': json['name'],
-        'description': json['description'],
-        'publicIds': !exists(json, 'publicIds') ? undefined : json['publicIds'],
-    };
-}
-
-export function RegisterPublicDataRequestToJSON(value?: RegisterPublicDataRequest | null): any {
-    if (value === undefined) {
-        return undefined;
-    }
-    if (value === null) {
-        return null;
-    }
-    return {
-        
-        'name': value.name,
-        'description': value.description,
-        'publicIds': value.publicIds,
-    };
-}
-