@cirrobio/api-client 0.0.21-alpha → 0.0.23-alpha
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.openapi-generator/FILES +1 -0
- package/README.md +1 -1
- package/dist/apis/DatasetsApi.d.ts +50 -8
- package/dist/apis/DatasetsApi.js +186 -18
- package/dist/apis/ExecutionApi.d.ts +15 -1
- package/dist/apis/ExecutionApi.js +60 -0
- package/dist/models/Dataset.d.ts +1 -1
- package/dist/models/Dataset.js +3 -3
- package/dist/models/DatasetDetail.d.ts +1 -1
- package/dist/models/DatasetDetail.js +3 -3
- package/dist/models/RunAnalysisRequest.d.ts +69 -0
- package/dist/models/RunAnalysisRequest.js +68 -0
- package/dist/models/index.d.ts +1 -0
- package/dist/models/index.js +1 -0
- package/package.json +1 -1
- package/src/apis/DatasetsApi.ts +162 -18
- package/src/apis/ExecutionApi.ts +58 -0
- package/src/models/Dataset.ts +4 -4
- package/src/models/DatasetDetail.ts +4 -4
- package/src/models/RunAnalysisRequest.ts +120 -0
- package/src/models/index.ts +1 -0
package/.openapi-generator/FILES
CHANGED
package/README.md
CHANGED
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@@ -36,7 +36,7 @@ navigate to the folder of your consuming project and run one of the following co
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_published:_
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```
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npm install @cirrobio/api-client@0.0.
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npm install @cirrobio/api-client@0.0.23-alpha --save
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```
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_unPublished (not recommended):_
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@@ -32,15 +32,27 @@ export interface ImportPublicDatasetRequest {
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projectId: string;
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importDataRequest: ImportDataRequest;
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}
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export interface
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export interface IngestSamplesRequest {
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projectId: string;
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datasetId: string;
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}
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export interface RegenerateManifestRequest {
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projectId: string;
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datasetId: string;
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}
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export interface RerunTransformRequest {
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projectId: string;
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datasetId: string;
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}
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export interface UpdateDatasetOperationRequest {
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projectId: string;
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datasetId: string;
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updateDatasetRequest: UpdateDatasetRequest;
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}
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export interface UploadDatasetOperationRequest {
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projectId: string;
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uploadDatasetRequest: UploadDatasetRequest;
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}
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/**
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*
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*/
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@@ -96,15 +108,35 @@ export declare class DatasetsApi extends runtime.BaseAPI {
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*/
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importPublicDataset(requestParameters: ImportPublicDatasetRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<CreateResponse>;
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/**
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*
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*
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* Rerun sample ingest (TODO).
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* Rerun sample ingest
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*/
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ingestSamplesRaw(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>>;
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/**
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*
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*
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* Rerun sample ingest (TODO).
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* Rerun sample ingest
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*/
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ingestSamples(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
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/**
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* Regenerate dataset manifest (TODO).
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* Regenerate dataset manifest
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*/
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regenerateManifestRaw(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>>;
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/**
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* Regenerate dataset manifest (TODO).
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* Regenerate dataset manifest
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*/
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regenerateManifest(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
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/**
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* Rerun data transforms (TODO).
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* Rerun data transforms
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*/
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rerunTransformRaw(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>>;
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/**
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* Rerun data transforms (TODO).
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* Rerun data transforms
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*/
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rerunTransform(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void>;
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/**
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* Update info on a dataset
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* Update dataset
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* Update dataset
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*/
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updateDataset(requestParameters: UpdateDatasetOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<DatasetDetail>;
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/**
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* Registers a dataset in the system that you upload files into
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* Upload private dataset
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*/
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uploadDatasetRaw(requestParameters: UploadDatasetOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<UploadDatasetCreateResponse>>;
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/**
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* Registers a dataset in the system that you upload files into
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* Upload private dataset
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*/
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uploadDataset(requestParameters: UploadDatasetOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<UploadDatasetCreateResponse>;
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}
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package/dist/apis/DatasetsApi.js
CHANGED
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@@ -377,24 +377,23 @@ var DatasetsApi = /** @class */ (function (_super) {
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});
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};
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/**
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* Rerun sample ingest (TODO).
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* Rerun sample ingest
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*/
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DatasetsApi.prototype.
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DatasetsApi.prototype.ingestSamplesRaw = function (requestParameters, initOverrides) {
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return __awaiter(this, void 0, void 0, function () {
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var queryParameters, headerParameters, token, tokenString, response;
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return __generator(this, function (_a) {
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switch (_a.label) {
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case 0:
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if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
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throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling
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throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling ingestSamples.');
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}
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if (requestParameters.
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throw new runtime.RequiredError('
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if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
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throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling ingestSamples.');
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}
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queryParameters = {};
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headerParameters = {};
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headerParameters['Content-Type'] = 'application/json';
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if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
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token = this.configuration.accessToken;
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return [4 /*yield*/, token("accessToken", [])];
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}
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_a.label = 2;
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case 2: return [4 /*yield*/, this.request({
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path: "/projects/{projectId}/datasets/
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method: '
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path: "/projects/{projectId}/datasets/{datasetId}/ingest-samples".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))).replace("{".concat("datasetId", "}"), encodeURIComponent(String(requestParameters.datasetId))),
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method: 'PUT',
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headers: headerParameters,
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query: queryParameters,
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body: (0, index_1.UploadDatasetRequestToJSON)(requestParameters.uploadDatasetRequest),
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}, initOverrides)];
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case 3:
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response = _a.sent();
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return [2 /*return*/, new runtime.
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return [2 /*return*/, new runtime.VoidApiResponse(response)];
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}
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});
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});
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};
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/**
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* Rerun sample ingest (TODO).
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* Rerun sample ingest
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*/
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DatasetsApi.prototype.
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DatasetsApi.prototype.ingestSamples = function (requestParameters, initOverrides) {
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var response;
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case 0: return [4 /*yield*/, this.
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case 0: return [4 /*yield*/, this.ingestSamplesRaw(requestParameters, initOverrides)];
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case 1:
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_a.sent();
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return [2 /*return*/];
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}
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});
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});
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};
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/**
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* Regenerate dataset manifest (TODO).
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* Regenerate dataset manifest
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*/
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DatasetsApi.prototype.regenerateManifestRaw = function (requestParameters, initOverrides) {
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return __awaiter(this, void 0, void 0, function () {
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throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling regenerateManifest.');
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}
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throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling regenerateManifest.');
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}
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queryParameters = {};
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headerParameters = {};
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if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
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return [4 /*yield*/, token("accessToken", [])];
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headerParameters["Authorization"] = "Bearer ".concat(tokenString);
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}
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_a.label = 2;
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case 2: return [4 /*yield*/, this.request({
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path: "/projects/{projectId}/datasets/{datasetId}/regenerate-manifest".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))).replace("{".concat("datasetId", "}"), encodeURIComponent(String(requestParameters.datasetId))),
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method: 'PUT',
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headers: headerParameters,
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query: queryParameters,
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}, initOverrides)];
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}
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});
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};
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*/
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DatasetsApi.prototype.regenerateManifest = function (requestParameters, initOverrides) {
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return __generator(this, function (_a) {
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switch (_a.label) {
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case 0: return [4 /*yield*/, this.regenerateManifestRaw(requestParameters, initOverrides)];
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_a.sent();
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}
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});
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});
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};
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/**
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* Rerun data transforms
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*/
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DatasetsApi.prototype.rerunTransformRaw = function (requestParameters, initOverrides) {
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throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling rerunTransform.');
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}
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throw new runtime.RequiredError('datasetId', 'Required parameter requestParameters.datasetId was null or undefined when calling rerunTransform.');
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queryParameters = {};
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if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
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token = this.configuration.accessToken;
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case 2: return [4 /*yield*/, this.request({
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path: "/projects/{projectId}/datasets/{datasetId}/rerun-transform".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))).replace("{".concat("datasetId", "}"), encodeURIComponent(String(requestParameters.datasetId))),
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method: 'PUT',
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headers: headerParameters,
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query: queryParameters,
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}, initOverrides)];
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}
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};
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*/
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DatasetsApi.prototype.rerunTransform = function (requestParameters, initOverrides) {
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switch (_a.label) {
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case 0: return [4 /*yield*/, this.rerunTransformRaw(requestParameters, initOverrides)];
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_a.sent();
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return [2 /*return*/];
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/**
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* Upload private dataset
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*/
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DatasetsApi.prototype.uploadDatasetRaw = function (requestParameters, initOverrides) {
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return __awaiter(this, void 0, void 0, function () {
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return __generator(this, function (_a) {
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case 0:
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+
if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
|
|
621
|
+
throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling uploadDataset.');
|
|
622
|
+
}
|
|
623
|
+
if (requestParameters.uploadDatasetRequest === null || requestParameters.uploadDatasetRequest === undefined) {
|
|
624
|
+
throw new runtime.RequiredError('uploadDatasetRequest', 'Required parameter requestParameters.uploadDatasetRequest was null or undefined when calling uploadDataset.');
|
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|
+
}
|
|
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+
queryParameters = {};
|
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|
+
headerParameters = {};
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628
|
+
headerParameters['Content-Type'] = 'application/json';
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629
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+
if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
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+
token = this.configuration.accessToken;
|
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631
|
+
return [4 /*yield*/, token("accessToken", [])];
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|
+
case 1:
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|
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|
+
tokenString = _a.sent();
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|
+
if (tokenString) {
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|
+
headerParameters["Authorization"] = "Bearer ".concat(tokenString);
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|
+
}
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+
_a.label = 2;
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+
case 2: return [4 /*yield*/, this.request({
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|
+
path: "/projects/{projectId}/datasets/upload".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))),
|
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|
+
method: 'POST',
|
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|
+
headers: headerParameters,
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|
+
query: queryParameters,
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|
+
body: (0, index_1.UploadDatasetRequestToJSON)(requestParameters.uploadDatasetRequest),
|
|
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|
+
}, initOverrides)];
|
|
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|
+
case 3:
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|
+
response = _a.sent();
|
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|
+
return [2 /*return*/, new runtime.JSONApiResponse(response, function (jsonValue) { return (0, index_1.UploadDatasetCreateResponseFromJSON)(jsonValue); })];
|
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|
+
}
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|
+
});
|
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|
+
});
|
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|
+
};
|
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|
+
/**
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|
+
* Registers a dataset in the system that you upload files into
|
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|
+
* Upload private dataset
|
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|
+
*/
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|
+
DatasetsApi.prototype.uploadDataset = function (requestParameters, initOverrides) {
|
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|
+
return __awaiter(this, void 0, void 0, function () {
|
|
658
|
+
var response;
|
|
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|
+
return __generator(this, function (_a) {
|
|
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|
+
switch (_a.label) {
|
|
661
|
+
case 0: return [4 /*yield*/, this.uploadDatasetRaw(requestParameters, initOverrides)];
|
|
662
|
+
case 1:
|
|
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|
+
response = _a.sent();
|
|
664
|
+
return [4 /*yield*/, response.value()];
|
|
665
|
+
case 2: return [2 /*return*/, _a.sent()];
|
|
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|
+
}
|
|
667
|
+
});
|
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|
+
});
|
|
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|
+
};
|
|
502
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|
return DatasetsApi;
|
|
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|
}(runtime.BaseAPI));
|
|
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|
exports.DatasetsApi = DatasetsApi;
|
|
@@ -10,7 +10,7 @@
|
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10
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|
* Do not edit the class manually.
|
|
11
11
|
*/
|
|
12
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|
import * as runtime from '../runtime';
|
|
13
|
-
import type { GetExecutionLogsResponse, StopExecutionResponse, Task } from '../models/index';
|
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|
+
import type { CreateResponse, GetExecutionLogsResponse, RunAnalysisRequest, StopExecutionResponse, Task } from '../models/index';
|
|
14
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|
export interface GetExecutionLogsRequest {
|
|
15
15
|
datasetId: string;
|
|
16
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|
projectId: string;
|
|
@@ -31,6 +31,10 @@ export interface GetTasksForExecutionRequest {
|
|
|
31
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|
projectId: string;
|
|
32
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|
forceLive?: boolean;
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|
}
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|
+
export interface RunAnalysisOperationRequest {
|
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+
projectId: string;
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|
+
runAnalysisRequest: RunAnalysisRequest;
|
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|
+
}
|
|
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|
export interface StopAnalysisRequest {
|
|
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|
datasetId: string;
|
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36
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|
projectId: string;
|
|
@@ -83,6 +87,16 @@ export declare class ExecutionApi extends runtime.BaseAPI {
|
|
|
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* Get execution tasks
|
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84
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|
*/
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|
getTasksForExecution(requestParameters: GetTasksForExecutionRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<Array<Task>>;
|
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|
+
/**
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|
+
* Run analysis
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+
* Run analysis
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+
*/
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+
runAnalysisRaw(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<CreateResponse>>;
|
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|
+
/**
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|
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|
+
* Run analysis
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+
* Run analysis
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|
+
*/
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|
+
runAnalysis(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<CreateResponse>;
|
|
86
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|
/**
|
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87
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|
* Terminates all analysis jobs related to this execution
|
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|
* Stop execution
|
|
@@ -319,6 +319,66 @@ var ExecutionApi = /** @class */ (function (_super) {
|
|
|
319
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|
});
|
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320
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|
});
|
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321
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|
};
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|
+
/**
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|
+
* Run analysis
|
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|
+
* Run analysis
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+
*/
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+
ExecutionApi.prototype.runAnalysisRaw = function (requestParameters, initOverrides) {
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|
+
return __awaiter(this, void 0, void 0, function () {
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|
+
var queryParameters, headerParameters, token, tokenString, response;
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|
+
return __generator(this, function (_a) {
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|
+
switch (_a.label) {
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|
+
case 0:
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|
+
if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
|
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333
|
+
throw new runtime.RequiredError('projectId', 'Required parameter requestParameters.projectId was null or undefined when calling runAnalysis.');
|
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334
|
+
}
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|
335
|
+
if (requestParameters.runAnalysisRequest === null || requestParameters.runAnalysisRequest === undefined) {
|
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336
|
+
throw new runtime.RequiredError('runAnalysisRequest', 'Required parameter requestParameters.runAnalysisRequest was null or undefined when calling runAnalysis.');
|
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337
|
+
}
|
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338
|
+
queryParameters = {};
|
|
339
|
+
headerParameters = {};
|
|
340
|
+
headerParameters['Content-Type'] = 'application/json';
|
|
341
|
+
if (!(this.configuration && this.configuration.accessToken)) return [3 /*break*/, 2];
|
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342
|
+
token = this.configuration.accessToken;
|
|
343
|
+
return [4 /*yield*/, token("accessToken", [])];
|
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344
|
+
case 1:
|
|
345
|
+
tokenString = _a.sent();
|
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346
|
+
if (tokenString) {
|
|
347
|
+
headerParameters["Authorization"] = "Bearer ".concat(tokenString);
|
|
348
|
+
}
|
|
349
|
+
_a.label = 2;
|
|
350
|
+
case 2: return [4 /*yield*/, this.request({
|
|
351
|
+
path: "/projects/{projectId}/execution".replace("{".concat("projectId", "}"), encodeURIComponent(String(requestParameters.projectId))),
|
|
352
|
+
method: 'POST',
|
|
353
|
+
headers: headerParameters,
|
|
354
|
+
query: queryParameters,
|
|
355
|
+
body: (0, index_1.RunAnalysisRequestToJSON)(requestParameters.runAnalysisRequest),
|
|
356
|
+
}, initOverrides)];
|
|
357
|
+
case 3:
|
|
358
|
+
response = _a.sent();
|
|
359
|
+
return [2 /*return*/, new runtime.JSONApiResponse(response, function (jsonValue) { return (0, index_1.CreateResponseFromJSON)(jsonValue); })];
|
|
360
|
+
}
|
|
361
|
+
});
|
|
362
|
+
});
|
|
363
|
+
};
|
|
364
|
+
/**
|
|
365
|
+
* Run analysis
|
|
366
|
+
* Run analysis
|
|
367
|
+
*/
|
|
368
|
+
ExecutionApi.prototype.runAnalysis = function (requestParameters, initOverrides) {
|
|
369
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
370
|
+
var response;
|
|
371
|
+
return __generator(this, function (_a) {
|
|
372
|
+
switch (_a.label) {
|
|
373
|
+
case 0: return [4 /*yield*/, this.runAnalysisRaw(requestParameters, initOverrides)];
|
|
374
|
+
case 1:
|
|
375
|
+
response = _a.sent();
|
|
376
|
+
return [4 /*yield*/, response.value()];
|
|
377
|
+
case 2: return [2 /*return*/, _a.sent()];
|
|
378
|
+
}
|
|
379
|
+
});
|
|
380
|
+
});
|
|
381
|
+
};
|
|
322
382
|
/**
|
|
323
383
|
* Terminates all analysis jobs related to this execution
|
|
324
384
|
* Stop execution
|
package/dist/models/Dataset.d.ts
CHANGED
package/dist/models/Dataset.js
CHANGED
|
@@ -26,7 +26,7 @@ function instanceOfDataset(value) {
|
|
|
26
26
|
isInstance = isInstance && "description" in value;
|
|
27
27
|
isInstance = isInstance && "projectId" in value;
|
|
28
28
|
isInstance = isInstance && "processId" in value;
|
|
29
|
-
isInstance = isInstance && "
|
|
29
|
+
isInstance = isInstance && "sourceDatasetIds" in value;
|
|
30
30
|
isInstance = isInstance && "status" in value;
|
|
31
31
|
isInstance = isInstance && "tags" in value;
|
|
32
32
|
isInstance = isInstance && "createdBy" in value;
|
|
@@ -49,7 +49,7 @@ function DatasetFromJSONTyped(json, ignoreDiscriminator) {
|
|
|
49
49
|
'description': json['description'],
|
|
50
50
|
'projectId': json['projectId'],
|
|
51
51
|
'processId': json['processId'],
|
|
52
|
-
'
|
|
52
|
+
'sourceDatasetIds': json['sourceDatasetIds'],
|
|
53
53
|
'status': (0, Status_1.StatusFromJSON)(json['status']),
|
|
54
54
|
'tags': (json['tags'].map(Tag_1.TagFromJSON)),
|
|
55
55
|
'createdBy': json['createdBy'],
|
|
@@ -71,7 +71,7 @@ function DatasetToJSON(value) {
|
|
|
71
71
|
'description': value.description,
|
|
72
72
|
'projectId': value.projectId,
|
|
73
73
|
'processId': value.processId,
|
|
74
|
-
'
|
|
74
|
+
'sourceDatasetIds': value.sourceDatasetIds,
|
|
75
75
|
'status': (0, Status_1.StatusToJSON)(value.status),
|
|
76
76
|
'tags': (value.tags.map(Tag_1.TagToJSON)),
|
|
77
77
|
'createdBy': value.createdBy,
|
|
@@ -27,7 +27,7 @@ function instanceOfDatasetDetail(value) {
|
|
|
27
27
|
isInstance = isInstance && "s3" in value;
|
|
28
28
|
isInstance = isInstance && "processId" in value;
|
|
29
29
|
isInstance = isInstance && "projectId" in value;
|
|
30
|
-
isInstance = isInstance && "
|
|
30
|
+
isInstance = isInstance && "sourceDatasetIds" in value;
|
|
31
31
|
isInstance = isInstance && "status" in value;
|
|
32
32
|
isInstance = isInstance && "statusMessage" in value;
|
|
33
33
|
isInstance = isInstance && "tags" in value;
|
|
@@ -54,7 +54,7 @@ function DatasetDetailFromJSONTyped(json, ignoreDiscriminator) {
|
|
|
54
54
|
's3': json['s3'],
|
|
55
55
|
'processId': json['processId'],
|
|
56
56
|
'projectId': json['projectId'],
|
|
57
|
-
'
|
|
57
|
+
'sourceDatasetIds': json['sourceDatasetIds'],
|
|
58
58
|
'status': (0, Status_1.StatusFromJSON)(json['status']),
|
|
59
59
|
'statusMessage': json['statusMessage'],
|
|
60
60
|
'tags': (json['tags'].map(Tag_1.TagFromJSON)),
|
|
@@ -80,7 +80,7 @@ function DatasetDetailToJSON(value) {
|
|
|
80
80
|
's3': value.s3,
|
|
81
81
|
'processId': value.processId,
|
|
82
82
|
'projectId': value.projectId,
|
|
83
|
-
'
|
|
83
|
+
'sourceDatasetIds': value.sourceDatasetIds,
|
|
84
84
|
'status': (0, Status_1.StatusToJSON)(value.status),
|
|
85
85
|
'statusMessage': value.statusMessage,
|
|
86
86
|
'tags': (value.tags.map(Tag_1.TagToJSON)),
|
|
@@ -0,0 +1,69 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* Cirro Data
|
|
3
|
+
* Cirro Data Platform service API
|
|
4
|
+
*
|
|
5
|
+
* The version of the OpenAPI document: latest
|
|
6
|
+
* Contact: support@cirro.bio
|
|
7
|
+
*
|
|
8
|
+
* NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
|
|
9
|
+
* https://openapi-generator.tech
|
|
10
|
+
* Do not edit the class manually.
|
|
11
|
+
*/
|
|
12
|
+
/**
|
|
13
|
+
*
|
|
14
|
+
* @export
|
|
15
|
+
* @interface RunAnalysisRequest
|
|
16
|
+
*/
|
|
17
|
+
export interface RunAnalysisRequest {
|
|
18
|
+
/**
|
|
19
|
+
*
|
|
20
|
+
* @type {string}
|
|
21
|
+
* @memberof RunAnalysisRequest
|
|
22
|
+
*/
|
|
23
|
+
name: string;
|
|
24
|
+
/**
|
|
25
|
+
*
|
|
26
|
+
* @type {string}
|
|
27
|
+
* @memberof RunAnalysisRequest
|
|
28
|
+
*/
|
|
29
|
+
description: string;
|
|
30
|
+
/**
|
|
31
|
+
*
|
|
32
|
+
* @type {string}
|
|
33
|
+
* @memberof RunAnalysisRequest
|
|
34
|
+
*/
|
|
35
|
+
processId: string;
|
|
36
|
+
/**
|
|
37
|
+
*
|
|
38
|
+
* @type {Array<string>}
|
|
39
|
+
* @memberof RunAnalysisRequest
|
|
40
|
+
*/
|
|
41
|
+
sourceDatasetIds: Array<string>;
|
|
42
|
+
/**
|
|
43
|
+
*
|
|
44
|
+
* @type {string}
|
|
45
|
+
* @memberof RunAnalysisRequest
|
|
46
|
+
*/
|
|
47
|
+
resumeDatasetId: string;
|
|
48
|
+
/**
|
|
49
|
+
*
|
|
50
|
+
* @type {{ [key: string]: any; }}
|
|
51
|
+
* @memberof RunAnalysisRequest
|
|
52
|
+
*/
|
|
53
|
+
params: {
|
|
54
|
+
[key: string]: any;
|
|
55
|
+
};
|
|
56
|
+
/**
|
|
57
|
+
*
|
|
58
|
+
* @type {Array<string>}
|
|
59
|
+
* @memberof RunAnalysisRequest
|
|
60
|
+
*/
|
|
61
|
+
notificationEmails: Array<string>;
|
|
62
|
+
}
|
|
63
|
+
/**
|
|
64
|
+
* Check if a given object implements the RunAnalysisRequest interface.
|
|
65
|
+
*/
|
|
66
|
+
export declare function instanceOfRunAnalysisRequest(value: object): boolean;
|
|
67
|
+
export declare function RunAnalysisRequestFromJSON(json: any): RunAnalysisRequest;
|
|
68
|
+
export declare function RunAnalysisRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): RunAnalysisRequest;
|
|
69
|
+
export declare function RunAnalysisRequestToJSON(value?: RunAnalysisRequest | null): any;
|
|
@@ -0,0 +1,68 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
/* tslint:disable */
|
|
3
|
+
/* eslint-disable */
|
|
4
|
+
/**
|
|
5
|
+
* Cirro Data
|
|
6
|
+
* Cirro Data Platform service API
|
|
7
|
+
*
|
|
8
|
+
* The version of the OpenAPI document: latest
|
|
9
|
+
* Contact: support@cirro.bio
|
|
10
|
+
*
|
|
11
|
+
* NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
|
|
12
|
+
* https://openapi-generator.tech
|
|
13
|
+
* Do not edit the class manually.
|
|
14
|
+
*/
|
|
15
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
16
|
+
exports.RunAnalysisRequestToJSON = exports.RunAnalysisRequestFromJSONTyped = exports.RunAnalysisRequestFromJSON = exports.instanceOfRunAnalysisRequest = void 0;
|
|
17
|
+
/**
|
|
18
|
+
* Check if a given object implements the RunAnalysisRequest interface.
|
|
19
|
+
*/
|
|
20
|
+
function instanceOfRunAnalysisRequest(value) {
|
|
21
|
+
var isInstance = true;
|
|
22
|
+
isInstance = isInstance && "name" in value;
|
|
23
|
+
isInstance = isInstance && "description" in value;
|
|
24
|
+
isInstance = isInstance && "processId" in value;
|
|
25
|
+
isInstance = isInstance && "sourceDatasetIds" in value;
|
|
26
|
+
isInstance = isInstance && "resumeDatasetId" in value;
|
|
27
|
+
isInstance = isInstance && "params" in value;
|
|
28
|
+
isInstance = isInstance && "notificationEmails" in value;
|
|
29
|
+
return isInstance;
|
|
30
|
+
}
|
|
31
|
+
exports.instanceOfRunAnalysisRequest = instanceOfRunAnalysisRequest;
|
|
32
|
+
function RunAnalysisRequestFromJSON(json) {
|
|
33
|
+
return RunAnalysisRequestFromJSONTyped(json, false);
|
|
34
|
+
}
|
|
35
|
+
exports.RunAnalysisRequestFromJSON = RunAnalysisRequestFromJSON;
|
|
36
|
+
function RunAnalysisRequestFromJSONTyped(json, ignoreDiscriminator) {
|
|
37
|
+
if ((json === undefined) || (json === null)) {
|
|
38
|
+
return json;
|
|
39
|
+
}
|
|
40
|
+
return {
|
|
41
|
+
'name': json['name'],
|
|
42
|
+
'description': json['description'],
|
|
43
|
+
'processId': json['processId'],
|
|
44
|
+
'sourceDatasetIds': json['sourceDatasetIds'],
|
|
45
|
+
'resumeDatasetId': json['resumeDatasetId'],
|
|
46
|
+
'params': json['params'],
|
|
47
|
+
'notificationEmails': json['notificationEmails'],
|
|
48
|
+
};
|
|
49
|
+
}
|
|
50
|
+
exports.RunAnalysisRequestFromJSONTyped = RunAnalysisRequestFromJSONTyped;
|
|
51
|
+
function RunAnalysisRequestToJSON(value) {
|
|
52
|
+
if (value === undefined) {
|
|
53
|
+
return undefined;
|
|
54
|
+
}
|
|
55
|
+
if (value === null) {
|
|
56
|
+
return null;
|
|
57
|
+
}
|
|
58
|
+
return {
|
|
59
|
+
'name': value.name,
|
|
60
|
+
'description': value.description,
|
|
61
|
+
'processId': value.processId,
|
|
62
|
+
'sourceDatasetIds': value.sourceDatasetIds,
|
|
63
|
+
'resumeDatasetId': value.resumeDatasetId,
|
|
64
|
+
'params': value.params,
|
|
65
|
+
'notificationEmails': value.notificationEmails,
|
|
66
|
+
};
|
|
67
|
+
}
|
|
68
|
+
exports.RunAnalysisRequestToJSON = RunAnalysisRequestToJSON;
|
package/dist/models/index.d.ts
CHANGED
|
@@ -37,6 +37,7 @@ export * from './ProjectSettings';
|
|
|
37
37
|
export * from './ProjectUser';
|
|
38
38
|
export * from './Reference';
|
|
39
39
|
export * from './ReferenceType';
|
|
40
|
+
export * from './RunAnalysisRequest';
|
|
40
41
|
export * from './Sample';
|
|
41
42
|
export * from './SampleRequest';
|
|
42
43
|
export * from './ServiceConnection';
|
package/dist/models/index.js
CHANGED
|
@@ -55,6 +55,7 @@ __exportStar(require("./ProjectSettings"), exports);
|
|
|
55
55
|
__exportStar(require("./ProjectUser"), exports);
|
|
56
56
|
__exportStar(require("./Reference"), exports);
|
|
57
57
|
__exportStar(require("./ReferenceType"), exports);
|
|
58
|
+
__exportStar(require("./RunAnalysisRequest"), exports);
|
|
58
59
|
__exportStar(require("./Sample"), exports);
|
|
59
60
|
__exportStar(require("./SampleRequest"), exports);
|
|
60
61
|
__exportStar(require("./ServiceConnection"), exports);
|
package/package.json
CHANGED
package/src/apis/DatasetsApi.ts
CHANGED
|
@@ -69,9 +69,19 @@ export interface ImportPublicDatasetRequest {
|
|
|
69
69
|
importDataRequest: ImportDataRequest;
|
|
70
70
|
}
|
|
71
71
|
|
|
72
|
-
export interface
|
|
72
|
+
export interface IngestSamplesRequest {
|
|
73
73
|
projectId: string;
|
|
74
|
-
|
|
74
|
+
datasetId: string;
|
|
75
|
+
}
|
|
76
|
+
|
|
77
|
+
export interface RegenerateManifestRequest {
|
|
78
|
+
projectId: string;
|
|
79
|
+
datasetId: string;
|
|
80
|
+
}
|
|
81
|
+
|
|
82
|
+
export interface RerunTransformRequest {
|
|
83
|
+
projectId: string;
|
|
84
|
+
datasetId: string;
|
|
75
85
|
}
|
|
76
86
|
|
|
77
87
|
export interface UpdateDatasetOperationRequest {
|
|
@@ -80,6 +90,11 @@ export interface UpdateDatasetOperationRequest {
|
|
|
80
90
|
updateDatasetRequest: UpdateDatasetRequest;
|
|
81
91
|
}
|
|
82
92
|
|
|
93
|
+
export interface UploadDatasetOperationRequest {
|
|
94
|
+
projectId: string;
|
|
95
|
+
uploadDatasetRequest: UploadDatasetRequest;
|
|
96
|
+
}
|
|
97
|
+
|
|
83
98
|
/**
|
|
84
99
|
*
|
|
85
100
|
*/
|
|
@@ -317,23 +332,64 @@ export class DatasetsApi extends runtime.BaseAPI {
|
|
|
317
332
|
}
|
|
318
333
|
|
|
319
334
|
/**
|
|
320
|
-
*
|
|
321
|
-
*
|
|
335
|
+
* Rerun sample ingest (TODO).
|
|
336
|
+
* Rerun sample ingest
|
|
322
337
|
*/
|
|
323
|
-
async
|
|
338
|
+
async ingestSamplesRaw(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>> {
|
|
324
339
|
if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
|
|
325
|
-
throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling
|
|
340
|
+
throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling ingestSamples.');
|
|
326
341
|
}
|
|
327
342
|
|
|
328
|
-
if (requestParameters.
|
|
329
|
-
throw new runtime.RequiredError('
|
|
343
|
+
if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
|
|
344
|
+
throw new runtime.RequiredError('datasetId','Required parameter requestParameters.datasetId was null or undefined when calling ingestSamples.');
|
|
330
345
|
}
|
|
331
346
|
|
|
332
347
|
const queryParameters: any = {};
|
|
333
348
|
|
|
334
349
|
const headerParameters: runtime.HTTPHeaders = {};
|
|
335
350
|
|
|
336
|
-
|
|
351
|
+
if (this.configuration && this.configuration.accessToken) {
|
|
352
|
+
const token = this.configuration.accessToken;
|
|
353
|
+
const tokenString = await token("accessToken", []);
|
|
354
|
+
|
|
355
|
+
if (tokenString) {
|
|
356
|
+
headerParameters["Authorization"] = `Bearer ${tokenString}`;
|
|
357
|
+
}
|
|
358
|
+
}
|
|
359
|
+
const response = await this.request({
|
|
360
|
+
path: `/projects/{projectId}/datasets/{datasetId}/ingest-samples`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
|
|
361
|
+
method: 'PUT',
|
|
362
|
+
headers: headerParameters,
|
|
363
|
+
query: queryParameters,
|
|
364
|
+
}, initOverrides);
|
|
365
|
+
|
|
366
|
+
return new runtime.VoidApiResponse(response);
|
|
367
|
+
}
|
|
368
|
+
|
|
369
|
+
/**
|
|
370
|
+
* Rerun sample ingest (TODO).
|
|
371
|
+
* Rerun sample ingest
|
|
372
|
+
*/
|
|
373
|
+
async ingestSamples(requestParameters: IngestSamplesRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void> {
|
|
374
|
+
await this.ingestSamplesRaw(requestParameters, initOverrides);
|
|
375
|
+
}
|
|
376
|
+
|
|
377
|
+
/**
|
|
378
|
+
* Regenerate dataset manifest (TODO).
|
|
379
|
+
* Regenerate dataset manifest
|
|
380
|
+
*/
|
|
381
|
+
async regenerateManifestRaw(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>> {
|
|
382
|
+
if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
|
|
383
|
+
throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling regenerateManifest.');
|
|
384
|
+
}
|
|
385
|
+
|
|
386
|
+
if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
|
|
387
|
+
throw new runtime.RequiredError('datasetId','Required parameter requestParameters.datasetId was null or undefined when calling regenerateManifest.');
|
|
388
|
+
}
|
|
389
|
+
|
|
390
|
+
const queryParameters: any = {};
|
|
391
|
+
|
|
392
|
+
const headerParameters: runtime.HTTPHeaders = {};
|
|
337
393
|
|
|
338
394
|
if (this.configuration && this.configuration.accessToken) {
|
|
339
395
|
const token = this.configuration.accessToken;
|
|
@@ -344,23 +400,64 @@ export class DatasetsApi extends runtime.BaseAPI {
|
|
|
344
400
|
}
|
|
345
401
|
}
|
|
346
402
|
const response = await this.request({
|
|
347
|
-
path: `/projects/{projectId}/datasets/
|
|
348
|
-
method: '
|
|
403
|
+
path: `/projects/{projectId}/datasets/{datasetId}/regenerate-manifest`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
|
|
404
|
+
method: 'PUT',
|
|
349
405
|
headers: headerParameters,
|
|
350
406
|
query: queryParameters,
|
|
351
|
-
body: UploadDatasetRequestToJSON(requestParameters.uploadDatasetRequest),
|
|
352
407
|
}, initOverrides);
|
|
353
408
|
|
|
354
|
-
return new runtime.
|
|
409
|
+
return new runtime.VoidApiResponse(response);
|
|
355
410
|
}
|
|
356
411
|
|
|
357
412
|
/**
|
|
358
|
-
*
|
|
359
|
-
*
|
|
413
|
+
* Regenerate dataset manifest (TODO).
|
|
414
|
+
* Regenerate dataset manifest
|
|
360
415
|
*/
|
|
361
|
-
async
|
|
362
|
-
|
|
363
|
-
|
|
416
|
+
async regenerateManifest(requestParameters: RegenerateManifestRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void> {
|
|
417
|
+
await this.regenerateManifestRaw(requestParameters, initOverrides);
|
|
418
|
+
}
|
|
419
|
+
|
|
420
|
+
/**
|
|
421
|
+
* Rerun data transforms (TODO).
|
|
422
|
+
* Rerun data transforms
|
|
423
|
+
*/
|
|
424
|
+
async rerunTransformRaw(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<void>> {
|
|
425
|
+
if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
|
|
426
|
+
throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling rerunTransform.');
|
|
427
|
+
}
|
|
428
|
+
|
|
429
|
+
if (requestParameters.datasetId === null || requestParameters.datasetId === undefined) {
|
|
430
|
+
throw new runtime.RequiredError('datasetId','Required parameter requestParameters.datasetId was null or undefined when calling rerunTransform.');
|
|
431
|
+
}
|
|
432
|
+
|
|
433
|
+
const queryParameters: any = {};
|
|
434
|
+
|
|
435
|
+
const headerParameters: runtime.HTTPHeaders = {};
|
|
436
|
+
|
|
437
|
+
if (this.configuration && this.configuration.accessToken) {
|
|
438
|
+
const token = this.configuration.accessToken;
|
|
439
|
+
const tokenString = await token("accessToken", []);
|
|
440
|
+
|
|
441
|
+
if (tokenString) {
|
|
442
|
+
headerParameters["Authorization"] = `Bearer ${tokenString}`;
|
|
443
|
+
}
|
|
444
|
+
}
|
|
445
|
+
const response = await this.request({
|
|
446
|
+
path: `/projects/{projectId}/datasets/{datasetId}/rerun-transform`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))).replace(`{${"datasetId"}}`, encodeURIComponent(String(requestParameters.datasetId))),
|
|
447
|
+
method: 'PUT',
|
|
448
|
+
headers: headerParameters,
|
|
449
|
+
query: queryParameters,
|
|
450
|
+
}, initOverrides);
|
|
451
|
+
|
|
452
|
+
return new runtime.VoidApiResponse(response);
|
|
453
|
+
}
|
|
454
|
+
|
|
455
|
+
/**
|
|
456
|
+
* Rerun data transforms (TODO).
|
|
457
|
+
* Rerun data transforms
|
|
458
|
+
*/
|
|
459
|
+
async rerunTransform(requestParameters: RerunTransformRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<void> {
|
|
460
|
+
await this.rerunTransformRaw(requestParameters, initOverrides);
|
|
364
461
|
}
|
|
365
462
|
|
|
366
463
|
/**
|
|
@@ -414,4 +511,51 @@ export class DatasetsApi extends runtime.BaseAPI {
|
|
|
414
511
|
return await response.value();
|
|
415
512
|
}
|
|
416
513
|
|
|
514
|
+
/**
|
|
515
|
+
* Registers a dataset in the system that you upload files into
|
|
516
|
+
* Upload private dataset
|
|
517
|
+
*/
|
|
518
|
+
async uploadDatasetRaw(requestParameters: UploadDatasetOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<UploadDatasetCreateResponse>> {
|
|
519
|
+
if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
|
|
520
|
+
throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling uploadDataset.');
|
|
521
|
+
}
|
|
522
|
+
|
|
523
|
+
if (requestParameters.uploadDatasetRequest === null || requestParameters.uploadDatasetRequest === undefined) {
|
|
524
|
+
throw new runtime.RequiredError('uploadDatasetRequest','Required parameter requestParameters.uploadDatasetRequest was null or undefined when calling uploadDataset.');
|
|
525
|
+
}
|
|
526
|
+
|
|
527
|
+
const queryParameters: any = {};
|
|
528
|
+
|
|
529
|
+
const headerParameters: runtime.HTTPHeaders = {};
|
|
530
|
+
|
|
531
|
+
headerParameters['Content-Type'] = 'application/json';
|
|
532
|
+
|
|
533
|
+
if (this.configuration && this.configuration.accessToken) {
|
|
534
|
+
const token = this.configuration.accessToken;
|
|
535
|
+
const tokenString = await token("accessToken", []);
|
|
536
|
+
|
|
537
|
+
if (tokenString) {
|
|
538
|
+
headerParameters["Authorization"] = `Bearer ${tokenString}`;
|
|
539
|
+
}
|
|
540
|
+
}
|
|
541
|
+
const response = await this.request({
|
|
542
|
+
path: `/projects/{projectId}/datasets/upload`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))),
|
|
543
|
+
method: 'POST',
|
|
544
|
+
headers: headerParameters,
|
|
545
|
+
query: queryParameters,
|
|
546
|
+
body: UploadDatasetRequestToJSON(requestParameters.uploadDatasetRequest),
|
|
547
|
+
}, initOverrides);
|
|
548
|
+
|
|
549
|
+
return new runtime.JSONApiResponse(response, (jsonValue) => UploadDatasetCreateResponseFromJSON(jsonValue));
|
|
550
|
+
}
|
|
551
|
+
|
|
552
|
+
/**
|
|
553
|
+
* Registers a dataset in the system that you upload files into
|
|
554
|
+
* Upload private dataset
|
|
555
|
+
*/
|
|
556
|
+
async uploadDataset(requestParameters: UploadDatasetOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<UploadDatasetCreateResponse> {
|
|
557
|
+
const response = await this.uploadDatasetRaw(requestParameters, initOverrides);
|
|
558
|
+
return await response.value();
|
|
559
|
+
}
|
|
560
|
+
|
|
417
561
|
}
|
package/src/apis/ExecutionApi.ts
CHANGED
|
@@ -15,13 +15,19 @@
|
|
|
15
15
|
|
|
16
16
|
import * as runtime from '../runtime';
|
|
17
17
|
import type {
|
|
18
|
+
CreateResponse,
|
|
18
19
|
GetExecutionLogsResponse,
|
|
20
|
+
RunAnalysisRequest,
|
|
19
21
|
StopExecutionResponse,
|
|
20
22
|
Task,
|
|
21
23
|
} from '../models/index';
|
|
22
24
|
import {
|
|
25
|
+
CreateResponseFromJSON,
|
|
26
|
+
CreateResponseToJSON,
|
|
23
27
|
GetExecutionLogsResponseFromJSON,
|
|
24
28
|
GetExecutionLogsResponseToJSON,
|
|
29
|
+
RunAnalysisRequestFromJSON,
|
|
30
|
+
RunAnalysisRequestToJSON,
|
|
25
31
|
StopExecutionResponseFromJSON,
|
|
26
32
|
StopExecutionResponseToJSON,
|
|
27
33
|
TaskFromJSON,
|
|
@@ -52,6 +58,11 @@ export interface GetTasksForExecutionRequest {
|
|
|
52
58
|
forceLive?: boolean;
|
|
53
59
|
}
|
|
54
60
|
|
|
61
|
+
export interface RunAnalysisOperationRequest {
|
|
62
|
+
projectId: string;
|
|
63
|
+
runAnalysisRequest: RunAnalysisRequest;
|
|
64
|
+
}
|
|
65
|
+
|
|
55
66
|
export interface StopAnalysisRequest {
|
|
56
67
|
datasetId: string;
|
|
57
68
|
projectId: string;
|
|
@@ -254,6 +265,53 @@ export class ExecutionApi extends runtime.BaseAPI {
|
|
|
254
265
|
return await response.value();
|
|
255
266
|
}
|
|
256
267
|
|
|
268
|
+
/**
|
|
269
|
+
* Run analysis
|
|
270
|
+
* Run analysis
|
|
271
|
+
*/
|
|
272
|
+
async runAnalysisRaw(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<runtime.ApiResponse<CreateResponse>> {
|
|
273
|
+
if (requestParameters.projectId === null || requestParameters.projectId === undefined) {
|
|
274
|
+
throw new runtime.RequiredError('projectId','Required parameter requestParameters.projectId was null or undefined when calling runAnalysis.');
|
|
275
|
+
}
|
|
276
|
+
|
|
277
|
+
if (requestParameters.runAnalysisRequest === null || requestParameters.runAnalysisRequest === undefined) {
|
|
278
|
+
throw new runtime.RequiredError('runAnalysisRequest','Required parameter requestParameters.runAnalysisRequest was null or undefined when calling runAnalysis.');
|
|
279
|
+
}
|
|
280
|
+
|
|
281
|
+
const queryParameters: any = {};
|
|
282
|
+
|
|
283
|
+
const headerParameters: runtime.HTTPHeaders = {};
|
|
284
|
+
|
|
285
|
+
headerParameters['Content-Type'] = 'application/json';
|
|
286
|
+
|
|
287
|
+
if (this.configuration && this.configuration.accessToken) {
|
|
288
|
+
const token = this.configuration.accessToken;
|
|
289
|
+
const tokenString = await token("accessToken", []);
|
|
290
|
+
|
|
291
|
+
if (tokenString) {
|
|
292
|
+
headerParameters["Authorization"] = `Bearer ${tokenString}`;
|
|
293
|
+
}
|
|
294
|
+
}
|
|
295
|
+
const response = await this.request({
|
|
296
|
+
path: `/projects/{projectId}/execution`.replace(`{${"projectId"}}`, encodeURIComponent(String(requestParameters.projectId))),
|
|
297
|
+
method: 'POST',
|
|
298
|
+
headers: headerParameters,
|
|
299
|
+
query: queryParameters,
|
|
300
|
+
body: RunAnalysisRequestToJSON(requestParameters.runAnalysisRequest),
|
|
301
|
+
}, initOverrides);
|
|
302
|
+
|
|
303
|
+
return new runtime.JSONApiResponse(response, (jsonValue) => CreateResponseFromJSON(jsonValue));
|
|
304
|
+
}
|
|
305
|
+
|
|
306
|
+
/**
|
|
307
|
+
* Run analysis
|
|
308
|
+
* Run analysis
|
|
309
|
+
*/
|
|
310
|
+
async runAnalysis(requestParameters: RunAnalysisOperationRequest, initOverrides?: RequestInit | runtime.InitOverrideFunction): Promise<CreateResponse> {
|
|
311
|
+
const response = await this.runAnalysisRaw(requestParameters, initOverrides);
|
|
312
|
+
return await response.value();
|
|
313
|
+
}
|
|
314
|
+
|
|
257
315
|
/**
|
|
258
316
|
* Terminates all analysis jobs related to this execution
|
|
259
317
|
* Stop execution
|
package/src/models/Dataset.ts
CHANGED
|
@@ -67,7 +67,7 @@ export interface Dataset {
|
|
|
67
67
|
* @type {Array<string>}
|
|
68
68
|
* @memberof Dataset
|
|
69
69
|
*/
|
|
70
|
-
|
|
70
|
+
sourceDatasetIds: Array<string>;
|
|
71
71
|
/**
|
|
72
72
|
*
|
|
73
73
|
* @type {Status}
|
|
@@ -110,7 +110,7 @@ export function instanceOfDataset(value: object): boolean {
|
|
|
110
110
|
isInstance = isInstance && "description" in value;
|
|
111
111
|
isInstance = isInstance && "projectId" in value;
|
|
112
112
|
isInstance = isInstance && "processId" in value;
|
|
113
|
-
isInstance = isInstance && "
|
|
113
|
+
isInstance = isInstance && "sourceDatasetIds" in value;
|
|
114
114
|
isInstance = isInstance && "status" in value;
|
|
115
115
|
isInstance = isInstance && "tags" in value;
|
|
116
116
|
isInstance = isInstance && "createdBy" in value;
|
|
@@ -135,7 +135,7 @@ export function DatasetFromJSONTyped(json: any, ignoreDiscriminator: boolean): D
|
|
|
135
135
|
'description': json['description'],
|
|
136
136
|
'projectId': json['projectId'],
|
|
137
137
|
'processId': json['processId'],
|
|
138
|
-
'
|
|
138
|
+
'sourceDatasetIds': json['sourceDatasetIds'],
|
|
139
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|
'status': StatusFromJSON(json['status']),
|
|
140
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|
'tags': ((json['tags'] as Array<any>).map(TagFromJSON)),
|
|
141
141
|
'createdBy': json['createdBy'],
|
|
@@ -158,7 +158,7 @@ export function DatasetToJSON(value?: Dataset | null): any {
|
|
|
158
158
|
'description': value.description,
|
|
159
159
|
'projectId': value.projectId,
|
|
160
160
|
'processId': value.processId,
|
|
161
|
-
'
|
|
161
|
+
'sourceDatasetIds': value.sourceDatasetIds,
|
|
162
162
|
'status': StatusToJSON(value.status),
|
|
163
163
|
'tags': ((value.tags as Array<any>).map(TagToJSON)),
|
|
164
164
|
'createdBy': value.createdBy,
|
|
@@ -73,7 +73,7 @@ export interface DatasetDetail {
|
|
|
73
73
|
* @type {Array<string>}
|
|
74
74
|
* @memberof DatasetDetail
|
|
75
75
|
*/
|
|
76
|
-
|
|
76
|
+
sourceDatasetIds: Array<string>;
|
|
77
77
|
/**
|
|
78
78
|
*
|
|
79
79
|
* @type {Status}
|
|
@@ -135,7 +135,7 @@ export function instanceOfDatasetDetail(value: object): boolean {
|
|
|
135
135
|
isInstance = isInstance && "s3" in value;
|
|
136
136
|
isInstance = isInstance && "processId" in value;
|
|
137
137
|
isInstance = isInstance && "projectId" in value;
|
|
138
|
-
isInstance = isInstance && "
|
|
138
|
+
isInstance = isInstance && "sourceDatasetIds" in value;
|
|
139
139
|
isInstance = isInstance && "status" in value;
|
|
140
140
|
isInstance = isInstance && "statusMessage" in value;
|
|
141
141
|
isInstance = isInstance && "tags" in value;
|
|
@@ -164,7 +164,7 @@ export function DatasetDetailFromJSONTyped(json: any, ignoreDiscriminator: boole
|
|
|
164
164
|
's3': json['s3'],
|
|
165
165
|
'processId': json['processId'],
|
|
166
166
|
'projectId': json['projectId'],
|
|
167
|
-
'
|
|
167
|
+
'sourceDatasetIds': json['sourceDatasetIds'],
|
|
168
168
|
'status': StatusFromJSON(json['status']),
|
|
169
169
|
'statusMessage': json['statusMessage'],
|
|
170
170
|
'tags': ((json['tags'] as Array<any>).map(TagFromJSON)),
|
|
@@ -191,7 +191,7 @@ export function DatasetDetailToJSON(value?: DatasetDetail | null): any {
|
|
|
191
191
|
's3': value.s3,
|
|
192
192
|
'processId': value.processId,
|
|
193
193
|
'projectId': value.projectId,
|
|
194
|
-
'
|
|
194
|
+
'sourceDatasetIds': value.sourceDatasetIds,
|
|
195
195
|
'status': StatusToJSON(value.status),
|
|
196
196
|
'statusMessage': value.statusMessage,
|
|
197
197
|
'tags': ((value.tags as Array<any>).map(TagToJSON)),
|
|
@@ -0,0 +1,120 @@
|
|
|
1
|
+
/* tslint:disable */
|
|
2
|
+
/* eslint-disable */
|
|
3
|
+
/**
|
|
4
|
+
* Cirro Data
|
|
5
|
+
* Cirro Data Platform service API
|
|
6
|
+
*
|
|
7
|
+
* The version of the OpenAPI document: latest
|
|
8
|
+
* Contact: support@cirro.bio
|
|
9
|
+
*
|
|
10
|
+
* NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
|
|
11
|
+
* https://openapi-generator.tech
|
|
12
|
+
* Do not edit the class manually.
|
|
13
|
+
*/
|
|
14
|
+
|
|
15
|
+
import { exists, mapValues } from '../runtime';
|
|
16
|
+
/**
|
|
17
|
+
*
|
|
18
|
+
* @export
|
|
19
|
+
* @interface RunAnalysisRequest
|
|
20
|
+
*/
|
|
21
|
+
export interface RunAnalysisRequest {
|
|
22
|
+
/**
|
|
23
|
+
*
|
|
24
|
+
* @type {string}
|
|
25
|
+
* @memberof RunAnalysisRequest
|
|
26
|
+
*/
|
|
27
|
+
name: string;
|
|
28
|
+
/**
|
|
29
|
+
*
|
|
30
|
+
* @type {string}
|
|
31
|
+
* @memberof RunAnalysisRequest
|
|
32
|
+
*/
|
|
33
|
+
description: string;
|
|
34
|
+
/**
|
|
35
|
+
*
|
|
36
|
+
* @type {string}
|
|
37
|
+
* @memberof RunAnalysisRequest
|
|
38
|
+
*/
|
|
39
|
+
processId: string;
|
|
40
|
+
/**
|
|
41
|
+
*
|
|
42
|
+
* @type {Array<string>}
|
|
43
|
+
* @memberof RunAnalysisRequest
|
|
44
|
+
*/
|
|
45
|
+
sourceDatasetIds: Array<string>;
|
|
46
|
+
/**
|
|
47
|
+
*
|
|
48
|
+
* @type {string}
|
|
49
|
+
* @memberof RunAnalysisRequest
|
|
50
|
+
*/
|
|
51
|
+
resumeDatasetId: string;
|
|
52
|
+
/**
|
|
53
|
+
*
|
|
54
|
+
* @type {{ [key: string]: any; }}
|
|
55
|
+
* @memberof RunAnalysisRequest
|
|
56
|
+
*/
|
|
57
|
+
params: { [key: string]: any; };
|
|
58
|
+
/**
|
|
59
|
+
*
|
|
60
|
+
* @type {Array<string>}
|
|
61
|
+
* @memberof RunAnalysisRequest
|
|
62
|
+
*/
|
|
63
|
+
notificationEmails: Array<string>;
|
|
64
|
+
}
|
|
65
|
+
|
|
66
|
+
/**
|
|
67
|
+
* Check if a given object implements the RunAnalysisRequest interface.
|
|
68
|
+
*/
|
|
69
|
+
export function instanceOfRunAnalysisRequest(value: object): boolean {
|
|
70
|
+
let isInstance = true;
|
|
71
|
+
isInstance = isInstance && "name" in value;
|
|
72
|
+
isInstance = isInstance && "description" in value;
|
|
73
|
+
isInstance = isInstance && "processId" in value;
|
|
74
|
+
isInstance = isInstance && "sourceDatasetIds" in value;
|
|
75
|
+
isInstance = isInstance && "resumeDatasetId" in value;
|
|
76
|
+
isInstance = isInstance && "params" in value;
|
|
77
|
+
isInstance = isInstance && "notificationEmails" in value;
|
|
78
|
+
|
|
79
|
+
return isInstance;
|
|
80
|
+
}
|
|
81
|
+
|
|
82
|
+
export function RunAnalysisRequestFromJSON(json: any): RunAnalysisRequest {
|
|
83
|
+
return RunAnalysisRequestFromJSONTyped(json, false);
|
|
84
|
+
}
|
|
85
|
+
|
|
86
|
+
export function RunAnalysisRequestFromJSONTyped(json: any, ignoreDiscriminator: boolean): RunAnalysisRequest {
|
|
87
|
+
if ((json === undefined) || (json === null)) {
|
|
88
|
+
return json;
|
|
89
|
+
}
|
|
90
|
+
return {
|
|
91
|
+
|
|
92
|
+
'name': json['name'],
|
|
93
|
+
'description': json['description'],
|
|
94
|
+
'processId': json['processId'],
|
|
95
|
+
'sourceDatasetIds': json['sourceDatasetIds'],
|
|
96
|
+
'resumeDatasetId': json['resumeDatasetId'],
|
|
97
|
+
'params': json['params'],
|
|
98
|
+
'notificationEmails': json['notificationEmails'],
|
|
99
|
+
};
|
|
100
|
+
}
|
|
101
|
+
|
|
102
|
+
export function RunAnalysisRequestToJSON(value?: RunAnalysisRequest | null): any {
|
|
103
|
+
if (value === undefined) {
|
|
104
|
+
return undefined;
|
|
105
|
+
}
|
|
106
|
+
if (value === null) {
|
|
107
|
+
return null;
|
|
108
|
+
}
|
|
109
|
+
return {
|
|
110
|
+
|
|
111
|
+
'name': value.name,
|
|
112
|
+
'description': value.description,
|
|
113
|
+
'processId': value.processId,
|
|
114
|
+
'sourceDatasetIds': value.sourceDatasetIds,
|
|
115
|
+
'resumeDatasetId': value.resumeDatasetId,
|
|
116
|
+
'params': value.params,
|
|
117
|
+
'notificationEmails': value.notificationEmails,
|
|
118
|
+
};
|
|
119
|
+
}
|
|
120
|
+
|
package/src/models/index.ts
CHANGED
|
@@ -39,6 +39,7 @@ export * from './ProjectSettings';
|
|
|
39
39
|
export * from './ProjectUser';
|
|
40
40
|
export * from './Reference';
|
|
41
41
|
export * from './ReferenceType';
|
|
42
|
+
export * from './RunAnalysisRequest';
|
|
42
43
|
export * from './Sample';
|
|
43
44
|
export * from './SampleRequest';
|
|
44
45
|
export * from './ServiceConnection';
|